gna12a (gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336)


Basic Information

Item Value
gene id gna12a
gene name gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16179620 ~ 16207846 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30661
GGGGAAACATCAGAAAGTCGCTCGCGCTCCTCCAGAATGAACTTTTGGAACTTACGTCGCTACCAGTATATAAAGGAATACGGTTTCCGGCTAAATAACATCTCCTGAGCTCATTTAGCGCTCGATGTATTTCATTACCACGAACAACGGATTTGTTTAGCGGGCGCCTGCCTTTATTCACTGTTTTAACGTGCAGCAGCGGTCGCTTTACTGGGGAAGGACCTCTTCGGCGTGAACGCTTTTACATACGTCTTTATAATGGGGGGAAatgtttattgtgtttcatCTTTTTCCTTTTAGTATTTGTTTTGACCGGTGAATATTGACAGCAGATGTTTACCGGAGTCTATTCCATGTAGATATCGTATAAAACATAGAGTAAAGTTCTTTGGCACTTTAATGAATACGTCAGGTGGTAACTAACCGCGTTCGAGTTGCAAAGGATGGCCGGCGTGGTGCGCACCCTGAGCCGGTGTCTGCTGCCCGCTGAGGCCGCGCACGATGACAGGAGTAACGCGAAAGCGCCGGACGGCGAGCGCGACGCGAACCAGGAGCGCGAGGCGAAGCGGCGCGAGCGCGAGGCGAAGCGGCGCAGTCGCGAGATCGACGCCATGCTCGCGCGCGAGAGACGCTCGGTGCGGCGCCTGGTGAAGATCCTGCTGCTGGGCGCCGGAGAGAGCGGCAAATCCACCTTCCTCAAACAAATGAGGATCATCCACGGGAAAGAGTTTGACCAGAAAGCGCTGCTCGACTTCAGGGATACCATCTTCGAAAACGTCATCAAGggaatgCGGGTACTGGTGGATGCCCGAGACAAACTTGGTGTTCCCTGGCAGAACTCTGAGAACGAGAAGCATGGCATGTTTGTTATGTCCTTTGAAAACAAAGCAGGCATGCCCGTCGAACCCTGCACCTTTCAGCTGTACGTCCCAGCCCTGCAGACTCTCTGGAGTGATAGTGGCATCCAGGATGCCTACGGCCGACGGAGTGAATTTCAGCTGagtgAATCAGTGAAATATTTCCTGGACAACTTGGATAGGATTGGACAAGCGaattatgtac
>XM_043234675.1
CATTTACCATCTCAGGCATCCTTATTTGCCACTGATCCGACTCTGCCAGTTGTTTGCTTCATACCTTTTTCTCGCGCCTTTTGCCAGGTTCCCTGTAAAGTCTTAATACTTCCACAGAGACGGCGGTGCATGACAGACAGCAAGGGGCCACTGTAAGACTGACATTTCTGACACCGGCCGCAATCCCCCTCATGTCAGTATAAACGCCCATCTCGCTCGGCCCCCTACCGGCCACCGGCCCAACAGCAGGAGGGGCTTCAGTCCAGCCAACAAACTTCCCAGAGAGCAGCGGGGAAACATCAGAAAGTCGCTCGCGCTCCTCCAGAATGAACTTTTGGAACTTACGTCGCTACCAGTATATAAAGGAATACGGTTTCCGGCTAAATAACATCTCCTGAGCTCATTTAGCGCTCGATGTATTTCATTACCACGAACAACGGATTTGTTTAGCGGGCGCCTGCCTTTATTCACTGTTTTAACGTGCAGCAGCGGTCGCTTTACTGGGGAAGGACCTCTTCGGCGTGAACGCTTTTACATACGTCTTTATAATGGGGGGAAatgtttattgtgtttcatCTTTTTCCTTTTAGTATTTGTTTTGACCGGTGAATATTGACAGCAGATGTTTACCGGAGTCTATTCCATGTAGATATCGTATAAAACATAGAGTAAAGTTCTTTGGCACTTTAATGAATACGTCAGGTGGTAACTAACCGCGTTCGAGTTGCAAAGGATGGCCGGCGTGGTGCGCACCCTGAGCCGGTGTCTGCTGCCCGCTGAGGCCGCGCACGATGACAGGAGTAACGCGAAAGCGCCGGACGGCGAGCGCGACGCGAACCAGGAGCGCGAGGCGAAGCGGCGCGAGCGCGAGGCGAAGCGGCGCAGTCGCGAGATCGACGCCATGCTCGCGCGCGAGAGACGCTCGGTGCGGCGCCTGGTGAAGATCCTGCTGCTGGGCGCCGGAGAGAGCGGCAAATCCACCTTCCTCAAACAAATGAGGATCATCCACGGGAAAGAGTTTGACCAGAAAGCGCTGCTCGACTTCAGGGATACCATCTTCGAAAACGTCATCAAGggaatgCGGGTACTGGTGGATGCCCGAGACAAACTTGGTGTTCCCTGGCAGAACTCTGAGAACGAGAAGCATGGCATGTTTGTTATGTCCTTTGAAAACAAAGCAGGCATGCCCGTCGAACCCTGCACCTTTCAGCTGTACGTCCCAGCCCTGCAGACTCTCTGGAGTGATAGTGGCATCCAGGATGCCTACGGCCGACGGAGTGAATTTCAGCTGagtgAATCAGTGAAATATTTCCTGGACAACTTGGATAGGATTGGACAAGCGaatGTGGCCAGGAAGGCTGGAGCCATTAAGAAGATCCCTTTTAAGATGGTAGATGTGGGTGGCCAGCGCTCCCAGAGACAGAAATGGTTTCAGTGCTTCGACGGCATCACCTCCATCCTCTTCATGGTGTCCTCCAGCGAATTCGACCAGGTGCTGATGGAAGACCGCCGCACCAACCGCCTGGTGGAGTCCATGAACATCTTTGAAACCATAGTCAACAACAAGCTCTTTTCTAATGTGTCCATAATCCTCTTCCTCAACAAGATGGACCTTCTGGTGGAGAAGGTACGCAAAGTCAGCATTAGCAAACACTTTTCAGACTTCCGGGGGGACCCTCACCGACTGGAGGACGTGAAGGCCTATCTTGTTCAATGCTTCAACCGCAAGCGGCGCAACCGCAGCAAGCCGCTTTTCCACCACTTCACCACTGCCATTGACACTGAGAACATCCGCTTCGTCTTTCATGCCGTCAAAGACACAATTCTTCAGGAGAACCTTAAAGATATAATGTTGCAGTGACCTTTACAGGAACTTTTGATCCATTCTGCCGTTGTTTAAGTCTGTTTCCTATGCTATTGCAGGAAAAAATGCCTTACGGATTTAATTTGAACCCATTTTGCCTTGACAGCTGTGCAGGAGAAACCCCAATACCACGTACCCCAATATCCAGTCTTTAATATTTGAGGCATGGCGTGTGAAAATGACATGAACCTCTCTTGTGAATCtcaatcatttaaatgtgttcctgtgaaacaggaagtgtgAAGACACCTTGGGTGGTAGAAAAGCCAAGAACAGTAGGGGGTATTACAGTTCGTCACTGCAAAGAAAACGAAGCAAACCGATAACTGATCGTTATTGAGAATTTTCACCTCTTTCCTCGAAGATAATCTCAATGCACAATAACTTTTACACTGGCTCATCTCACAAATAAcatcctaaaaataaatagcaaaccTGCACTGAACATCCTTCTTGATCAAGTAgttaatttcatttcacttgacaggtttattttttatttaatctaacattttaaatcacgTTTTGCTTTATCTATACTTGTGAGTTTATAGATGACATGCAAAATTCTCATTAACAACTAAGCAGGGTTTTTGTACATAGAGTGAATAGCAGCTTTTGTACATGTTAACTGTCTCTTCTGCTTTTATGTGTCTCTTCACGTTAAGCTACAAGCTTTGAAGTATAGAGTAGGGTCAAATCACTGGTTATGCCTAACACCACTAACTTAATGCATTaatggtatttttaaaatgtcattattgcACAGCATATGTACTTTATTCTGAGTATTCGAATGATGTTAATCCTCTCGAAATGTATTTAACCTGTGTAGTTTTCGACTTCACGAGGAGATTACAGCGGGAGTCGTTCCGATGCTGTTCGGGGACTTGAGTTTTATTCTCTGGATCTTGATGAATGTCATCTGTGAACGTCTGTGGGGTTTTAGCTGGAGTTGCGATCcctgttttattcttttgaactaCTTCATGAACGGGGCGTGAAGTGACTTCCTGTGTGGGAGGTGGCACAGGTTGATCCATTTTCCAGAGATCCGGTTTTGGCAATCAGAAGTAATCGCTGACTCAAGGTCATTTTTCGATTTCGGTGCAGGTGTCCGCTTGTCAGAATTTAGTTTTTGCCATTGTTTTGTGTTAAGGGAAAGCTTGAGATACGCTATCAAATAGTTTTCAAGTTTTAACAAGAGCATCAAGCCCTCTTCTTACACGTCTTTAATGTCTGTGGATTAGAATGGAAACTGTGACTCATATCTTGCAAAACAACACTGACAATGTCTCTCTGTGCGCTAAAGGTATTTAAATGGTGTCCTTCCTCATAATCACCGCAGTGCCACGTTGGCCTACTGAAAGTTGGCAGGAAGGGATTTGATTTGAGATATCGGACACACCCTAAACCTTTGTCCCTGACAGCTCTTCCCAGTTGgagaaaaacacatgcatttactGGAAGATCTCTGGCTCCTCTTGTGCACATAAGAAGCCGAATGGACTCTTTCATTTAAGGCTGTGTTTGCCCCTGCTTCCTCTTTTAAGACCATAAATCCATTGGGAGAGTTTGAAAGTTAAATAGCGGaaaagaaacacagacacagttTGAAGGTTGTTAAAAACCGCAATCAAGATAAGCATATGGCGTGTAGTTAatttgatataaattatatttggagaataataaaataaacgatTTCAATCTACTGATGGTGATTTACAGTACTTACGTTACATTTGCTGCTCTGGTGTTTTGTCCCTTTTAGGATCTTGTGAGTGTCACTATTAACAGGACGTCTACTTCAACACTCTGTCAGTGTTTTACTGTAGATTTTTCAAATTTCAAGTTTTGCTTCCCTAAAGTTTTATGTATCCAGTGATTGTAAAAAGTGTGAAATTCCAGATTTTAACTTCATTACGTGTGTTTTGTATATAAGACctgtataaatacaataaaatgttgaGTTATA

