LOC122341796 (pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586)


Basic Information

Item Value
gene id LOC122341796
gene name pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18074075 ~ 18075616 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU31290
CGAGAAGTTGAATCCAGaagaacttgtttttttttttgacaaatctGATACAGACGGTGTACGGGATGAGCTCGGGAAATAGCTGCGACAGTCTCAGCGACTCACCTGTGAACTCGATAAGAGCGGCAGGACCAACAACACCCAGAAGAGGACCACCTAAATTCAAACAGAGAATGACAAGGCAATTCAAAAGCAAACCTCCCAAGAAGGGAGTCAAAGTATTTGGAGATGAGATCCCAGGAATGGATGGTCTTGGCACTGACATCACCGTGGTGTGTCCGTGGGAAGCCTTTAGCCATCTGGAGTTGCACGAGCTCGCCCAGTATGGTATTATTTGAACTGGACGACGGAAAGATGTGTCACCAGGACTTGTTTAGTGGACTAGACTAGTTCCACCTCTGGATCCCAAATGAAGGATGCTTGCACCATTGCCTTGAAACAGTTTTATAAATGCCAACCCACCTGCCTATGAATGCACAACACGTAACTAGGAGGAATTAGGTTTATGAAGGTTTATAGGATGATATAAGTTTACAGAACGTGGATcgataatatttattgtaatactaCTTATTCCAGTTGGTTTGTGTTATTTTCCACAGCATAATACTTGTTTTCAATatgaacagtttttatttgtgctAATTCTGTAGTTAATTCTATAGACTCTTTTTAGTATATGTTTTGTGAGAGGAGAGGCCTTAATAGCTGTTTAAATCACTTTCACACATCCGTTGTATGATGTCTTAAGAGTTTCTTCAACTGTTAGCAAATTTGGCTTAAATGAAATAGACCTTA
>XM_043235425.1
AGAGTTGTTGACGGCTTGTATGCTTGCGAGTACAGAGTTTGTCTTGATTCATTTCCTCTGCAGATGCCGTGAATGAAGTGTTTGTTCTATCTAATCCGTGACAGACTCTCCAGGTGTCCTGAACTATGCGAGTTGGCCATTCAGAAAGATTTCTCAATGATTGTTCTTGGCCTTTTGCCCGAGTTAACCTGCGGCAGATTGCTGCTGTGTCGCTGTGTCAATCCGTCAGGCTTTGCTGTTGACCCACTGACGCAAACACAGACCAGCCTGAGAGTATTTAAGCCGGCTTTCCTCGACTTCAAGAAGAAAGACTCACGTTGAACGAGAAGTTGAATCCAGaagaacttgtttttttttttgacaaatctGATACAGACGGTGTACGGGATGAGCTCGGGAAATAGCTGCGACAGTCTCAGCGACTCACCTGTGAACTCGATAAGAGCGGCAGGACCAACAACACCCAGAAGAGGACCACCTAAATTCAAACAGAGAATGACAAGGCAATTCAAAAGCAAACCTCCCAAGAAGGGAGTCAAAGTATTTGGAGATGAGATCCCAGGAATGGATGGTCTTGGCACTGACATCACCGTGGTGTGTCCGTGGGAAGCCTTTAGCCATCTGGAGTTGCACGAGCTCGCCCAGTATGGTATTATTTGAACTGGACGACGGAAAGATGTGTCACCAGGACTTGTTTAGTGGACTAGACTAGTTCCACCTCTGGATCCCAAATGAAGGATGCTTGCACCATTGCCTTGAAACAGTTTTATAAATGCCAACCCACCTGCCTATGAATGCACAACACGTAACTAGGAGGAATTAGGTTTATGAAGGTTTATAGGATGATATAAGTTTACAGAACGTGGATcgataatatttattgtaatactaCTTATTCCAGTTGGTTTGTGTTATTTTCCACAGCATAATACTTGTTTTCAATatgaacagtttttatttgtgctAATTCTGTAGTTAATTCTATAGACTCTTTTTAGTATATGTTTTGTGAGAGGAGAGGCCTTAATAGCTGTTTAAATCACTTTCACACATCCGTTGTATGATGTCTTAAGAGTTTCTTCAACTGTTAGCAAATTTGGCTTAAATGAAATAGACCTTAAGCCGTGCtgttaaatatgttcaaataaagATTTGATGTAGA

