fscn1a (fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060)


Basic Information

Item Value
gene id fscn1a
gene name fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15706936 ~ 15744194 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30435
ttttttgttttcatgTTTGAAGTACGGCAGTGCTTTGTGTACTGCCTTGCTATCTGTGCcattagaaataattttaatgtttaaaaaaaaaaaaaaaaaaaagaggaagaacCAAGAAAACTGGATTGGTACAGTACAGTCCCTCATCTCAAAATTAGGGTTACGTTTGGAACTGCAAATGGGCgggtggggaaaaaaagtatagaTATTAAAGTGGAAATAGTTTTCTGCAACTCGAAagtgatgtcattgtgtgtgaagATACTGACGTGTGGTATGTTGTTGCAGGTTCAACACAGTATTTATGCTAAATTAAACCACTTTTCCCCTCTTAACTGGACAAATCTTAAAGGAATGGCGGGTCTGGCTTCACTGGACTCGTGCAGTGGTCTAATCTGGAAATATCACTtaacgctttttttttgttgtttttgagcaGGCACAGACATTATCATAAACCTTATTCCTTTAAACACATTACACCAAAATGAAGACATTAACACGCCACATAGGATTGCTTAAAGATTTAAACGTGCGATTAAACTGGTGCTTAATTAGTTTTCAGGTGTGCATCAAACTAACCGAACCACTCTGAGCTTAACTGCTCATTGTTTTAAGAACAGAGCCATCATTTCACAAGACAATGACCTCCCGTTGCTAAGGGAATGATAATGACTGTGCCTTAAAAGACCATTATGGGGGGGAGGGAGACATTCCACATTATACTTTGTAAAGTctttacaaatgtctttttatattgttttgatatTATGGTTATGTTTCCTCATGTGCCATGGGTACAAATGAAATCtggaa
>XM_043235355.1
CGCATTTGGAAACGAAGCATTTTTGTTAAACTCTTTCACAAGTGAAAATATCATCCAATTCTGTGTTTCCCGACTCATTTTGGTACGTGAGAGAGTGATGAAGGAAGGCGGGACGGCGCGTGTGACATCACTCATCTGTATAAAAGCCAcagctgtgtctgtgtgctCGCGCTGTGaggctgcagagagagagaggcgcgCGCACGCTCGCTCCTTCAAACAAAGAGACCCGTCAACATCATCAACGGTGCACCAGCAGAACCCATTCCAGCAAGGCCGAGAAGAAACATGACTGCAAACGGAACCAGCGACATGCTCAAAATCCAATTCGGACTGATCAACTGTGGGAACAAGTACCTCACGGCTGAAACGTTCGGCTTCAAGATCAATGCATCAGCCACCAGCATGAAGAAGAAACAGATCTGGACCCTGGAGCAGAACGGCGACGACTCGAGCACGTTCTACCTGAAGAGCCATCTGGGGAGATACATAGCAGCTGACAAAGACGGCAACGTGACGGGTGACAGCGAGACCCCGAGCGAAGACTGTCGGTTCGTGATCACTGCACATGATGATGGGCGCTGGTCACTGCAGTCTGAGCCTCACAAGCGCTACCTGGGCGGCACCGAGGACAGAATCACCTGCTTCGCCCAGACCATCTCCATCGCAGAGAAATGGAGCGTGCACATCGCCATGCACCCCCAGGTCAACATCTTCAGCGTCACCAGGAAAAGATACGCGCACCTGAGCACCGAACAGAGCGAGATCGCCATCGACCGAGACGTTCCCTGGGGCGTCGATTCCCTCATCACCTTGGTCTTCCAGGACCAGAGGTACCACATACAGACATCCGACAACCGGTTTCTGAAGAATGACGGAAGCCTGTCCCCAAACCCCGACAAGAGCACGGGGTACACGCTGGAGTTCAGGTCCGGGAAGGTTGCCTTCAGAGACTGCACTGGGAAGTACCTGGCTCCCTCCGGTCCCAGTGGAACCATGAAGTCCGGTAAGAGCTCGAAGGTTGGCAAAGACGAGCTTTTTGTCCTGGAGCAGAGCCACCCTCAAGTGGTCCTCACCGCTGGCAACGACAGGAATGTGTCCACCAGGCAAGGCATGGACCTCTCGGCCAACCAAGATGAAGAAGGTGACCAGGAGACTTTCCAGATGGAAATCAGTAAGGACACAAAGAAGTGTGCCTTCAGGACCTGCACTGGCAAATACTGGACCCTCACAGCTAATGGTGGCCTTCAATGCACTGCCTCTACTAAGTCTGCTAACTGCCACTTTGACATTGAATGGCGTGGGAAGAAGATAACCCTGCGTGCCAACAATGGAAAATATGTGGCTGCCAAAAAGAACGGACAGCTGGCTGCCACTATTGACACAGCAGgtgaGACCGAGGAGTTCCTGATGAAGCTCATCAACAGGCCCCTCATCGTGCTGAGAGGAGAGCATGGCTTCATTGGCTGCAGGAAGGTGACCGGCACCCTGGACTCTAACCGCTCGTCATATGACGTCTTCGGGTTGGAGTTCAGAGATGGAGCCTATAGCCTGCGAGACTGCACAGGGAAATACTGGATGGTGGGCAGTGAGTCGAATGTGCTGAGCAGTAGCGACACCCCGGTGGACTTCTTCCTCGAGTTTTGCGACTACAACAAAGTGGCCATAAAGTCAACCGAGGGGAAATATCTGAAGGGCGATCACGCAGGTGTTCTGAAGGCCAACGCCGACGATCTGGACACCTCCACTATGTGGGAGTACTAAAAGCACTTAAGTAACCACTGTGGCTTTTTCTTTCCAGTTTTTCCCTTTCTGTTATGCGTTTTGAATATGGTTTTTGAATACAAGTGAGCACACAGGCCGATAGCAGAGAGAAACCCAAAGGTGAAGGGTCTTGCTTCTAGTCACGTATACTTGATTCTGTCTGAATacttcagtgtttgtgtgccACCTCATTACCGCAGCGTGGTGCGCTTTTCATTGACGGTGAGTGGCCAAAACTGGGACCCAACTGGCATCCAAATTTGTGTTGTGTGGTTAAGCACATCTAGTTTCATCTCATACTAATCGACAAGTCGGTTTGCTCTCTGGAAGATCGACTATGCGGGCGACACAGGATTTTGATGTACCAGATTGTAGCGTGATCCCTCTTCCTAGTCTTTGCACAGTCCTGTATGAGCCTCGCACTCTTGATATTAACACATAGCAAAATATGTTAAAGAAAACCTTGTGACTGTGAGCTATTGATGATGTAATGCCTCCCACTGTATTGCCAGTCATAAGTACCTACCCTCATGACCCGAGGACTAAGGCAATATTTACAGGTAAATGTATGAatgtttagggtttttttttttttctttctatacaCTTGACAGAGTTATGAAGGAAGCTCTCGGGCCACTGAAAAGGCgttgagctttttttttgtttccagtgTTTGAAGTACGGCAGTGCTTTGTGTACTGCCTTGCTATCTGTGCcattagaaataattttaatgtttaaaaaaaaaaaaaaaaaaaagaggaagaacCAAGAAAACTGGATTGGTACAGTACAGTCCCTCATCTCAAAATTAGGGTTACGTTTGGAACTGCAAATGGGCgggtggggaaaaaaagtatagaTATTAAAGTGGAAATAGTTTTCTGCAACTCGAAagtgatgtcattgtgtgtgaagATACTGACGTGTGGTATGTTGTTGCAGGTTCAACACAGTATTTATGCTAAATTAAACCACTTTTCCCCTCTTAACTGGACAAATCTTAAAGGAATGGCGGGTCTGGCTTCACTGGACTCGTGCAGTGGTCTAATCTGGAAATATCACTtaacgctttttttttgttgtttttgagcaGGCACAGACATTATCATAAACCTTATTCCTTTAAACACATTACACCAAAATGAAGACATTAACACGCCACATAGGATTGCTTAAAGATTTAAACGTGCGATTAAACTGGTGCTTAATTAGTTTTCAGGTGTGCATCAAACTAACCGAACCACTCTGAGCTTAACTGCTCATTGTTTTAAGAACAGAGCCATCATTTCACAAGACAATGACCTCCCGTTGCTAAGGGAATGATAATGACTGTGCCTTAAAAGACCATTATGGGGGGGAGGGAGACATTCCACATTATACTTTGTAAAGTctttacaaatgtctttttatattgttttgatatTATGGTTATGTTTCCTCATGTGCCATGGGTACAAATGAAATCtggaaataaatacagtttgaaTATGAAA

