G20233 (asic2,LOC107720021,LOC107654528,LOC107601227,LOC107674665,LOC107720082,LOC107590422)


Basic Information

Item Value
gene id G20233
gene name asic2,LOC107720021,LOC107654528,LOC107601227,LOC107674665,LOC107720082,LOC107590422
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14632214 ~ 14687436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30131
CGTTTTGAAGTCTTGGTGGTTGCACTCCTGGCCCTGGAAACGGCAGTAGAGCATCATCTCCTTCAGGTCGTGGCCCACTCGTTCAGTGAACTCCCGCATGCTGAAGGGCTTGGGCCGGTAGTTAGTGAAGTTGGATTTATCTGTGAGAAAGGCCAGCACGTGGGGCTCGGCCAGGTGCGGCTCAGGGATCTGCAGATGCACGTCCAGCAGGGCCAACAGTTCCCCAGCGTGGTAGAGGTCGTTCTGCGTGAGACGTGTGAAACGGTAGGCGTTCAGATTGCAGACGGTGACGGCGGGAAACACTAGGCTGCCAGAAACCACAGCATCCACACTCGTGACGTGGGGGTACGAGAGGAAGTAAGCCAGCCTCTCTGTGCTCTCCAGGACGAGCAGAACCAGGCTGGCCAGCAAGGCCGCGCTCCAGAGCAGACGGCGTGAAGTGGAGCggtgagaggaggaggaagagtaGGGGAAGATGAAGCGTAAACCGTGCAGGGTGCTGCGATGGGCGAAGGACTGCCAAGACGTGGGGCCTCCCAGGCTCCCCATGCCTCCGCTCTCGGTCTCACGGCTGGCCTCGCTTCCACAGCCCTCCTTCAGGTCCATCGCTGACACGCACACACCTGCAGGCAGACACACGGCGATTATCAGTTTAAGCCCGGGCACCTTCTGGCATATGATTCTGGCTATGTTTCACTTCATTAGAGTTTCACAGACACATCAATAATATATCACGGAATACAGAGTCTTTCTTGAAGCGGTGGGTTTGAAACAAACATGAAGAGACACTGTGACACTGTAAGGCTttatgaaaaaacataaaactgaatGTAGAGACCAGTGAGAGAGAGGATTTATATAACATGACCCCACTGACTAAAGAagctaaaatgttttcagacacAGAAGGAAGAAAAGGACAAAGcgaaactgaaagaaaaaaataagaggaaagatggaaataaagagagaaagacagaaggatgagatggatggatgaaagataaagaggaagaaaaatgagagagaaagacgaaGGCAGGAGGGAAGGCAAGAAGGAAGTCAGGTGGGAGGACAGGAAGGAAGACGGGGTGAAGGAAAGAAGGGagaaaaatgagagagaaaggagaataAGAAGGCAAAAAGGAAGGCAAGCAGGAAGTTAGAAGAGTGAAGAAGATTGaatggaagaaagaaagcaaacaaaaaataaaggaaacaaGGAAGTAGAGGATAGAAGGAAGAACGGAGCGAAAAAGGAaggcataaaataataaaagaaagaagaaagcaaacaaGGAAGGAAAAAGttgaaggaaggaagaaagagaggagaggtAGAATAAGAACGATAGAATTGATgaaagaaggaaggaaggaaaatgAGAGAGAAGATGGAAGCAAGCAaggagaaaaatgtgaaaaagaagaaCAAGGGAAGAAAGGAGAAAGAATGCAATGGCAAAAAtacgtaagaaaaaaaataattttagcagATATAAACTAACACATACGCTCGGACAGAGACAAATCAAGATTCACAGACCCCCTGACATCATAGCCAAACTGTCTCCTGTCCAATCAGAGCGAGCGAtacacatacagagagagaaagacagggtCCATTGAACACTAGTAGACAGAGCTGctcctataaataaatatcaggctggaccacacacacacatcactgagTGAAGGAAGAACAGATCTTGCTCCAGTTAAGCAGTGTGAGAGGGTGGCAATGGAGTGGAAGATGCTGCCCAAGGGTTTCCCTCCGTCTGTCTCTCCACCCACTCCATCACTTCAGCCCCTCCAAATGCCAGGATCCTCCTTCTCTACACCATCTCCCTCCTCTGCTTCTCCTTTTACATCTAAAAATCTCTCTCTAACTTTCTCCCACTTGTTTAAAAGATAAGACAATGCCCAGAGCAAAACAGCACACATTTCTGAAACAAGTTTGGCAGTAAAGTATTGCTACCTAAGAGTCACGCCAATAAAGctattcaaattaaaactaaaaatgaaacgcAAACGGTACGAATCTTAAAAACTATCCCATCCcccataaacacatacacacacggtCACTGGACATCCAAAGGCGATTCTTAGCACCTCACGTAGCCAAACGACACAACATCCAGCCgtacatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagtgagtgagtgagtgagtgagtgagacagagagagagag

