G21124 (rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266,LOC103366693)


Basic Information

Item Value
gene id G21124
gene name rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266,LOC103366693
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18443390 ~ 18843419 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU31393
GTGAAAGCTCAGCgtgacagactgtgtgtgtgtgatctctcCTGTGTGAGAGAACATGGGACATATTTGGATATCCGAGAGCATTTACAGCACAAGCAATAATATCCAGCGGCTCGGATTATCGTTTAATAATCGCTCACCTCCCGCGCCTCGCCCCAGAGCCGCCTGATAGCGCGCGCGGATCCCGAGACGAGACGCGCGAACCTTCATCAATCTTTGTTATTCAGAGGAAAACAGAAAAGGAGCCATGATTTCTACCAGACGCGCTAGCATCGGCCGCTCGAGCTAAGTAAAGCGCGACCGTGGACACCCTGCTTAGTTTCCTCAGCCTAGCGCTTCTTTCTCGCATTTCACTAGGAATGTATTGCAATCGTAAGGAGTTTCTGCTGGATTAGAGCACTATGGTATAAAAGCAATGCTGTGCGCCTGTTGTTGACTCGCTAAGCTCACAGCTAATAGCGTTAGCCGATGGTGTTACTACATCTGAACAGCGGCTCGTCttaattacctttttaattagttttacgATAACAGATATCCATTCTTATTAGTAATATTGTCATAACAGTGCAGTTGGTTACTATATGAAATTGTAATGAGGTTATTTCTTTGTGGTGACAGCTTGGCAGGCGTATGCTAACAATGCACTAGCTCGATAGCTCTATTGCTTTTCTATCATAGCAATAACTTGCCACGATGAggtaaatgctttttaaacgCGTGTTATTTTCGTCTCGTATAATTATCGGTGATTTGCGCTCGTGTAAAGATATGTAAACAGCCTTGCGGTTCGGTTTTCCTGCCGTTGAAGTGAACCTGTGCGCTGATACCGTTTTAAGGCTGAATACGACTGGACGTTTTAAAGACTCCGGGCTGGAAGCGAGGGAAATGGTTTGATTTGGCCTGTCTGCAGAGTCGGCCTTTCAGAGATAGACCCGAGCCGAGACACCCATAGACCCCCAGAGCTCTGGAGGATCCAAGAAAGGGACACACACAGTTGTCTCCTATTCTTTACTCTGGCTCTGATGTGAGCAATCATGGGCACCCAGGGCAGCCCTGTGAAGAGCTACGACTACTTGCTCAAGTTCCTCCTGGTGGGAGACAGCGACGTGGGCAAAGGAGAGATCCTGGACAGCCTTCAAGACGGATCTGCCGAGTCTCCATATGCCTACAGCAGCGGAATAGACTACAAGACCACCACAATCCTGTTGGATGGGCGGAGAGTGAAGCTTGAGCTTTGGGACACCTCGGGACAAGGCAGATTCTGCACCATTTTCCGGTCGTACTCCAGGGGAGCGCAGGGGATCCTGTTGGTGTATGACATCACCAACCGCTGGTCGTTTGACGGGATAGACCGCTGGATCAGGGAGATTGATGAGCACGCACCTGGTGTACCCCGTATTCTTGTGGGTAACCGGCTGCACCTGGCATTCAAGCGTCAGGTCCCTACAGAACAGGCACGTGCGTACGCAGAAAAGAACGGCATGACGTTTTTCGAAGTGAGCCCTCTCTGCAACTTCAACGTCATTGAGTCGTTTACAGAGCTGTCGCGCATCGTGCTGATGAGGCATGGCATGGAGAAGTTTTGGAGGCCCAACAGAGTTTTCAGCCTGCAGGACTTGTGCTGCCGCGCCATTGTGTCCTGCACCCCCGTGCACCTAATCGATAAGCTGCCGCTTCCTGTGGCCATCAAGAGCCATCTGAAGTCGTTCTCCATGGCCAACGGCATGAATGCCGTCATGATGCACGGACGATCCTAC
>TU31398
