G20468


Basic Information

Item Value
gene id G20468
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15878189 ~ 15878426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30492
CCCCAAACTTTTCCATATTTCTTAGCACACTCCATATCGAAATTGCACAAACCCTAAAATAGATTTGCACACAGACAActaatcagagagagagagagagagagattaaaatAGTGAATACTCTTTATATAATTAATGACTCACTTTAGTGTATGAGAGAAGTGTACCAAAGAAAGGCCAAGGCCTTGGTCCTGGGATTCCCAGTTTCTTAAAAAATCCATGCGGCCAAACACCATAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005215 transporter activity molecular_function
GO:0015114 phosphate ion transmembrane transporter activity molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism
ko03320 PPAR signaling pathway
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU30492 True 238 lncRNA 0.38 1 15878189 15878426

Neighbor

gene id symbol gene type direction distance location
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding upstream 31223 15835083 ~ 15846966 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding upstream 49206 15823776 ~ 15828983 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding upstream 54754 15819654 ~ 15823435 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 180815 15639017 ~ 15697374 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding upstream 260125 15608385 ~ 15618064 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding downstream 272427 16150853 ~ 16175090 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 333941 16212367 ~ 16221215 (+)
chst12a chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724 coding downstream 343774 16222200 ~ 16229178 (+)
lfng lfng,LOC107703400,LOC107674646,LOC107758333 coding downstream 414796 16293222 ~ 16301224 (+)
snx8a snx8,LOC107758331,LOC107592787,LOC107674736,LOC107703396 coding downstream 481486 16359912 ~ 16369501 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding upstream 2230 15874033 ~ 15875959 (+)
G20465 NA non-coding upstream 4264 15872802 ~ 15873925 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding upstream 13227 15862013 ~ 15864962 (+)
LOC122334397 NA non-coding upstream 150319 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding upstream 156886 15720247 ~ 15721303 (+)
G20469 NA non-coding downstream 704 15879130 ~ 15879329 (+)
LOC122333245 NA non-coding downstream 1042 15879468 ~ 15880669 (+)
G20647 NA non-coding downstream 414179 16292605 ~ 16292806 (+)
G20656 NA non-coding downstream 429372 16307798 ~ 16308018 (+)
LOC122342129 NA non-coding downstream 717866 16596292 ~ 16597215 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 133995 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 598076 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 693316 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 708931 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1206621 14664919 ~ 14671568 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 301194 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 812277 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 892119 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1234622 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 1259504 17137930 ~ 17200630 (+)

Expression


Co-expression Network