G16961


Basic Information

Item Value
gene id G16961
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7461128 ~ 7492111 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU19025
GCTGCATCTGAAATCCCATAGCCTCTCTGAGTAGGCTAGGTACTTCTTTGAATAAGTACTTCCTTCATGACCATTAAAAAAAGAATAAAAAAAAAGGATGGAGTAAAAAACAATTATAAAAGGAAAAGGCCTTGACAAACAGCTGAAGTTTCACTAAGCCATGATTAGAGTGGAGAAGGGTTCTTGTTTTCATATCTGCCACAGAATTCCAGCGAAAGCTTTCAGGTGGATTTCCAGTCTGAGCGAAGCAAGAGACGATGCCACACTTGATCCTGAAGGCATCAAGCATGAGACACCCTTGGTCTGATTTGTAAAAAATATTGTTGGTACCATACCCAGTGACCGAGAATGGCACCGAAACCAAAACAAAGATGTAATGAAACAGGCTTGCCAGACAAAAGATTAATCCCAGAGAGAAACCGAGGCGGATGCTATGCCTTGAATTGTAAAAGGCACTACTATCATCATTGGTAGAGCAAGTAGTTCTTAAGGGAGGCAGGTAAGGGCAGTCCATGGATTTCACTCAGTCGTTCTCTCCCCAGCGCGACCCGTACCGAGCGCCTACAGAGGTCCATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU19025 True 576 lncRNA 0.50 2 7461128 7492111

Neighbor

gene id symbol gene type direction distance location
CI01000001_07421548_07447343 RAP1GAP coding upstream 13623 7421548 ~ 7447505 (+)
CI01000001_07405859_07406484 NA coding upstream 54439 7405144 ~ 7406689 (+)
CI01000001_07330166_07335508 GLUT1, GLUT1A, SLC2A1A, SLC2A1B coding upstream 125092 7330166 ~ 7336036 (+)
CI01000001_07231558_07266828 EIF4G3, EIF4G3B coding upstream 194226 7231558 ~ 7266902 (+)
CI01000001_07208833_07215412 NA coding upstream 245621 7208283 ~ 7215507 (+)
CI01000001_07527533_07530601 NA coding downstream 34918 7527029 ~ 7531071 (+)
CI01000001_07531945_07539781 NA coding downstream 39430 7531541 ~ 7540586 (+)
CI01000001_07544981_07548224 GPR157 coding downstream 52799 7544910 ~ 7548706 (+)
CI01000001_07558102_07564471 SLC2A5 coding downstream 64814 7556925 ~ 7564666 (+)
CI01000001_07577777_07584809 ENO1, ENO1A, ENOA coding downstream 85614 7577725 ~ 7584809 (+)
G16978 NA non-coding upstream 31061 7429190 ~ 7430067 (+)
G17061 NA non-coding upstream 137513 7323286 ~ 7323615 (+)
G17057 NA non-coding upstream 142098 7316664 ~ 7319030 (+)
G16970 NA non-coding upstream 176224 7279243 ~ 7284904 (+)
G17019 NA non-coding upstream 308703 7152094 ~ 7152425 (+)
G16997 NA non-coding downstream 13834 7505945 ~ 7506881 (+)
G17116 NA non-coding downstream 83401 7575512 ~ 7575845 (+)
G17106 NA non-coding downstream 105870 7597981 ~ 7696043 (+)
G17137 NA non-coding downstream 300093 7792204 ~ 7792612 (+)
G17103 NA non-coding downstream 382098 7874209 ~ 7906024 (+)
G15995 NA other upstream 1746177 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 2171172 5279837 ~ 5287698 (+)
G15794 NA other upstream 2396424 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3839677 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5790124 1667762 ~ 1671167 (+)
G17234 NA other downstream 540013 8032124 ~ 8032483 (+)
G17353 NA other downstream 1723911 9216022 ~ 9228859 (+)
G17354 NA other downstream 1742352 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 1926217 9435836 ~ 9436373 (+)

Expression


Co-expression Network