Function

symbol description
gna12a Predicted to enable D5 dopamine receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within several processes, including gastrulation; glial cell development; and negative regulation of cell-cell adhesion mediated by cadherin. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in brush border membrane. Is expressed in brain; gill; head; and olfactory epithelium. Orthologous to human GNA12 (G protein subunit alpha 12).
gna12 Predicted to enable D5 dopamine receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Involved in regulation of TOR signaling and regulation of proteasomal ubiquitin-dependent protein catabolic process. Located in focal adhesion.

NR:

description
guanine nucleotide-binding protein subunit alpha-12-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0009826 unidimensional cell growth biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:2000048 negative regulation of cell-cell adhesion mediated by cadherin biological_process
GO:0043149 stress fiber assembly biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0031526 brush border membrane cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0031752 D5 dopamine receptor binding molecular_function

KEGG:

id description
K04346 GNA12; guanine nucleotide-binding protein subunit alpha-12

RNA

RNA id representative length rna type GC content exon number start site end site
TU30661 False 1062 TUCP 0.52 4 16179910 16205168
XM_043234675.1 True 3842 mRNA 0.45 5 16179620 16207846

Neighbor

gene id symbol gene type direction distance location
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding upstream 4530 16150853 ~ 16175090 (+)
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding upstream 332654 15835083 ~ 15846966 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding upstream 350637 15823776 ~ 15828983 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding upstream 356185 15819654 ~ 15823435 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 482246 15639017 ~ 15697374 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 4521 16212367 ~ 16221215 (+)
chst12a chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724 coding downstream 14354 16222200 ~ 16229178 (+)
lfng lfng,LOC107703400,LOC107674646,LOC107758333 coding downstream 85376 16293222 ~ 16301224 (+)
snx8a snx8,LOC107758331,LOC107592787,LOC107674736,LOC107703396 coding downstream 152066 16359912 ~ 16369501 (+)
mrm2 mrm2,ftsj2,LOC107703397,LOC107674604 coding downstream 164923 16372769 ~ 16375491 (+)
LOC122333245 NA non-coding upstream 298951 15879468 ~ 15880669 (+)
G20469 NA non-coding upstream 300291 15879130 ~ 15879329 (+)
G20468 NA non-coding upstream 301194 15878189 ~ 15878426 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding upstream 303661 15874033 ~ 15875959 (+)
G20465 NA non-coding upstream 305695 15872802 ~ 15873925 (+)
G20647 NA non-coding downstream 84759 16292605 ~ 16292806 (+)
G20656 NA non-coding downstream 99952 16307798 ~ 16308018 (+)
LOC122342129 NA non-coding downstream 388446 16596292 ~ 16597215 (+)
G20744 NA non-coding downstream 578986 16786832 ~ 16787050 (+)
G20798 NA non-coding downstream 781366 16989212 ~ 17052645 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 435426 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 899507 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 994747 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 1010362 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1508052 14664919 ~ 14671568 (+)
LOC122331507 psmg3,LOC107703392 other downstream 482857 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 562699 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 905202 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 930084 17137930 ~ 17200630 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other downstream 1511336 17719182 ~ 17723423 (+)

Expression


Co-expression Network