h3f3a (h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377)


Basic Information

Item Value
gene id h3f3a
gene name h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17663505 ~ 17691250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU31151
CGAGAGACATTAAGTGGGAGAGATCGTGGTTCAACGAGAGACTGATAAACAATGGCTCGTACCAAGCAGACCGCGCGTAAATCAACTGGAGGAAAGGCGCCAAGAAAACAGCTGGCGACTAAAGCCGCTAGGAAGAGCGCGCCCTCTACTGGTGGAGTCAAGAAGCCCCACAGATACAGACCTGGAACTGTTGCTCTGAGAGAGATCCGTCGTTATCAGAAGTCAACGGAGTTGCTCATCCGCAAGTTGCCATTTCAGCGTCTGGTTCGAGAGATCGCACAGGACTTCAAAACTGATCTGAGGTTCCAGAGTGCAGCCATTGGTGCACTTCAggAAGCAAGTGAAGCCTACCTTGTCGGTTTGTTTGAGGACACTAACTTGTGTGCCATCCATGCCAAGAGAGTCACAATCATGCCCAAGGATATCCAGCTTGCAAGGCGAATCAGAGGAGAGAGGGcataatttttagtttgtttttttgtttttgttttttattttaacttttaatgagAAACACTCAAAGTAAAAGCAATGGATTTGTACATTGGAGTCATTTTGTAAAGCATTCCTTACAGACTCAGGTTTTTAAAGTGAGTGTCTAGATTTAACCATTGTAGAGCTCATTGTAAAGCGGCTTTAGTTGCATGCTTTAAAGTATTTATCACTTATCTTTTACATTGATCATTgggttgtaaataaaattactctACCTCAAAACAGTGTGCTTGTTCAGTCTCTCACTTCAGTTTGCTCTGGCTCAGGTTTTTA
>TU31152
CGAGAGACATTAAGTGGGAGAGATCGTGGTTCAACGAGAGACTGATAAACAATGGCTCGTACCAAGCAGACCGCGCGTAAATCAACTGGAGGAAAGGCGCCAAGAAAACAGCTGGCGACTAAAGCCGCTAGGAAGAGCGCGCCCTCTACTGGTGGAGTCAAGAAGCCCCACAGATACAGACCTGGAACTGTTGCTCTGAGAGAGATCCGTCGTTATCAGAAGTCAACGGAGTTGCTCATCCGCAAGTTGCCATTTCAGCGTCTGGTTCGAGAGATCGCACAGGACTTCAAAACTGATCTGAGGTTCCAGAGTGCAGCCATTGGTGCACTTCAggAAGCAAGTGAAGCCTACCTTGTCGGTTTGTTTGAGGACACTAACTTGTGTGCCATCCATGCCAAGAGAGTCACAATCATGCCCAAGGATATCCAGCTTGCAAGGCGAATCAGAGGAGAGAGGGcataatttttagtttgtttttttgtttttgttttttattttaacttttaatgagAAACACTCAAAGTAAAAGCAATGGATTTGTACATTGGAGTCATTTTGTAAAGCATTCCTTACAGACTCAGGTTTTTAAAGTGAGTGTCTAGATTTAACCATTGTAGAGCTCATTGTAAAGCGGCTTTAGTTGCATGCTTTAAAGTATTTATCACTTATCTTTTACATTGATCATTgggttgtaaataaaattactctACCTCAAAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagcaatataTTAATAGATTGGTTTAGTTTAAAGGCATTCATTTACAAGATCAGGGGTGTCAAATCCTGTTCCAGAATGGTTCTCtttcctgcaaagtttagctcccACTCCCTTCTCGGGGAGGTTCAAATGATCCTCGAGATCTTGATTTTCTgcatcaggtgtgtttaattaagtctagagctaaactctgctgaAAGGTGAATCTCCATAAGCTGGGCTCCACACCTTTGGTGACACCCCTTGACACCAAGATTATGAATAGTTCACAAAAATGACTGTTATGAACAGTAATTGCATGACTTGTCCTTTTAAGCAACAGATCTGATAGCATTAGGCTTTCCTCTGCCCCCACCAGCTCTGGAGTTACCAAAGCAGGTATTAAAAGCAGTTGTAACAATCAATATTCTATGTAATACTGTTAAAAAGTAAGGTACATTTGCAGGATTGTGCTAACTTTCTCAAATTGCAAGACATAGCTATAGCTACCCATGTTATTTTACACATGGTGGCCGTTATAGCCATTGATATGTCCTGACAATGAGAGTATATATAAATTTtcaatttatataatatctCAATGGCTTTGCGAAAACTTTCTTGATGTTGTTTTATACCATAGTCCAGGAGAGTCCCAATCCTGGAGAGATTTGCCCCAAAATTGATTATAACTCATCCTCCTGTACCTTTCTTGTAACACTTAGACCTTGATTAGCTTTATCAGGTGTATTTGATTGGGTTGGAGCTGAAGCCTGCAAAGCTGTGGCTATCCAGGACCAACACTGACCACCCTTGTCTAACATCATCAGTGAAGAAAACTGAAACAGTGCATAAACAATGCAGGCATTGCATTACCATTAGATTGGAAGCACTTCTGAAACACCATTATTTCCACTTCATTGCAtcttaaagacaaaataaaactcAGCACAATGGGCCTCATTTATTAAACGAATGTAAGACAAAAAAGTGGGCGTACAGTCATTTCTACGCAAAACATGAGTGGTGACTACAATCAATCTGCTGGAGGTTTTGTAGGTTACTGATTTTTTATCCCAGTTACCACGTGCCATTGAGGTTCACgttataccaaaaaaaaaaaaaaaaaaaaaaaaaaggagcagcATTATAtgtcaacaaacatttctttccATAACAATAGGTTCCACCTCTACAGCTCAGCACCTTGGCTCCTTGGGCGGTGACAATACACGTGCTGTGACCAAAGGATGGTATAATTCAGCTCTGAAACTGTGGGGAGTGCAGATTTATGGCATGAGATGTGATGTGTCAAGGGTGCAGTGGATGCACAGTGTGAGGTTTGAGTTCAGGCTGAGGTCACAGCGCGGGCACACAGAGAGCGTTGCTCTGCAGTCCACTCATTAAAACATAACACTCACTCTCACATAACGACATACCACTCTTCCTCAACACAATGGCAACACTAGCCTCACTTTTGTATTTGCCTACAATGACACAAATGctacattattgttttatttaactcaaCTGGCTTTAtagatcttttttatttatttaaaaacaccacaaaggaaagctaaagaagaaaaaaaattggctACCTTGAGCAACCGCTCTTTTTATATGTGATCAGCATTTGTGCTAATCAAAATTGtttgtacttatatttatttgggATATTCCTAATCATAGTACACATGCAATTTATCATCTGAAATTACCACTACTACATTTGAAgtagcattttttaaacacaatttaagacatttttggatgaaaactgggaggcttgtgactgtcccattgactgcaatgtaatgaacactgtcaagatCCATAAAAGACAGTCAGAATAGTCCATGTGCCAGAAGCTTCAATCTGATTTTTATGAAGCAATGAAAATACTTTtgcatgcaaagaaaataaaaatcatgactttattcaacaatcgGCATCATAGCGTTACCATAGCCCCATTTTGGAAAGTATCCATTGaattcaaactaaaaaaagactGCGTACAAAAAGTACTGTTGTCACTTCATGACCTACATtttgatgatgtctttcatacttgaCAGTCAAAAGCCTCCCAGTATTCAtccaaaatgtcttaaattttGTTCTAAAAGATAAACAGAACTTTCAAGggattggaacaacatgggggtaagtgattaatgacacagttttcattttagtctgGATTAACactttaacaataattaaatgtaattatttacatgaCAATTATCAGCCAAACATgcaaattttacttaaaattattagtgaaaaaaaaaaaacaataataagctttttaagtgttcaaatcTCCAGAAGTCACACAGctatttaacaaacaaacacatatacacacatacatacatttatatat
>XM_043234018.1
TTTCCAAGTGACGAGccacagaaatatataaatagaagcCCAACCCTCATATTTTCAAATACGAGAGACATTAAGTGGGAGAGATCGTGGTTCAACGAGAGACTGATAAACAATGGCTCGTACCAAGCAGACCGCGCGTAAATCAACTGGAGGAAAGGCGCCAAGAAAACAGCTGGCGACTAAAGCCGCTAGGAAGAGCGCGCCCTCTACTGGTGGAGTCAAGAAGCCCCACAGATACAGACCTGGAACTGTTGCTCTGAGAGAGATCCGTCGTTATCAGAAGTCAACGGAGTTGCTCATCCGCAAGTTGCCATTTCAGCGTCTGGTTCGAGAGATCGCACAGGACTTCAAAACTGATCTGAGGTTCCAGAGTGCAGCCATTGGTGCACTTCAggAAGCAAGTGAAGCCTACCTTGTCGGTTTGTTTGAGGACACTAACTTGTGTGCCATCCATGCCAAGAGAGTCACAATCATGCCCAAGGATATCCAGCTTGCAAGGCGAATCAGAGGAGAGAGGGcataatttttagtttgtttttttgtttttgttttttattttaacttttaatgagAAACACTCAAAGTAAAAGCAATGGATTTGTACATTGGAGTCATTTTGTAAAGCATTCCTTACAGACTCAGGTTTTTAAAGTGAGTGTCTAGATTTAACCATTGTAGAGCTCATTGTAAAGCGGCTTTAGTTGCATGCTTTAAAGTATTTATCACTTATCTTTTACATTGATCATTgggttgtaaataaaattactctACCTCAAAA

