snn (snn,LOC107564698,LOC107703342)



Basic Information


Item Value
gene id snn
gene name snn,LOC107564698,LOC107703342
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17039187 ~ 17042414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU30968
TGACAagctctatttatttatttatttattcatctgccCAGGCTGGAAATGTACGCGACTGGTTTCGGATGTTGCCGTGTATAACGGAGACGGAGACGGAGACGGACGGGAGTTGATGCGGCTGTCAGATCTCTCCAGTGCACGAAATGGTTCGCGAAAGCTACACGAGCGTCGTTCTTTGATTAAAAGGCGGCCTAGTTTTGATGTAGCCCAAGCCTGCAAGAGCTGTGCAGAACTGCCTCTCCAGGACGTTTGAAGGCCTGTTGTTGAATCTGTCCTGCCTGATAGGATGTCTATCACGGACCACAGCCCCACCACCGGGGTCGTCACTATTATTGTGATACTGATTGCCGTCGCTGCGCTGGGGGCTTTAATTCTGGGTTGCTGGTGCTACTTGCGGCTGCAGCGCATCAGTCAGTCTGAAGACGAGGAGAGCATCGTGGGTGAAGGTGAAACCAAGGAGCCCTTCTTGCTGGTCCAGTATTCGGCCAAAGGCCCGCGGGTGGAGCACAAGACCAAGCTCACCCCTAACGGTCCCGAGAGCCAGACCTAAGTCCTACCGTCTCCCCTCGCAATGTATACGGTGTCGTTTTTGCGGTCTAAAAGAATCTCGAACCTCGCTGTGTCGCCCCGCACCAACGTGAAACCACAAGCTGATGAACGGAGACCAACCTAGTGCATGCGGTTGTCTAGTTGCTTTgacttgattttatttatttttttcctcgcCCGTTTTGTGGTGGTACAGAGCCCTGTCATAATGTGAAATCGACGATCGTCAGCGTTTTGTGCcattctgtttgtttgtaaagCCGTAAACGAGTTCCTAGGCTAAATCAAGATGAAGCTGATTTCTTTGGTGGcgtttttactttattgttcGTCCAGAGCTGGCTCTGGGATTAAGAAATTCAACACGCATTGTAATGGACTTTAGATCCATGTTAAAGTTTTATCCTGTTtctttaatcttaaaaataaaggcctCTGTTGGCATCTGTGGTTCCGTagagaacctttaacatccattttACAAAAAGTTCTTTTAAGAATTGTTCATTGATATTGGCTCTTTTATGGCATTGCTGTGAAAACTCcctttttgaactttttttttgtttttaagtgttgAATTGCAAtacaacagaaatgttttttcattacaaataaGCACTTCAGGATACCATAACTTGCCAAATGATGTACACTGGCTTTTGAAAGCTCTTACATTACATTTAGACATGTTCAGAATCATGGTTAGCACTTTTTATCCGTAATGTGACACACAAGTGATTTTTGTAAACAGCGTTTGCTGGTTCTGGTTTAAACCTGCTAGGAAACCACTATAAGAAAGAAAGCCGATGACCGAGGTGATTACTGTGATCCCTGAGGCGTTCGTTTTTTGTGGTTGAGCACATTTCTACGCCGCGAGAAGTCATTTGaaagtgtaaatattatttttataggtGGCTTAATGCATAACTGGATACTGAAAAGTCATTGTCTTGAGTTTTTAACCCGTTCCTTCTCAGTATTATTTTTGGTTCaattaattctgtttttgtgATATCGCACTGTTTGCTGTTTGTACATGTAAGATGAAAGTgagagaaattatttatttttatacagtattcATGCAAATGTTGTCTATTGAGGCAAAATCAACAGTCAGGCGTATAGAGAGGTAGATGAAGCCTGAAAATGCAGCTGAAATGATTTCTTTGGTGTTGCTGAAGTTTTCGGGTTCTGTCTCGCATTTGAAAtcggcagatttttttttgtgtgtgtgtgcattatgtGCTGTTCAATATACAGAAAGGACGGTACACGCATGTTAATTTAATGTGCATATTTGAGAAAAGCAACTTTTTCTTAGTAAAGCGCTCGGTATACTGCTTTTGTCACTCCAGCCAGTGTGTCTGTCCAGTGTTTGACTAAACTGAACAATAAAACTTCTGTGACTAGGA
