G20344 (LOC107581796,LOC107738142,LOC107654462,LOC107591562,LOC107674600,LOC107720100)


Basic Information

Item Value
gene id G20344
gene name LOC107581796,LOC107738142,LOC107654462,LOC107591562,LOC107674600,LOC107720100
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15252095 ~ 15254617 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30330
cctgctccggagcCCCATCCTGCCGCCCAGCATTGAGTGTTAGCGCTGAAGGTATTGTCTCCCATGTCCACACATATAGGCTGAATGAAATTTGTGAGGTTTGGTGCAACGGCCAGCTGCAAGACTGCAATGTTGTCGCCTGTACCATTGCTGATTGTGAGATTGGCCACTTTAATAGAGACCTCATTAGGGTTGGAGCCGTTCTGATTCAGACGGCCCAAGATGACGGTCCAGTCAGAGGCTTTGGTGGATCTGAAGAGAAAAAGCGCTGTTGAATCGGATGATTTCGATTTCccagcatatatttttatgtttggtgTTCGAGGGGAATTACCTGTTAAAGCAGCTGGCAGAGCTCATGACAAAGCGTGCGGCAATCAGCGATCCTCCACAAACGTGACTGCCGTTAAACTGCAAGCTGGCCATCCACGGCCAAACAACGGAAGAGGTGAGGGAGCTGTTTCCTCCAATACGGGTGTTCAGTTTGGCGCTTCCACACACTACAGCTAGTGCGACAGTTGTAGTTGTTGTTGTGGTGGCGACAGTGGTTGTGGTAATGGCAGGCACACCATTACAGCTAATTGCCAGGTCACCGTCAGTACCATTGGAAGTAAACGTAACAAAGCCTGGCTGGCTGGTGGTGATCTGGTTATTTATCCAGCTCTGGTAATTAGACACTCGGGTATACACACCAGGATAGTTAGCTAAAGCACAGCCTTCGCCAAAGCTCACGATTCCAGACTGGACCCAGAGGGAGCCCAGCTTGCTGACCATAGGACCGCCAGAGTCACCCTGTAGGATGAAGAACGGGTTAGTGACATGGCTTGTAACCCTTTTTTACACAGGCCAGCTGTACTTCTtgtgtgtaatatgtaatatgaaggaataatggaaagaaaacattcaatagTTTGATTTCACAAACAACAAATGTGattctggagcacaaaagcagtcataagtagTATAGGGTTTGTAGCAACAGCTAACAATAAATTTTATGGGTCAAAAAGTAGCTTTCATTTGCTCTGTAAGATTTCAAATTTTAACAATTAGACAATTATTGTACTATCCTAACAAACAatgcatcaatggaaagcaATGAAAAGCTGACATTTATTTAGCTTTGAGATGCTGTATAAACCTCATTTTATTACTGATTTTGTCTTCACGTCACACTCCTACCCACACAATATGAAGACATAAAGATATagatctttatattttaataaggaGATCCTTCACAAGTTTGAGATCCCTTgtaattaaaaagctaaaaaaaaaacctgatctACACAACAGTCTCACTTCTCCTTCATTACGGCACAAATGTCAGGAAGATTTTCTAAACTGGGACAAAAGtgtttaatgcataaaacagATCCTTTACTATGTTTTACTAATGTATAATGTACTCAGTCATTGACTCTGCGGGCAAGACCTCAAATATTTGAGTTTTGCACTGAACCGACAGTGTTGAAATCAAAGTTTAAGagaaacacattattattaatgctatttTCACTGCAGGATATTTGCAACCCAATAAAACTAGCAAAATGTTTAAGTTTAAGACTCagctaaaaatctttttaattagtattaacaaatagtaaatagtaaagtGGCTATATTTGGCCTAATGTGTTTGTATTGTCTATTTGGGTGTGGACATGTTTTGTCATTATATAAAGTGACCTTGAGCAACGAATaggtgctatataaataaaacaacttctACTGCATGACCAAAATGGTTATATAGGAGTTGTTACCTGGCAAGAGTCTTTCCCTCCTTCTAATAGTCCGGCACATATCATGTTGTCTGTGATTTTTGAGACTCCATAAAGACACTTACACTGCCTGTTTCCAACAACAGGCACTTGTACTTCCTGTAGAGTTTGCGGCGAGGGCAGCGCAACTGTGAAAGACGTGAAATAATCGAATCTGCATCACTCCTGCAATAACATCGTCAATCAAGGTTAATAAAACTAAAGAACTTACCACCTGATCCAATGTTTCCCCATCCGGTGACCCAGCTCGCAGTTCGGTTGAAGAACGTACTGCTTGATGAAGCCAGACAGACTGGTCTGATGTAGTCAGTAAATGTCACCGGTGAAGACAGATGCAGAAGAGTGATGTCGTTGTCATTAGTGCTGCCATCGTAGCCTAAATGCTTTATGACTGCAGACACAGTCCTGGACACTTCGTTTGTATTTGTTCCTGACTGTGTCTGTCGGCCCAGGTACACAGTCAGGCCAGCGGGTGTAGT