Function

symbol description
h3f3a Part of nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

NR:

description
PREDICTED: histone H3-like centromeric protein CSE4

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006629 lipid metabolic process biological_process
GO:1902340 negative regulation of chromosome condensation biological_process
GO:0006997 nucleus organization biological_process
GO:0007596 blood coagulation biological_process
GO:0009725 response to hormone biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0090230 regulation of centromere complex assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005700 polytene chromosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31151 False 768 TUCP 0.43 4 17689379 17691189
TU31152 True 3128 TUCP 0.38 5 17663505 17691189
XM_043234018.1 False 778 mRNA 0.42 4 17689430 17691250

Neighbor

gene id symbol gene type direction distance location
il21r.1 LOC107703374,LOC107719177,LOC107550314,LOC107674618,LOC107741796,LOC107565769 coding downstream 97978 17559138 ~ 17565527 (-)
il21r.2 LOC107741794,LOC107565758 coding downstream 104504 17553390 ~ 17559001 (-)
pdpk1a LOC107741790,LOC107703375,LOC107565768,LOC107674683 coding downstream 112407 17539146 ~ 17551098 (-)
kctd5a kctd5a,kctd5,LOC107719174,LOC107703376,LOC108433156,LOC107741791,LOC107565771 coding downstream 125988 17527338 ~ 17537517 (-)
usp31 usp31,LOC107674671,LOC107565772,LOC107550315,LOC107703377 coding downstream 137014 17503877 ~ 17526491 (-)
igfals igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 coding upstream 27910 17719160 ~ 17721738 (-)
shisa9b shisa9b,LOC107596862,LOC107703332,LOC107674610,LOC107709140,LOC108440240 coding upstream 98302 17789552 ~ 17819424 (-)
LOC122342185 snrnp25,LOC107725014,LOC107703331 coding upstream 208182 17899432 ~ 17903051 (-)
snrnp25 snrnp25,LOC107703331,LOC107674670 coding upstream 211942 17903192 ~ 17904396 (-)
cdip1 cdip1,LOC107725021,LOC107674575,LOC107709142 coding upstream 214929 17906179 ~ 17914482 (-)
G20938 NA non-coding downstream 90678 17572425 ~ 17572827 (-)
G20937 NA non-coding downstream 91468 17571711 ~ 17572037 (-)
G20936 NA non-coding downstream 91845 17571301 ~ 17571660 (-)
G20933 NA non-coding downstream 93050 17569568 ~ 17570455 (-)
LOC122342167 NA non-coding downstream 162062 17499938 ~ 17501443 (-)
G21095 NA non-coding upstream 388232 18079482 ~ 18101929 (-)
G21317 NA non-coding upstream 554068 18245318 ~ 18245622 (-)
G21334 NA non-coding upstream 739643 18430893 ~ 18431472 (-)
G21340 clec16a,LOC107685907,LOC100711144 non-coding upstream 754999 18446249 ~ 18449094 (-)
G21360 NA non-coding upstream 801922 18493172 ~ 18494702 (-)
snn snn,LOC107564698,LOC107703342 other downstream 621091 17039187 ~ 17042414 (-)
uncx uncx,LOC107703385,LOC107674712,LOC107568937,LOC107745590 other downstream 789518 16862725 ~ 16873987 (-)
mafk mafk,LOC107703391,LOC107674662 other downstream 933816 16715721 ~ 16729689 (-)
LOC122341847 NA other downstream 1208026 16453074 ~ 16455479 (-)
G20680 LOC101886504,LOC101886427 other downstream 1211705 16451140 ~ 16451800 (-)
LOC122340174 LOC107710648,LOC107674639,LOC107565762 other upstream 15483 17706733 ~ 17718609 (-)
G21010 NA other upstream 229698 17920948 ~ 17921707 (-)
LOC122333861 eci1,LOC107568619,LOC107690250,LOC107733832,LOC107590612,LOC107685938 other upstream 344260 18035510 ~ 18044587 (-)
dexi dexi,LOC107590611,LOC107567922,LOC107733843,LOC107736577,LOC107685935,LOC107690264 other upstream 750615 18441865 ~ 18443213 (-)
LOC122341835 psmc3ip,LOC107721526,LOC107601296,LOC107654517,LOC107720012,LOC107688134,LOC107590372 other upstream 914015 18605265 ~ 18610693 (-)

Expression


Co-expression Network