Function

symbol description
fscn1a Enables actin filament binding activity; protein-macromolecule adaptor activity; and signaling receptor binding activity. Acts upstream of or within several processes, including animal organ development; epiboly; and pharyngeal system development. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including lamellipodium; microvillus; and ruffle. Is expressed in several structures, including head; mesoderm; nervous system; neural crest; and neural plate. Orthologous to human FSCN1 (fascin actin-bundling protein 1).

NR:

description
PREDICTED: fascin

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K23551 FSCN1; fascin 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU30435 False 816 lncRNA 0.37 2 15706936 15744171
XM_043235355.1 True 3263 mRNA 0.47 5 15737339 15744194

Neighbor

gene id symbol gene type direction distance location
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 9562 15639017 ~ 15697374 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding upstream 88872 15608385 ~ 15618064 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding upstream 108224 15595214 ~ 15598712 (+)
bud31 bud31,LOC107737741,LOC107720055 coding upstream 111863 15593873 ~ 15595073 (+)
smcr8a LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684 coding upstream 123535 15578600 ~ 15583401 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding downstream 75460 15819654 ~ 15823435 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding downstream 79582 15823776 ~ 15828983 (+)
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding downstream 90889 15835083 ~ 15846966 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding downstream 406659 16150853 ~ 16175090 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 468173 16212367 ~ 16221215 (+)
G20415 NA non-coding upstream 118127 15587212 ~ 15588809 (+)
G20269 NA non-coding upstream 568036 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 713899 14990229 ~ 14993037 (+)
G20179 NA non-coding upstream 716944 14972299 ~ 14989992 (+)
G20183 NA non-coding upstream 735275 14971012 ~ 14971661 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 117819 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 128608 15872802 ~ 15873925 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding downstream 129839 15874033 ~ 15875959 (+)
G20468 NA non-coding downstream 133995 15878189 ~ 15878426 (+)
G20469 NA non-coding downstream 134936 15879130 ~ 15879329 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 426823 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 522063 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 537678 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1035368 14664919 ~ 14671568 (+)
G20167 NA other upstream 1084078 14618994 ~ 14622858 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 435426 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 946509 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 1026351 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1368854 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 1393736 17137930 ~ 17200630 (+)

Expression


Co-expression Network