Function

NR:

description
PREDICTED: transmembrane protease serine 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30330 True 2272 lncRNA 0.42 2 15252095 15254617

Neighbor

gene id symbol gene type direction distance location
arhgap23a LOC107581737,LOC107654534,LOC107591523 coding downstream 8973 15180602 ~ 15243122 (-)
nmt1a nmt1,nmt1a,LOC107737859,LOC102778525 coding downstream 93754 15149891 ~ 15158341 (-)
LOC122341310 LOC107674591 coding downstream 103950 15146294 ~ 15148145 (-)
LOC122341946 LOC107720104,LOC107592690,LOC107674628 coding downstream 111074 15138220 ~ 15141021 (-)
LOC122341944 retsat,zgc:154169,LOC107737865,LOC107720034,LOC107674695 coding downstream 114201 15131415 ~ 15137894 (-)
fam83ga LOC107738115,LOC107654540,LOC107581794 coding upstream 47631 15302248 ~ 15309607 (-)
grapa grapa,LOC107654542,LOC107720042,LOC107581733,LOC107737776,LOC107592716,LOC107674739,LOC108430571 coding upstream 55128 15309745 ~ 15316561 (-)
b9d1 b9d1,LOC107737762,LOC107674617,LOC107654544 coding upstream 84345 15338962 ~ 15341877 (-)
llgl1 llgl1,LOC107720045,LOC107674688,LOC107703430 coding upstream 207677 15462294 ~ 15491956 (-)
myo15aa myo15a,LOC107703324,LOC107581768,LOC107737980,LOC107720090,LOC107674587,LOC107592412 coding upstream 239783 15494400 ~ 15523417 (-)
G20253 NA non-coding downstream 262104 14988277 ~ 14989991 (-)
G20248 NA non-coding downstream 292808 14956739 ~ 14959287 (-)
G20245 asic2,LOC107674665,LOC107737939,LOC107590420,LOC107654528,LOC102794937 non-coding downstream 400233 14849717 ~ 14851862 (-)
G20233 asic2,LOC107720021,LOC107654528,LOC107601227,LOC107674665,LOC107720082,LOC107590422 non-coding downstream 564659 14632214 ~ 14687436 (-)
G20225 NA non-coding downstream 580526 14665914 ~ 14671569 (-)
G20338 aldoaa,LOC107581735,LOC107720037,LOC107674678,LOC102778271,LOC103381979 non-coding upstream 25730 15280347 ~ 15333486 (-)
G20352 epn2,LOC107674690,LOC107720043,LOC107654543 non-coding upstream 65093 15319710 ~ 15324611 (-)
G20363 NA non-coding upstream 111519 15366136 ~ 15366451 (-)
G20546 NA non-coding upstream 380455 15635072 ~ 15637612 (-)
G20571 NA non-coding upstream 566602 15821219 ~ 15821945 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other downstream 72736 15120806 ~ 15179359 (-)
LOC122341947 NA other downstream 106487 15141817 ~ 15145608 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other downstream 812554 14435147 ~ 14439541 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 1047745 14202930 ~ 14204350 (-)
G19933 NA other downstream 1446117 13805368 ~ 13805978 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 344153 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 1196523 16451140 ~ 16451800 (-)
LOC122341847 NA other upstream 1198457 16453074 ~ 16455479 (-)
mafk mafk,LOC107703391,LOC107674662 other upstream 1461104 16715721 ~ 16729689 (-)
uncx uncx,LOC107703385,LOC107674712,LOC107568937,LOC107745590 other upstream 1608108 16862725 ~ 16873987 (-)

Expression


Co-expression Network