>XM_043235207.1
TGGACAAAACGCCATCGCTTTTAGGCTGCTTGATTggatatttgctttttttcaggCGTGATCTCATTTCCTGTACAGTGACAagctctatttatttatttatttattcatctgccCAGGCTGGAAATGTACGCGACTGGTTTCGGATGTTGCCGTGTATAACGGAGACGGAGACGGAGACGGACGGGAGTTGATGCGGCTGTCAGATCTCTCCAGTGCACGAAATGGTTCGCGAAAGCTACACGAGCGTCGTTCTTTGATTAAAAGGCGGCCTAGTTTTGATGTAGCCCAAGCCTGCAAGAGCTGTGCAGAACTGCCTCTCCAGGACGTTTGAAGGCCTGTTGTTGAATCTGTCCTGCCTGATAGGATGTCTATCACGGACCACAGCCCCACCACCGGGGTCGTCACTATTATTGTGATACTGATTGCCGTCGCTGCGCTGGGGGCTTTAATTCTGGGTTGCTGGTGCTACTTGCGGCTGCAGCGCATCAGTCAGTCTGAAGACGAGGAGAGCATCGTGGGTGAAGGTGAAACCAAGGAGCCCTTCTTGCTGGTCCAGTATTCGGCCAAAGGCCCGCGGGTGGAGCACAAGACCAAGCTCACCCCTAACGGTCCCGAGAGCCAGACCTAAGTCCTACCGTCTCCCCTCGCAATGTATACGGTGTCGTTTTTGCGGTCTAAAAGAATCTCGAACCTCGCTGTGTCGCCCCGCACCAACGTGAAACCACAAGCTGATGAACGGAGACCAACCTAGTGCATGCGGTTGTCTAGTTGCTTTgacttgattttatttatttttttcctcgcCCGTTTTGTGGTGGTACAGAGCCCTGTCATAATGTGAAATCGACGATCGTCAGCGTTTTGTGCcattctgtttgtttgtaaagCCGTAAACGAGTTCCTAGGCTAAATCAAGATGAAGCTGATTTCTTTGGTGGcgtttttactttattgttcGTCCAGAGCTGGCTCTGGGATTAAGAAATTCAACACGCATTGTAATGGACTTTAGATCCATGTTAAAGTTTTATCCTGTTtctttaatcttaaaaataaaggcctCTGTTGGCATCTGTGGTTCCGTagagaacctttaacatccattttACAAAAAGTTCTTTTAAGAATTGTTCATTGATATTGGCTCTTTTATGGCATTGCTGTGAAAACTCcctttttgaactttttttttgtttttaagtgttgAATTGCAAtacaacagaaatgttttttcattacaaataaGCACTTCAGGATACCATAACTTGCCAAATGATGTACACTGGCTTTTGAAAGCTCTTACATTACATTTAGACATGTTCAGAATCATGGTTAGCACTTTTTATCCGTAATGTGACACACAAGTGATTTTTGTAAACAGCGTTTGCTGGTTCTGGTTTAAACCTGCTAGGAAACCACTATAAGAAAGAAAGCCGATGACCGAGGTGATTACTGTGATCCCTGAGGCGTTCGTTTTTTGTGGTTGAGCACATTTCTACGCCGCGAGAAGTCATTTGaaagtgtaaatattatttttataggtGGCTTAATGCATAACTGGATACTGAAAAGTCATTGTCTTGAGTTTTTAACCCGTTCCTTCTCAGTATTATTTTTGGTTCaattaattctgtttttgtgATATCGCACTGTTTGCTGTTTGTACATGTAAGATGAAAGTgagagaaattatttatttttatacagtattcATGCAAATGTTGTCTATTGAGGCAAAATCAACAGTCAGGCGTATAGAGAGGTAGATGAAGCCTGAAAATGCAGCTGAAATGATTTCTTTGGTGTTGCTGAAGTTTTCGGGTTCTGTCTCGCATTTGAAAtcggcagatttttttttgtgtgtgtgtgcattatgtGCTGTTCAATATACAGAAAGGACGGTACACGCATGTTAATTTAATGTGCATATTTGAGAAAAGCAACTTTTTCTTAGTAAAGCGCTCGGTATACTGCTTTTGTCACTCCAGCCAGTGTGTCTGTCCAGTGTTTGACTAAACTGAACAATAAAACTTCTGTGACTAGGAAAA

Function


symbol description
snn Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Orthologous to human SNN (stannin).

