LOC122341878


Basic Information

Item Value
gene id LOC122341878
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16874664 ~ 16876081 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30872
gtttaaaaacaaatcaccaCGATATAGATCTGAAGTATTAGATTTAATGCGACGTGTGACACTGTGAgttgtagtttatttatttttttaaaataagaatattatttcaatataaaaagtaggcctatttctgaaaaaaaagaagaaaagaaatcgATCACATACAAAACAGTAATGTTTAAGTTTACAGTGAATAATAAACGCTCAGTCGGGTGCTAGTCTTGCAAATGTAGATGATTGTCTCCAGTCCCCGGTGATGGAAAGATAATGCATCGCACCAGAGGCGGACTGGGACACCTGTCAGCATCCTGACAGCACGGAGAAGAGGCGTTAGTCAAATGGACTCTGATCGCTGCTGACCTGTTTGTTCTGACGCTTCCTGTAACAAAAGAGAAGGTACAGGCAAAAGACGTTCAATGAGGACGAGGTTAAAAGATCTTTTTGGTTTTCTTGAGAGCAGCTCTGATCGTTAGGATGAGTTCAATGAGTTCTGGCTTCTTTAATGAAAGTATAGGAAACGTCCCGTGCCATATATTAGGCTTTGCCTGGGTACTTTCACCACAAGGTGGCGGTaatgctgtttctttttctgtttgagTGAACCTCACTAAATTATATGTAATGCTTTTTCTAATACGTGTATTtgtcattacaaataaatgatatgGGTTCGGTTTATGATGTAGAAAGGGTAAATATTAGGCTCTGTGTTCTTTTGAGTGAATTACCTCTGTATTCATGAACAGAGATTTGCCTTTTTGTTGTATGTCTGCAACGATACGAAGTTTTACCAAGTTAAATGCCTTTCGATAAAATATCCcgttaataatttataatgaaacAGTAATTATAAAGCTAACCATAACGTAAACCAACAAAACAGCACCAGCTGAGAAAGGCAAGATACAGTCgggattatttatttgaaagattttACTTTGTGGTAAATTTATTAGCCTAATTATCTAATCTAATAGATAACTATTAATCATAagtaactgcatc
>XR_006250496.1
CGGTTTAAGCGTTCCTTGTCGTTTCTGGCCGCAGGCCGCTTCTGTCACGCCTGACGAGTCACGCTCTGGTGACGTAATCACGCCATTGCTGGAGATTTCCAGAAAATACCACCAGAGGCCGTGattcatcagttttttttccagtttaaaaacaaatcaccaCGATATAGATCTGAAGTATTAGATTTAATGCGACGTGTGACACTGTGAgttgtagtttatttatttttttaaaataagaatattatttcaatataaaaagtaggcctatttctgaaaaaaaagaagaaaagaaatcgATCACATACAAAACAGTAATGTTTAAGTTTACAGTGAATAATAAACGCTCAGTCGGGTGCTAGTCTTGCAAATGTAGATGATTGTCTCCAGTCCCCGGTGATGGAAAGATAATGCATCGCACCAGAGGCGGACTGGGACACCTGTCAGCATCCTGACAGCACGGAGAAGAGGCGTTAGTCAAATGGACTCTGATCGCTGCTGACCTGTTTGTTCTGACGCTTCCTGTAACAAAAGAGAAGGTACAGGCAAAAGACGTTCAATGAGGACGAGGTTAAAAGATCTTTTTGGTTTTCTTGAGAGCAGCTCTGATCGTTAGGATGAGTTCAATGAGTTCTGGCTTCTTTAATGAAAGTATAGGAAACGTCCCGTGCCATATATTAGGCTTTGCCTGGGTACTTTCACCACAAGGTGGCGGTaatgctgtttctttttctgtttgagTGAACCTCACTAAATTATATGTAATGCTTTTTCTAATACGTGTATTtgtcattacaaataaatgatatgGGTTCGGTTTATGATGTAGAAAGGGTAAATATTAGGCTCTGTGTTCTTTTGAGTGAATTACCTCTGTATTCATGAACAGAGATTTGCCTTTTTGTTGTATGTCTGCAACGATACGAAGTTTTACCAAGTTAAATGCCTTTCGATAAAATATCCcgttaataatttataatgaaacAGTAATTATAAAGCTAACCATAACGTAAACCAACAAAACAGCACCAGCTGAGAAAGGCAAGATACAGTCgggattatttatttgaaagattttACTTTGTGGTAAATTTATTAGCCTAATTATCTAATCTAATAGATAACTATTAATCATAagtaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30872 False 1005 lncRNA 0.36 3 16874664 16875938
XR_006250496.1 True 1142 lncRNA 0.38 3 16874670 16876081