AGACCACCACAATCCTGTTGGATGGGCGGAGAGTGAAGCTTGAGCTTTGGGACACCTCGGGACAAGGCAGATTCTGCACCATTTTCCGGTCGTACTCCAGGGGAGCGCAGGGGATCCTGTTGGTGTATGACATCACCAACCGCTGGTCGTTTGACGGGATAGACCGCTGGATCAGGGAGATTGATGAGCACGCACCTGGTGTACCCCGTATTCTTGTGGGTAACCGGCTGCACCTGGCATTCAAGCGTCAGGTCCCTACAGAACAGGCACGTGCGTACGCAGAAAAGAACGGTATGACGTTTTTCGAAGTGAGCCCTCTCTGCAACTTCAACGTCATTGAGTCGTTTACAGAGCTGTCGCGCATCGTGCTGATGAGGCATGGCATGGAGAAGTTTTGGAGGCCCAACAGAGTTTTCAGCCTGCAGGACTTGTGCTGCCGCGCCATTGTGTCCTGCACCCCCGTGCACCTAATCGATAAGCTGCCGCTTCCTGTGGCCATCAAGAGCCATCTGAAGTCGTTCTCCATGGCCAACGGCATGAATGCCGTCATGATGCACGGACGATCCTACTCGCTAGCCAACGCCGCCGGAGGCAGCAAAGGCAACAGCCTCAAACGCTCCAAATCCATCCGGCCGCCTCAGAGTCCGCCACAGAACTGCACCAGGAACAACTGTAAGATCTCCTAGCCTCTGGGCGCAGGGGCGGGGCTTCCCTTCCCTTACATAACACTCAGGTGCACTCGGACAAACACACCAGGAAACCAACACGGGGCTGGGCCAATGACGCGACAGGTGCGCCACCTCCCGGTGTGGGGAGAGCAGGATGTGAACAAACGCTTCCTGCCGCTACGGATGGCTACATTTCTCCCCTCACATTGCTGCAGTACAGTTGACTCCTCACTCACAGCTCGTGGATAAAAACAAACCCTTGGTCAGACTCTGATTTCGTTGCAGTGGCATGTTTCCTTCCGCGCTAGCGCCCTCTACTGGAGAGTCCGTGCCGCTCTATAACCCCGCGTTGGCTGAGAGGCCTCGTTTTGAAGTTGTTTTATGGGCTTATAATACGCTTTGGTTTTGTTCTCGTTTGCTCATGCTCATTATCCTCAGCGCTCTGCATATGGcgttcctcttttttttgtttgctctttGCAGGGGCCTGTTCTCCCTGCAAATACTGAAGTACCTCGTCACATGGTCTTGCATGCTTGCCAGCGATGAGAGGGCTGATGCAAAATGACATGTAGTGCTTACGTATGAACtgatgtattaaaaatgtgatttgcaCTGCAGATTGGTGGTCTCTGAATTTGCTGGTCGTTTGCACAATGACTGTGTTGTTGAATGTGGACTGTGGGACCATCGGCGGCGCAAGCATTTCCAGGCACCTTCTGTTCATTCACAATCTTTCCTCGCTGAAGATCCAGAAAGCGGTGATGTCGTCGGGTCAGAACTGTCTTCTCTTTAAACACAGATTACAGGAAATTTCTCCTCAGGGGACAGTATCGGCAAAggggtttttttgtcttttgtttactCTGGGCTTCTCGCTTTCtctcgttttgttttttcctgcaTGTCTTGTGGGAttatttgttgcatttacaATAGTTTTAAGCTTATACTGTAATGACCTTTCTCTTCTCGTGTCCACAATTTAATACCACAACTGCCTTGCAGCCCGATTTTCTcactcaaacaaacacttttcagTACCAGTTTCCGCCCTTTACCGGCTAAAATGCCCGATAATTTCAAAGTTCTACCAGTTTTTTAGTGTTGCAGCATGAGTTCGAAAGTCAGGTTTTTGCTCGAAGCCCTTTTAATCCGCATATACAGCATGGTTTCTCCTATAGATGTATGTCAGAATGAAGGATAATGAACCCGTTCGAGCTTGCTTCTAAATATCAAGCACAAACAAAGCAAGGGGAATCTACAGCACTTCTTTCGCTTCTCCCAGCGCATTTCTTCCAGGTCTGATGAGCCACAGTTGTCGAATAGAGGATGCCCTTCATTTCATCAAGCCTCCCAGCAGTCTTTTCCCCTTCTCTCCTCCGCCCCCTTCATCTCAGGGATGAGCCCTGGCCTCCAGCGGCACACCTGCCCGATGAAGCCCGTTTAAAGCGGGCTGAGTGACAGGCTGCCAGCAGGGGGCCTTTAAACTTTCCCAGAGGGCTGCGAGCTCTCGGTGTTTGACCTATAAGCTATTTGCTGCAGGCCTTTTGCAGTCGCTATAACCGATAGAATGATCCTGGCACATGTTGACTATGTGTTTTAGAGCAGTTGTGCGTATTGGTGTCCATCTGTTGGGTGACGTTAATGCTAAAGGGTCCACAGAAGGTGTTACTGCCCCCTCTCTTAATCTTTGAATACTCCCAAAAGGTTGTGGTAATAGAAATACTACAATGAagtgttgttttattctttttttgggCACCTGTAGGTATTAGTTTAACCCCATCGCCTGAGAGCAATGGTTGTTCTTCTCTGTTTTATGCACATTATATGGTGCAAAGAAATTCTGTGACTTAGTTAGAAGGTtccatttcaactttttttgtattgtaaagtgtttttcctctttgtAACTGAAGCCTccgattatattttaaaaacacaacaagctCATGGTTTTTAAGTCGGGCAGTGTGATGGGACCCTCCTGGTGTTGCCAAAGGAGTGGTCTCTAGTTCTGTGTGAATGGGATAAAGGGAAATGTGATTTGGTGGAGCAGTAGGAACACAATTGTAAACACTATTTTCCTTTGGTcgaagctaaaagctgctgaaTATCTTGCGTAATTATCTGACGTTCTNGAAAAGCAACGactttttcacaataaaattgTTATCAGTAAAACAAAGCTTTGAGGTTGTTTGACATGCTCTTCACAGATGACACTTATGGtctttacatattaaaatatttatttgctgatATTTACACAGACA
