plcd3a (plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244)


Basic Information

Item Value
gene id plcd3a
gene name plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15120806 ~ 15179359 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30272
GCAGAGTCTGACACAGTAAACGAGTCACGGAGCGTGAGTTAATGACTCGTGTTCATCGGCGGAACACTTACCGTTCCTCGCCGTTTTTAGACGCGTCAAGCGTTACGACAGCCGtcactgcagcagcagcagcgcgagGATTCACATGCGCTGAGCCACACGTTAAAACGCGTTCTTCTGGATAGTTCGTGTCTATTGGTTATTCGCGTTTACCTCAAGAAGGCAGCAAGAACTTCTGCCTGGAGCCGAAGGGATATTCAACATGCTTGGGAGGAAGAAGAAACCAGAAACTGTTCAGACTGAACCCAAAGCGTACGAGTCGAAGACCCACGATCCGCTTCGGAGGCTTGGTGTGCTGGACGATGAAGATGTGCGGCTGATGCTGCAGGGGTCGAAGATGATGAAGGTTCGATCTCAGCGTTGGAGGAAGGACAGGAGCCTGAGGCTTCTGGAGGACTGTGTGACGGTGTGGTGCGAGTCCAGCAAAACCTCCCGCAAAGGCAAAAGACAGCAAACCTATGGATTGATAATCCGCTGTGAGAGTGAAGAGAGTCAGACTTCCTACTATAATTTCATTCACGATGCTTCAGTGGAGCATGAAAACATAGTTTCTCTCATTGGACCGCTGGTGTTGGTGGAACCTATTTAGGGAGCCTTCAGCCCCACTGTCATTTATCTCCACTGGATTGTCTCCGCTGTCATCACCCTCAAAAGtttcttttacatttgttgaaaACATTAGCTGCATAGAGGCATCTCAACctgaaaggcaaaaaaataaacttgtgaATTCAAACTTGTGACAACTTGCTCTTGAAGCACGAAATGTTTGGCCCACAAAACAAGGAGTTTAACAATCTTAAGACTTTAATCCTAAAATCACATATAGACTGTGAACAACAACTTTTGTGTAATAATACAGACATGTGAATGTATGCGTGTTATCGTTAATCTATTGTAGTCATATATTAATGGATTTTGAAACTTGTAAAGGTACAAACACAAAGCTGTACAGTAAAAAGCCCAgtttatgtgtttgtgaatAATCAGTGCTCTTAGATTTTTGAGTCATTCTGATGAGACCCTGAGGACTAAAGTGAACCTATAACCTAACTAATCATGTGACTCAGTGTGATTAACAATCACACGGTAGTACTAGTAGTcacttttgtgatttttctgtgtaaaatgttGATTATGTAATATTGTTATGTAATAACTAGTGTTTTCGTTGTAATTTGAACATGTTGGTTCTTGTTGCTTCTTTTGAATCGCTCCAAAATGCTGCTGTAGTAGTGTATACATATCTAGATGTATATCTAGATGCACCCTCAACAACATCAGAAGACACTCGCTCACCTGCCAACTATTAactttagtaaaacaaaaaaaacggtTTAAACGGTTTAGGACTTTATGCCAGTTCTTTGATATGCCAGAAGTCAACATGTAGTTAGTTGTGACACAGATCATGTGAAGCATATGAAGTTCAGTTCATACAGGCTCTGGAATAAAATATCAGTGTTCCTAAactgtaaacctttttttctgttcatttggaGGCAAATGTGACCCTCGGGTATATTTGTGGCCATAGGCtgaaatacattgtatgggtcaaaatgatcagttttgcttttattccacaaatcattaagatattaagtaaagatcatattttatgaagatattttttttaaatatcctaCTTTGAATATATCAagactttattttttcaataagtaatatgcattactcagaataatttgaacaactttaaagatgatcagtatttacttattactttttttttttttttgcaccctcagattccagattttcaaatagttgtctCCCCCGAATATTGTCCTGTcccaacaaaccatacatcaatagaaagcttattGATTaagtgtcacggtgtggtttgcgagagagaggaaaaagtaAACTTAAACGGTTTTAATCTTCTcgaaactaaataaacaatatatttacagacaggcaggcacaAAAACCTTAGGCATCAAAGACGAGAACCGACGATAAAACAGAAGCAACCTGGAATTTAAATACACACCGGAATTGACTAAACTAACacgacacagctgaagacaataagacaattaactgaaattacAGCACATGgtacatgaaaacacaaaacaaagagtccaaagaTGTGGCATTaaggtccagggtcacatatttggAAACAACAGTAAAAGTTTAtgcagttttattcatttttcagtatctatttaatatttagggGAATATTGTCAGATAGGTGATTTGAAAGTCATATGCATTTACTAGTATGTGTGTTGACATGGTAGTAAattattgtttcaaataaaaagtatttgtaGGTGAGTTGTTTCTAAAACATTGACAGACTGACCCCAAACTGTTGAATGGCAGAGTTACGTGAAACTCACTTGAAACACTTATGTTTGTCCTGCTCGACTCAGGAGACGAGACggcctctctctctgtttctgtcttgCGTTGCATCACACTGGCTTTAGGAATGCAGGGTCAGCTGCTCCTGTCCAATCCCAGCATGCCCCTCACTGCCACACACTTGAGGGAATAAACATAGTCCAAATAATAcataactgtgtgtgtttgcattctgtgtttgtgcgtgtgcaCCACTTCATCCCTTAGttattttggctattttttAAGGTAGATAAAGATAGTAGACACATGGTTATGGCGTAAGTGTCAAATAGCCTGCACTAAATGATGCCGGTGTGTGTAGGAGATGAGTGTGTGCCGGTGTCATTGTGCTCCTCATGCAGGGCTGGATCTCTGGAGAGCTCATGCTCCTGTGCATCTATGCAGCGGGCATTAGCGAGGAATGCCAGCGGCGTAGTAAACGCCCATTCACTGCACATGTCCGAGCACAAGCGCTGTTAAAATGAACACACTTCTTCTCTGTATACACAAGAATTATGAATGCATGTTTGTCAGCGTTTGGAAGTGGGCAGGGAGTCTTTGCCATTTAGAAGAGCATGTGTTTGTCTTGCCCTGCAGTCTCTGCgtgtgtctttgtttatttgcaacGTAGGAGTTTCCACAGGTCAAAGAAGTTATTGTCCTCGTGTAGATGACTTGAAGTGTACACttaatgtaaaacaatggaGGAGAATGAAAGTCCATCTAATACACAAATCTTTTATGTCTGATTGTCACTGTATTAGGAAAAGCATTTTGTAAATTGGTAATAAATGGTTGCCTGTCTAAAGCCTCGGCTTGTctatcaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag
>XM_043233692.1
tggttCGAAACAGTCCAAAGCCTATTTTTGCGACACCTGTTCATCAGCTAGGCAGACAAGTTAAAATGCaggctaaaaataaaagtaacaaatcAGTTACACAATCAACTTCTCGCACAGTTGACCATGAAGCAGAGTCTGACACAGTAAACGAGTCACGGAGCGTGAGTTAATGACTCGTGTTCATCGGCGGAACACTTACCGTTCCTCGCCGTTTTTAGACGCGTCAAGCGTTACGACAGCCGtcactgcagcagcagcagcgcgagGATTCACATGCGCTGAGCCACACGTTAAAACGCGTTCTTCTGGATAGTTCGTGTCTATTGGTTATTCGCGTTTACCTCAAGAAGGCAGCAAGAACTTCTGCCTGGAGCCGAAGGGATATTCAACATGCTTGGGAGGAAGAAGAAACCAGAAACTGTTCAGACTGAACCCAAAGCGTACGAGTCGAAGACCCACGATCCGCTTCGGAGGCTTGGTGTGCTGGACGATGAAGATGTGCGGCTGATGCTGCAGGGGTCGAAGATGATGAAGGTTCGATCTCAGCGTTGGAGGAAGGACAGGAGCCTGAGGCTTCTGGAGGACTGTGTGACGGTGTGGTGCGAGTCCAGCAAAACCTCCCGCAAAGGCAAAAGACAGCAAACCTTCTGCGTGACGGAGGTGGAGTGTGTGCGGGAGGGCTGCCAGTCGGAGTGTCTGCGACGAATGGCTGGTCTGGTCCCAGAGACACACTGCTTCACTGTGGTCTTTCGCGGAGCAAGGAAGAGCCTGGATCTGTGCTGCTCCACACAGGACGAAGCGGAGGGCTGGGTTCGAGGCCTCCGCATTCTCAAAGACCGCGTCTCCAACATGAGCCAGAAAGAAAAGCTGGACCATTGGATTCGAGGCTATCTGAGACGTGCGGATCAGAACCAGGATGGGAAGATGAGCTACGACGAGGTGAAACATCTGCTACAGCTGATCAACATTGACCTGAACGAACAGTATGCACGCACACTCTTTAAGAAGTGTGATCGCTCGTGTGATGGGCGACTGGATCACGTGGAGATCGAGGAGTTCTGCCGTGAGCTGATGCGCAGGCCGGAGCTGGACGCTGTGTTCAGGCATTATTCTGGTAACGGGTGTGTGCTCACCACCTTGGAGCTGAGGGATTTTCTCGGGGACCAGGGTGAAGACGCATCACTGGCCCATGCGAAGACTCTCATCCACACCTATGAGCTCAACGACTGGGCCCGGAAGAATTTGTTCATGACCCAGAACGGTTTCACCATGTACATGCTCTCGAAAGAGAACGATGTGTTTAACCCGGATCATGCCCACGTGTATCAGGACATGAGCAGACCCCTGGCGCACTACTACATCTCTTCTTCTCATAATACGTACCTCACCAAAGACCAGGTGACCAGCGCCAGCAGCACAGAGCCTTACATCAGagcTCTGCATCAGGGCTGTCGCTGTGTTGAGCTAGACTGCTGGGACGGTGATAAAGGAGAGCCTATGATCTTCCACGGACACACACTCACCTccaaagtgctttttaaagaagTCATTGAGACCATCGCTCAGTACGCCTTCAAGACATCTCCGTATCCTCTGATCTTGTCCCTGGAGAATCACTGCTCAGTGGAGCAGCAGGCAGTCATGGCCCAGCACCTTCGCTCTATCCTGGGAAAGAAGCTCCTGAGAAAGCCGCTCAATGACCTGCCCCTCAAAGACCTGCCCTCACCTGAGGAGCTGATGGGGCGGATCCTGCTGAAGGGGAAGAAGTTAGGTGGTCTCCTGGGGAAGATTGACAGCTGGACTAGCTTCTCATACAGCTCAGATGAAGAGTCTACTGCTGGAGGGGGCGGCAACAAAAAGGAATCCAAAAAGGATCCTGGGAGGTCTGTGAGCACTAAACTGAGTCCAGAGCTGTCAGATCTGGTGGTGTATTGTCAGAGCGTGCCCTTCAGTGGTTTTGAGACAGCCAGCCAGAGACCTCCTGGCATGATGTCTTCTTTCTCTGAGAATGAGGCGCTCAAACTCATCAAAGACTCAGGGAAGCTGTTTGTTCGACACAACAGTCGGCAGCTGAGCAGGGTTTACCCCTCAGGCCAGAGGTTACAGTCCTCCAACTACGACCCCCAGGACATGTGGAACGGAGGCTGCCAGATGGTGGCTCTGAACTTCCAGACCCCAGGAGAGCAGATGGACCTGAATCAGGGCCGCTTTCTGCCCAACGGCCGCTGCGGATACGTGCTCAAACCTGACTTCCTGTGTCACCCAAAGTCCAACTTTGACCCCGAGAACACGGGAGGAGGGCCAGGACATATACCCACACAGCTAACAGTACGGGTGATCTCGGCCCAGCAACTTCCTAAAATAAACGCAGACAATCCCAACTCCATTGTGGACCCACAGGTCTGGGTGGAGATCCATGGAGTTTCCATCGATAAGGCTCGCGCAAAAACACAGCGTATTGACAACAATGGCTTCAACCCTCGCTGGGACTGTACTGTGAGCTTTCAGCTGCAGGTGCCTGAGCTGGCCTTGGTGCGTTTTATGGTGGAAGATCACGACTACAAAtccaaaaatgatttcattggCCAGTTCACTCTCCCATTCACCAGCTTACGaacagGTTATCGTCACGTTCACCTGCTGAAAGCTGACGGCTCCAGTCTGTCTCCTGCCACCCTCTTCATCCATATCAAGGTGGTTCGGCGAGGAGTTCCTATTAAAACAGTTTCTGAGCGGCTTGGCAAGGCCTGAGGCTTCTGTTGTGATTCCTGGAAGTATTTATTTCTGGAAGTACCTTACTTAAGGAGAAGCCCCTGAGCTGGGCTCTCGAGGTGCTGGGACTCTTCAGAATGAGACCACTTGAAAAAGCATGTGAAATCGGACGTACAAGCACAACAATCTGCAGAAAGTCAGTGTAGACGTGTGATTCAAagtgcattttgctttttttttattgttcatttgtggTGTTGTCTGCAGAGCAGAACGTCTAAGCGTGTCACAGAAGTGTTACCGTGgaagttaaaaatgtcatgaAGTCAGTATTGTTCGATGTTACAAGTCAGTGTTGTTTATAGAGTCTGTTTCCATTGAGACCGATTTCTATTGAGTCTATGAGCCTTAcgaaaatgtaatcaaaatgccatattttaattgaacttAAACTAGTCTTTACATTAATTGTTTGTACATGTAGACAGAAATTAGCTGTCCCTaatgtttttatagtttgaATCTTTAATGTTTCTATAGTTTGAATTTTGCTGGTGGTTTTTTGATATGTTGTATGCTGACAGCCAGGTGAAGAAAgggaaaagaaagcaaaaaaaaacccttttgaaAGAATACTGGAAGCATAGCAAGTATATGGATGGTTTAGTAAGAGTAATGATTATGAATGAAGTATGTTTTAAACACCAACTGCGATTCAGCAGTATATTAGTAATATGAAGTCAGTAATTAAGTAATCAGAGTAGTAAGATGCTtatgaaatgataataataatatattaatacaattcatttgatagaaataatacattttaaatatttttaaactacgCTACCACTaacaatgaaatgtatttttaaccatGATTAGGAccgtttttatcatttaaagctAAAAGCAAGCGCTgaaattttcagttttgtagGATGTTCAAATTTAGTCAAATTCCATAACTTCACCTGTGCTACGTTAATGAAGACACAGGCAACAATAGCACTTTCCATTAGAATCATATTCAAGTTGTTGAATTGTGAAAATTTGTGATTATTGAACTCATAAAGATCTATGTTTCGTATTAGGCTTGATAATTAATTTATAGAAGCAGCTGACATTATACTAAATACGTGTTTTAAACGGagatattatttttctgttacaCAGTAGACAACACAACAGTCTTGATTTTAATGTCTTACTTGTTTATAGAGTACTGTATTTGGATGTTTGTGTATACCTGCATAATTAATtcgtttttaagttttattgaAATAGATAATCactaattaatgaaattaatatcaaaactatttttatgtcattaatatCAGACATCAATTGGAAATCTTTACACATTTAAGCATAGATACTAATTAGGTTGGATaaacatttttgcttgtttggtgatttttgaaaacatgaaGATGTGTGAATCAGTCTCCATTGTGCAGTTGTGctcattcattgtttttattgattcatGGAAAGATGTAGTGCCTTTGAAAGCATGCCTAGATTTTATAAAttcaaaaaatctaattgta