Neighbor

gene id symbol gene type direction distance location
elfn1a elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding downstream 245508 16542348 ~ 16629156 (-)
LOC122341848 LOC101886504,LOC101886427 coding downstream 423621 16449554 ~ 16451043 (-)
nudt1 nudt1,LOC107703398,LOC107592807,LOC107758325,LOC107674605 coding downstream 502225 16368873 ~ 16372439 (-)
ttyh3a ttyh3a,LOC107581706,LOC107591862,LOC107703399 coding downstream 517132 16308421 ~ 16357532 (-)
grifin grifin,LOC107758328,LOC107592780,LOC107592523 coding downstream 629261 16243653 ~ 16245403 (-)
axin1 axin1,LOC107727128,LOC107703383,LOC107745589,LOC107674664 coding upstream 81881 16957962 ~ 16998780 (-)
pla2g10 zgc:92162,LOC107727130,LOC107703381,LOC107745603,LOC107674667,LOC107564700,LOC107568924 coding upstream 144343 17020424 ~ 17023995 (-)
rmi2 rmi2,LOC107674720,LOC107703341 coding upstream 169019 17045100 ~ 17047481 (-)
mslna LOC107703339,LOC107727132 coding upstream 172834 17048915 ~ 17060502 (-)
LOC122341315 NA coding upstream 184061 17060142 ~ 17077420 (-)
G20753 NA non-coding downstream 89456 16784990 ~ 16785208 (-)
G20752 NA non-coding downstream 90839 16783204 ~ 16783825 (-)
G20717 NA non-coding downstream 175242 16691165 ~ 16699422 (-)
G20645 NA non-coding downstream 602140 16272279 ~ 16272524 (-)
G20643 NA non-coding downstream 604756 16269684 ~ 16269908 (-)
G20781 NA non-coding upstream 69673 16945754 ~ 16946203 (-)
G20854 NA non-coding upstream 183410 17059491 ~ 17070363 (-)
G20877 NA non-coding upstream 282315 17158396 ~ 17198716 (-)
G20895 NA non-coding upstream 581925 17458006 ~ 17458330 (-)
LOC122342167 NA non-coding upstream 623857 17499938 ~ 17501443 (-)
uncx uncx,LOC107703385,LOC107674712,LOC107568937,LOC107745590 other downstream 677 16862725 ~ 16873987 (-)
mafk mafk,LOC107703391,LOC107674662 other downstream 144975 16715721 ~ 16729689 (-)
LOC122341847 NA other downstream 419185 16453074 ~ 16455479 (-)
G20680 LOC101886504,LOC101886427 other downstream 422864 16451140 ~ 16451800 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other downstream 1274316 15598770 ~ 15600348 (-)
snn snn,LOC107564698,LOC107703342 other upstream 163106 17039187 ~ 17042414 (-)
h3f3a h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other upstream 787424 17663505 ~ 17691250 (-)
LOC122340174 LOC107710648,LOC107674639,LOC107565762 other upstream 830652 17706733 ~ 17718609 (-)
G21010 NA other upstream 1044867 17920948 ~ 17921707 (-)
LOC122333861 eci1,LOC107568619,LOC107690250,LOC107733832,LOC107590612,LOC107685938 other upstream 1159429 18035510 ~ 18044587 (-)

Expression


Co-expression Network