NR:

description
PREDICTED: stannin-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU30968 False 1970 TUCP 0.42 2 17039190 17042336
XM_043235207.1 True 2051 mRNA 0.42 2 17039187 17042414

Neighbor


gene id symbol gene type direction distance location
pla2g10 zgc:92162,LOC107727130,LOC107703381,LOC107745603,LOC107674667,LOC107564700,LOC107568924 coding downstream 15192 17020424 ~ 17023995 (-)
axin1 axin1,LOC107727128,LOC107703383,LOC107745589,LOC107674664 coding downstream 40407 16957962 ~ 16998780 (-)
elfn1a elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding downstream 410031 16542348 ~ 16629156 (-)
LOC122341848 LOC101886504,LOC101886427 coding downstream 588144 16449554 ~ 16451043 (-)
nudt1 nudt1,LOC107703398,LOC107592807,LOC107758325,LOC107674605 coding downstream 666748 16368873 ~ 16372439 (-)
rmi2 rmi2,LOC107674720,LOC107703341 coding upstream 2686 17045100 ~ 17047481 (-)
mslna LOC107703339,LOC107727132 coding upstream 6501 17048915 ~ 17060502 (-)
LOC122341315 NA coding upstream 17728 17060142 ~ 17077420 (-)
ubfd1 ubfd1,LOC107564687,LOC107745602,LOC107674700,LOC107703338,LOC107727120 coding upstream 40865 17083279 ~ 17089129 (-)
LOC122341808 LOC107727118 coding upstream 62974 17105388 ~ 17109815 (-)
G20781 NA non-coding downstream 92984 16945754 ~ 16946203 (-)
LOC122341878 NA non-coding downstream 163106 16874664 ~ 16876081 (-)
G20753 NA non-coding downstream 253979 16784990 ~ 16785208 (-)
G20752 NA non-coding downstream 255362 16783204 ~ 16783825 (-)
G20717 NA non-coding downstream 339765 16691165 ~ 16699422 (-)
G20854 NA non-coding upstream 17077 17059491 ~ 17070363 (-)
G20877 NA non-coding upstream 115982 17158396 ~ 17198716 (-)
G20895 NA non-coding upstream 415592 17458006 ~ 17458330 (-)
LOC122342167 NA non-coding upstream 457524 17499938 ~ 17501443 (-)
G20933 NA non-coding upstream 527154 17569568 ~ 17570455 (-)
uncx uncx,LOC107703385,LOC107674712,LOC107568937,LOC107745590 other downstream 165200 16862725 ~ 16873987 (-)
mafk mafk,LOC107703391,LOC107674662 other downstream 309498 16715721 ~ 16729689 (-)
LOC122341847 NA other downstream 583708 16453074 ~ 16455479 (-)
G20680 LOC101886504,LOC101886427 other downstream 587387 16451140 ~ 16451800 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other downstream 1438839 15598770 ~ 15600348 (-)
h3f3a h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other upstream 621091 17663505 ~ 17691250 (-)
LOC122340174 LOC107710648,LOC107674639,LOC107565762 other upstream 664319 17706733 ~ 17718609 (-)
G21010 NA other upstream 878534 17920948 ~ 17921707 (-)
LOC122333861 eci1,LOC107568619,LOC107690250,LOC107733832,LOC107590612,LOC107685938 other upstream 993096 18035510 ~ 18044587 (-)
dexi dexi,LOC107590611,LOC107567922,LOC107733843,LOC107736577,LOC107685935,LOC107690264 other upstream 1399451 18441865 ~ 18443213 (-)

Expression



Co-expression Network