LOC122334397


Basic Information

Item Value
gene id LOC122334397
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15714732 ~ 15727870 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30436
CCTGATTGGTCTGCCTTCCCCCACTTCGGCGTCCCCATCCATCTCTAAATAAGGAAGCAGAGGGATGAAGAAGGAAACAGGGTGAACTGAATAAGAATGGAAGCAAAGGGGAATCCAGAGCCTGCTTCAGTCCTGACCTTGAGATCTGTCATATCAGCAGCTGCAAGGACATGCATTCCAGCTCCTCAGATCCTGTTCCCTATCCATCTGACACACTTTGCACATGAAGATCAATGGAGCCAAGGGCAGTGTGTAAGGGGATCCAGG
>XR_006248753.1
GGGAAGCCAGACTGTTTGAAGAGCCAGGCCTAGGCGATTTTGATCAAAATCGGCCTTTTTGTTTGCGAATTTTAAAACGTTGCTTTCCGTATTCCCGTGTTTCTGTGTTTCAAAAAGGCTGTGCAAAGGTTACAAGTGCTAGTGTTGGTCATAGTGCTGGACATCTAATTGATCCTGTGTTGTGTTTACAGTCTAACACAACAGCATCTCTATCGGACTGGGGTCTTGTTACAGCAGATGTGCTTTTGTGAGTCCATAGTTCCCCTGAGGACCACCACCCTTCCCTGATTGGTCTGCCTTCCCCCACTTCGGCGTCCCCATCCATCTCTAAATAAGGAAGCAGAGGGATGAAGAAGGAAACAGGGTGAACTGAATAAGAATGGAAGCAAAGGGGAATCCAGAGCCTGCTTCAGGTCTGTGACAGCTATGCCCTAAAAAGGTAATCCAGTCTGTGGGCATGATGGGAGGGGCACTGAAGTAAAGAGAGAGGCAGAAGCACAGGCCAGGTAACAACTGTCTCCCTCTTGGAGCCGGTTGTCCTAACCAATTAGCTGCGGCCTTGTTTTACTTTATgactgtgtaaatatatatgggGAAGCCATCTAAATAGCTGTCCCATCGACCATTGTGACCATTGTATTACAGGTAAGCACTACCCTTGTCCCACCTATGCCTTTAAGGCATGTTGCAATGCCAAAAAAGGCAATTGAAAGTTGACAGCAGGGATTGGCAAAACACGTCTGGAAATTTTGATCCCGTCtttccctctgtctctctctctctctattttctcttttcactgtctctgtctctctgctccTCATTTCTTCTCTCAGAACGAGGGATTAGTGTACAGATATGATGAAAAATATGTGTTTGACCAGCTATATTCACAGAACCTGTACTGTGAACATTAAGGCTTCCAAAATAAGATGATATTTCCAGAATGGATGGAATATTTGGGTCAGATGTTCAGCTCAAGGGAAGAGCATGCTGAAATGACACATTTAccatattcaaatatttgtttgtgtttccagTGATTTCTATCTGTGATGAACACAGAAGCTATCTTGAGCAAAACTTGTTAATGGCAAATTGTAATTGGAGTCAAGTGtgatctcaaaaaaaaaaattattgtaatttatcaACTGTGTgttgaagtttttattttagtagcaacatatattttaatttcatatcgGTTATATGTACTGGTttgttgaaaaagaaaaaaaacgtggGCCAAGACTTGGTTCTGTTCACCAGCTGATTTGAAGGAGCAAGACCTGAGAAGTGAGCTCACAGTCAATTGTTAGAGAGGGTTTAAGATGACTAAATGATTGCTGAAGTTTAGTATACATCTCCAGAGAGGAGTCTGATGTTTAACTGGATGGATATTACATTCTGATTAAACATTATCTATAAGCTTTAAACATTCAATGTGCAGGAATAAATTGTTCATAGCAAggtcaatt

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005215 transporter activity molecular_function
GO:0015114 phosphate ion transmembrane transporter activity molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism
ko03320 PPAR signaling pathway
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU30436 False 267 lncRNA 0.51 3 15716197 15727870
XR_006248753.1 True 1479 lncRNA 0.41 3 15714732 15725356

Neighbor

gene id symbol gene type direction distance location
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 17358 15639017 ~ 15697374 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding upstream 96668 15608385 ~ 15618064 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding upstream 116020 15595214 ~ 15598712 (+)
bud31 bud31,LOC107737741,LOC107720055 coding upstream 119659 15593873 ~ 15595073 (+)
smcr8a LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684 coding upstream 131331 15578600 ~ 15583401 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding downstream 91784 15819654 ~ 15823435 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding downstream 95906 15823776 ~ 15828983 (+)
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding downstream 107213 15835083 ~ 15846966 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding downstream 422983 16150853 ~ 16175090 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 484497 16212367 ~ 16221215 (+)
G20415 NA non-coding upstream 125923 15587212 ~ 15588809 (+)
G20269 NA non-coding upstream 575832 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 721695 14990229 ~ 14993037 (+)
G20179 NA non-coding upstream 724740 14972299 ~ 14989992 (+)
G20183 NA non-coding upstream 743071 14971012 ~ 14971661 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 134143 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 144932 15872802 ~ 15873925 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding downstream 146163 15874033 ~ 15875959 (+)
G20468 NA non-coding downstream 150319 15878189 ~ 15878426 (+)
G20469 NA non-coding downstream 151260 15879130 ~ 15879329 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 434619 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 529859 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 545474 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1043164 14664919 ~ 14671568 (+)
G20167 NA other upstream 1091874 14618994 ~ 14622858 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 451750 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 962833 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 1042675 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1385178 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 1410060 17137930 ~ 17200630 (+)

Expression


Co-expression Network