G20452 (LOC107674632,LOC107720067,LOC107591813,LOC107748300)


Basic Information

Item Value
gene id G20452
gene name LOC107674632,LOC107720067,LOC107591813,LOC107748300
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15862013 ~ 15864962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30474
CTTTGATCTCCGGGTCCCTCTCCAGAGCCTGATGAGGTGGTGTTAGCCAGGATATAGCCATTGGGGGAGCTGGTCGAGGTGGTCACTACACGAACCATGGTGACAGCTGGCGCCTGCTGCACCACATGGATGGCCTGACCAGAGGCCTGGGAGGAGCTAATGATGGAGGCCGGCATGTAAGCCACAGGCTTGGGTATCGCggctgaggactgaggtggcaCGGCCATGATTACAGGCTGAGCGCTCACTGGAGAGCCTTGGTGCACTCTGGGAGTATCGGTACTCTGGCACAGAAGCAAGCTTAGAACCAAAGTCATGCTCATGAGACACTGGTGATCCTTCCCGTGACAGACACTCAGGGGTCTGGAGGCCGCTCGAGTGAGGAGAGAGAAGGCCGGAGTGGGTGGGAGATGCTGGAGCACTCCTGAAATCAACACAATGTGTCAGTCATACGCCACATAAAAAATGTCTGTGAACACATGCTGTGCTACACATACATGTTCAGATGTTACTCGCAAAGCAGGGtccaaaaataactttttgccTCACCTGCCTAAATTGTACGGCAACATTTTccagcgtaaaaaaaaaaggtgcagaGACAACTTTCAAAAAGAACTTCAACTTCAACATTACAtcaaaaaactttttgtttgtgtgaactACTACTTTCCACTATGGATACAGATCTCAAGATCTCTTCAGATCTCTTGACAGTTTAACAGGGGAGCCTAAGCTTAGTAACCAAAAACTGCCCTTTAGATTTACCCAAAGCAAATGATATCTCATATTTAACCACTATAGAGACATCAGAAGATCTGGATGAGGTAAGGATGCTTCATGAGCTGAACGCTCGCTGACGCCCTGGAGCTCACGTCTCGGAAAATGTAGATTAGTACAGttatgcatttctttgtaaatacatttttaaatagacattATGAGCTAACAGCATATTTGAAGACTACACAAGTACAAGTACAAGCAATTCTCACCTAAAAAAGCTCTTGAAACTTTCATGACACAAAACATTTactatttgtaaaatgtattatttataatattttatttgatttgggaATCTGCCATGACTCTCTATGTTTACATGCAACCAAATAATCAGTTTTTAACTTGGACTGATGGCTCAATTAGACTAAAAAGCCTTCATGTAAACACCTTAATCGATCCAAATTAGCTtgattggaataaaaaaaaaaaaaacaacagttaatTTTGGACCCAAGTTTAATGCAAGAGTATACAGAGTGTTAAAAGCAGAGAGCATAAGGGTGGCTGTGACTGATGCTGCTTTATCAAATGGCTCCTTAACAAACAAATGACACGGATCAAATACAAAGAGGCGACACTTACTTCGTTCTGCCCAGTGAAGAAACAGACAGAAGGGGAATAAAAGGGGAAACAGAATAGGCTAAGCAGGCTTCTATTACATTAGAAAGTGTGAGTGTTATAAGGGGACAGAGGGTGAGTGCAGGGTTAGTGGGGGTCTGAGATGTCTCACCTTGAGGACATCGGGCCAAAGGGTGTGCGGAAACAGGACACTCCTCTCTGCCGGCGCTTTCTGAAGGCCTGCTCCACCAACTTGGACTCTGAAGAGGGGTCCACACGCCAGAACGAACCTTTTCCTGGCTCTTCCTGCGAGCGTGGCACTTTAATAAAGTAGCGGTTCAGAGATAGGTTGTGTCTAATGGAGTTCTGAAGTGAAATGAGATTAAGAGAACGCAAATTAGCGCACAAACATGACAGGCAAAGTAACCacaatatttagcaaataaCCCTACCTGCCAGCCTTTGTCGGCCGTCCTGTAGTAGGGGTAATGCTTGGTGATGTGAGCGTAGATGCCACTTAGTGTTAGCTGTCTGTCAGGGGCAGACGAGATGGCCTGGACTATCAGCTGAGCGTACGAGTATGGAGGTTTGGACTCATC

Function

NR:

description
PREDICTED: forkhead box protein K1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30474 True 1946 lncRNA 0.45 2 15862013 15864962

Neighbor

gene id symbol gene type direction distance location
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding upstream 15047 15835083 ~ 15846966 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding upstream 33030 15823776 ~ 15828983 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding upstream 38578 15819654 ~ 15823435 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 164639 15639017 ~ 15697374 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding upstream 243949 15608385 ~ 15618064 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding downstream 285891 16150853 ~ 16175090 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 347405 16212367 ~ 16221215 (+)
chst12a chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724 coding downstream 357238 16222200 ~ 16229178 (+)
lfng lfng,LOC107703400,LOC107674646,LOC107758333 coding downstream 428260 16293222 ~ 16301224 (+)
snx8a snx8,LOC107758331,LOC107592787,LOC107674736,LOC107703396 coding downstream 494950 16359912 ~ 16369501 (+)
LOC122334397 NA non-coding upstream 134143 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding upstream 140710 15720247 ~ 15721303 (+)
G20415 NA non-coding upstream 273204 15587212 ~ 15588809 (+)
G20269 NA non-coding upstream 723113 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 868976 14990229 ~ 14993037 (+)
G20465 NA non-coding downstream 7840 15872802 ~ 15873925 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding downstream 9071 15874033 ~ 15875959 (+)
G20468 NA non-coding downstream 13227 15878189 ~ 15878426 (+)
G20469 NA non-coding downstream 14168 15879130 ~ 15879329 (+)
LOC122333245 NA non-coding downstream 14506 15879468 ~ 15880669 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 117819 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 581900 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 677140 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 692755 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1190445 14664919 ~ 14671568 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 314658 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 825741 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 905583 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1248086 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 1272968 17137930 ~ 17200630 (+)

Expression


Co-expression Network