Function

symbol description
asic2 Predicted to enable ligand-gated sodium channel activity. Acts upstream of or within response to steroid hormone. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; gill; olfactory rosette; and ovary. Orthologous to human ASIC2 (acid sensing ion channel subunit 2).

NR:

description
PREDICTED: acid-sensing ion channel 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30131 True 2246 lncRNA 0.47 2 14632214 14687436

Neighbor

gene id symbol gene type direction distance location
arf2a arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding downstream 50451 14573762 ~ 14581763 (-)
LOC122341419 LOC107601299,LOC107721482,LOC107654457,LOC107688136,LOC107720081,LOC107590425 coding downstream 76129 14462247 ~ 14556085 (-)
LOC122341422 LOC107654457,LOC107601299,LOC107720081,LOC107688136,LOC107721482 coding downstream 169967 14459822 ~ 14462247 (-)
tubg1 tubg1,LOC107721485 coding downstream 216617 14404974 ~ 14415597 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding downstream 276226 14328206 ~ 14355988 (-)
mpp3a mpp3a,mpp3,LOC107654527,LOC107737916,LOC107720025,LOC107674727,LOC107591370 coding upstream 280489 14967925 ~ 14987140 (-)
si:ch211-198m17.1 LOC107581740,LOC107654530,LOC107737902,LOC107674687,LOC107720027 coding upstream 304607 14992043 ~ 15009115 (-)
znf281a znf281a,LOC107581742,LOC107654531,LOC107674693,LOC107591442,LOC107720029 coding upstream 327509 15014945 ~ 15026960 (-)
svilc LOC107581739,LOC107654532,LOC107591458,LOC107674723 coding upstream 410483 15097919 ~ 15121776 (-)
cdk21 cdk21,LOC107581773,LOC107591488,LOC107674697,LOC107720098,LOC107738149,LOC107654471 coding upstream 435110 15122546 ~ 15126368 (-)
G20231 NA non-coding downstream 28000 14603194 ~ 14604214 (-)
G20212 NA non-coding downstream 172660 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding downstream 181186 14449475 ~ 14451028 (-)
G20202 NA non-coding downstream 243816 14385361 ~ 14388398 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding downstream 410417 14220085 ~ 14221797 (-)
G20245 asic2,LOC107674665,LOC107737939,LOC107590420,LOC107654528,LOC102794937 non-coding upstream 162281 14849717 ~ 14851862 (-)
G20248 NA non-coding upstream 269303 14956739 ~ 14959287 (-)
G20253 NA non-coding upstream 300841 14988277 ~ 14989991 (-)
G20344 LOC107581796,LOC107738142,LOC107654462,LOC107591562,LOC107674600,LOC107720100 non-coding upstream 564659 15252095 ~ 15254617 (-)
G20338 aldoaa,LOC107581735,LOC107720037,LOC107674678,LOC102778271,LOC103381979 non-coding upstream 592911 15280347 ~ 15333486 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other downstream 192673 14435147 ~ 14439541 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 427864 14202930 ~ 14204350 (-)
G19933 NA other downstream 826236 13805368 ~ 13805978 (-)
gng13b NA other downstream 839612 13786009 ~ 13792602 (-)
G19700 NA other downstream 1584720 13047041 ~ 13047494 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 433370 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 454381 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 911334 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 1763704 16451140 ~ 16451800 (-)
LOC122341847 NA other upstream 1765638 16453074 ~ 16455479 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G197393 NA non-coding CI01000046 null 5249761 ~ 5256782 (+)