Function

symbol description
pde6g Predicted to enable enzyme inhibitor activity. Predicted to be involved in positive regulation of G protein-coupled receptor signaling pathway and positive regulation of epidermal growth factor receptor signaling pathway. Predicted to act upstream of or within positive regulation of MAPK cascade. Predicted to be located in photoreceptor disc membrane and plasma membrane. Predicted to be active in photoreceptor outer segment membrane. Implicated in retinitis pigmentosa 57.

NR:

description
PREDICTED: retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13760 PDE6H; retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
TU31290 False 798 TUCP 0.40 3 18074397 18075574
XM_043235425.1 True 1162 mRNA 0.42 3 18074075 18075616

Neighbor

gene id symbol gene type direction distance location
dnase1 dnase1,LOC107733840,LOC107690335,LOC107568632,LOC107738635 coding upstream 38713 18032712 ~ 18035362 (+)
pde4a pde4a,LOC107596808,LOC107674699,LOC107703358,LOC108443456,LOC108257440,LOC106958375 coding upstream 47943 17980222 ~ 18026132 (+)
raver1 raver1,LOC107703359,LOC107587918,LOC107674651,LOC107596810,LOC107754048 coding upstream 103401 17954849 ~ 17970674 (+)
tyk2 tyk2,LOC107703360,LOC107587917,LOC107674650,LOC107596804 coding upstream 119743 17931705 ~ 17954332 (+)
unkl unkl,LOC107550311,LOC107674636,LOC107565763,LOC107710649,LOC107703366,LOC106601098 coding upstream 358453 17691906 ~ 17715622 (+)
c3h16orf72 zgc:66160,c2h16orf72,LOC107738628,LOC107590581,LOC107685917,LOC107690255,LOC105900007,LOC103025273 coding downstream 49378 18124994 ~ 18129811 (+)
atf7ip2 LOC107690257,LOC107733857 coding downstream 297141 18372757 ~ 18378482 (+)
ciita LOC107567931,LOC107733851,LOC107690261 coding downstream 350744 18426360 ~ 18437883 (+)
clec16a clec16a,LOC107690263,LOC107590577,LOC107567904 coding downstream 367755 18443371 ~ 18487548 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576,LOC107685906 coding downstream 419978 18495594 ~ 18504038 (+)
G21045 NA non-coding upstream 6757 17980167 ~ 18067318 (+)
G21049 NA non-coding upstream 31454 18035539 ~ 18042621 (+)
G21050 NA non-coding upstream 32393 18038561 ~ 18041682 (+)
G20994 NA non-coding upstream 210994 17862067 ~ 17863081 (+)
G20951 h3f3b,H3F3A,LOC105909691,LOC101073377,LOC107388308,LOC102790198,LOC107572204,LOC106578873 non-coding upstream 383787 17689415 ~ 17690288 (+)
G21073 NA non-coding downstream 40922 18116538 ~ 18119426 (+)
G21076 NA non-coding downstream 82555 18158171 ~ 18158546 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding downstream 499071 18574687 ~ 18744585 (+)
LOC122331012 NA non-coding downstream 576745 18652361 ~ 18654715 (+)
G21180 NA non-coding downstream 626968 18702584 ~ 18703683 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other upstream 144441 17920917 ~ 17929634 (+)
polr3k polr3k,LOC107703329 other upstream 167432 17904584 ~ 17906643 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other upstream 172584 17870177 ~ 17901491 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other upstream 350652 17719182 ~ 17723423 (+)
LOC122341316 NA other upstream 873445 17137930 ~ 17200630 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other downstream 22029 18097645 ~ 18101933 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 other downstream 330350 18405966 ~ 18425076 (+)
G21124 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266,LOC103366693 other downstream 367774 18443390 ~ 18843419 (+)
G21173 LOC107601293,LOC107688129,LOC107720008,LOC107654513 other downstream 606738 18682354 ~ 18687853 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other downstream 650345 18725961 ~ 18732098 (+)

Expression


Co-expression Network