Function

symbol description
plcd3a Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process. Predicted to be located in cleavage furrow and cytoplasm. Is expressed in spinal cord. Orthologous to human PLCD3 (phospholipase C delta 3).
plcd3 Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within angiogenesis; labyrinthine layer blood vessel development; and regulation of cell population proliferation. Predicted to be located in plasma membrane.

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3 isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
TU30272 False 3309 TUCP 0.40 4 15120806 15179228
XM_043233692.1 True 4274 mRNA 0.45 15 15158749 15179359

Neighbor

gene id symbol gene type direction distance location
znf281a znf281a,LOC107581742,LOC107654531,LOC107674693,LOC107591442,LOC107720029 coding downstream 93846 15014945 ~ 15026960 (-)
si:ch211-198m17.1 LOC107581740,LOC107654530,LOC107737902,LOC107674687,LOC107720027 coding downstream 111691 14992043 ~ 15009115 (-)
mpp3a mpp3a,mpp3,LOC107654527,LOC107737916,LOC107720025,LOC107674727,LOC107591370 coding downstream 133666 14967925 ~ 14987140 (-)
baxa baxa,LOC107601305,LOC107721480,LOC107674732,LOC107720019 coding downstream 455973 14657730 ~ 14664833 (-)
gpatch8 LOC107721478,LOC107654521,LOC107674594,LOC107601302,LOC107720016 coding downstream 479678 14610261 ~ 14641128 (-)
arhgap23a LOC107581737,LOC107654534,LOC107591523 coding upstream 1243 15180602 ~ 15243122 (-)
fam83ga LOC107738115,LOC107654540,LOC107581794 coding upstream 122889 15302248 ~ 15309607 (-)
grapa grapa,LOC107654542,LOC107720042,LOC107581733,LOC107737776,LOC107592716,LOC107674739,LOC108430571 coding upstream 130386 15309745 ~ 15316561 (-)
b9d1 b9d1,LOC107737762,LOC107674617,LOC107654544 coding upstream 159603 15338962 ~ 15341877 (-)
llgl1 llgl1,LOC107720045,LOC107674688,LOC107703430 coding upstream 282935 15462294 ~ 15491956 (-)
G20253 NA non-coding downstream 130815 14988277 ~ 14989991 (-)
G20248 NA non-coding downstream 161519 14956739 ~ 14959287 (-)
G20245 asic2,LOC107674665,LOC107737939,LOC107590420,LOC107654528,LOC102794937 non-coding downstream 268944 14849717 ~ 14851862 (-)
G20233 asic2,LOC107720021,LOC107654528,LOC107601227,LOC107674665,LOC107720082,LOC107590422 non-coding downstream 433370 14632214 ~ 14687436 (-)
G20225 NA non-coding downstream 449237 14665914 ~ 14671569 (-)
G20344 LOC107581796,LOC107738142,LOC107654462,LOC107591562,LOC107674600,LOC107720100 non-coding upstream 72736 15252095 ~ 15254617 (-)
G20338 aldoaa,LOC107581735,LOC107720037,LOC107674678,LOC102778271,LOC103381979 non-coding upstream 100988 15280347 ~ 15333486 (-)
G20352 epn2,LOC107674690,LOC107720043,LOC107654543 non-coding upstream 140351 15319710 ~ 15324611 (-)
G20363 NA non-coding upstream 186777 15366136 ~ 15366451 (-)
G20546 NA non-coding upstream 455713 15635072 ~ 15637612 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other downstream 681265 14435147 ~ 14439541 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 916456 14202930 ~ 14204350 (-)
G19933 NA other downstream 1314828 13805368 ~ 13805978 (-)
gng13b NA other downstream 1328204 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 2052616 13005996 ~ 13068190 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 419411 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 1271781 16451140 ~ 16451800 (-)
LOC122341847 NA other upstream 1273715 16453074 ~ 16455479 (-)
mafk mafk,LOC107703391,LOC107674662 other upstream 1536362 16715721 ~ 16729689 (-)
uncx uncx,LOC107703385,LOC107674712,LOC107568937,LOC107745590 other upstream 1683366 16862725 ~ 16873987 (-)

Expression


Co-expression Network