>TU31399
CTGGGCCTTCACTGCGGCGGATATGGATCCATTCGCCTAGCAAATTGCGTTAAAACGTACATATTGCAAAACATAACAACAGAAAAATGTTCGGCCGTTCAAGGAGCTGGGTCGGAGGGCAGGGGAAGTCCAAAAACATTCATTCTTTGGACCATTTGAAgtaCATGTACCATGTCCTAACAAAGAACACAACAGTTACTGATCACAACAGAAATCTGCTGGTGGAAACCATCCGCTCCATTACTGAGATTCTCATCTGGGGTGATCAAAATGACAGCTCTGTCTTTGActTCTTTTTGGAAAAgaacatgtttgcatttttccTCAACATACTACGGCAGAAATCTGGGCgctatgtgtgtgttcagcttCTGCAGACGCTCAACATCCTCTTTGAAAACATCAGTCATGAGACTTCTCTTTATTATTTGCTGTCAAATAATCATGTTAATTCCATCATTGTGCACAAATTCGACTTCTCTGATGAAGAAATTATGGCCTACTATATCTCTTTTTTGAAAACGTTGTCTCTGAAACTCAACAACCACACAGTGCACTTCTTCTACAACGAGCACACTAATGATTTTGCCCTGTACACGGAGGCCATTAAGTTTTTCAACCACCCAGAGAGCATGGTCAGGATCGCGGTCAGGACTATCACACTCAATGTGTACAAAGGTGAGTAGAGCCCTGACTCGGCTGCTGCCGCTGCCGCCCGATCCTCCTCTCTTCTGTCAATCGCTCTGTCATGCCTCTGATGCATGGGCATGCTGACGTTGCTCTCTGCCATCTGTGAgtaacacacacttacatttagcGAGCGCTGCTGACTCCACGCACATGCACGGGCACACCGGGGTTTCACTTGGGTATGGTCACGTGCTGAAGAGACTGAAGAGCTTTCGCTGATCTGTTTCATGGCTTGTGCTTGTGTGTAAATCCTTCTTCTCTTCTTGAATAAACTTAACCTTTCTTACTCTCTGCTTGGCACTTGCCCTTGAACTGCGCTCTGTCTTATAGCTAATCAGCCGTTGGAGATTGTTTAAAGTCAGGGAAGTCAAGCTGCCATCGGTGCATGTTACTCACGTTAATGTAAATTCAGTGGCCTTAAATAATATTTGGAGATGCAAACAACacttaaaggtttttaaatgtcattgcaTTGAATAAACATCCCTTTACAAGtctttttttgaatgaaagcCAGTTGGTGCAataatattcttatttaataacCGATAAATGTTGAATATTATTAGATATCTTGAATCTATATTTTGACTCGTTGCAAAAAATGTAGTCATCTAAAAAGTTCAAATCTCTGTGTTCTTCAAATTACTTTATGGGATGATATGACCAATGTAGGCTTGTTATAAACAGTTTGTACATTCCTACAAtacaacaatacaatacaaatgttatttctgtagtacatttaaagtgctttgCGTGCATAAAGGCAATATACAATTAAGTATATTTCatccaaaccaaaaaaaaaaatcttgtttacTTACTGCcaattttcttttatgaatgataaaaagaaaatataacttctaaaataaagataaaaataataaaaaggtgtcTTAAAAAGAAACTCGAAGTAACATCCAAACCAtctattttatgttgtttttagcaATGTATAGGCCAAATAGAAAAAACGTGGTCATCCATGATCacttttttgtcttaaatatcAGCCGGATTTTTAGTCAATGaccataatataaaacatttacatctgAGTCCGCAGAAACCTTCGTGACTGCAGTGCACCATGTGTGTTCATGATTTTAGGTAATGCAATAACATTCATACATTAAGTGTTGCTTAAATGTCCTATCTGTGGCTTTCTGCATATGGCGGTTCACATGCTAATTACAATGTAAATGCACTGAATTAACTGCAAGAATTTCAATTAAAATCCCTGATTGTCAGAAAAAGTAGTTGGGTATGCTTTGCTTTTTCCATGTCCTAGCAGCTTTGTGGATCTGGTTGATTTGTCTGGTGTTTTTAGGCTGTTCATGGTTCCAGATGCTCTTTTGTGCAGGCTTAGTACCAGCCACTAGGTGGTGTGATGGTTTCATCTTTGGGCTTGTCGGGCCCAGAACTCCACTAGCTCAGTCCCTTCATCCTGTTTAACCCTTTGTCTGTTCTTCCCCTCTCCCTCTATGGTGACTCCTGTGTGCCTTATTCCAGTGTCATGTAAGTTGGTTAAATTCAGAACTTTCTTATGCCGCTTGTATTGCATGTACtcttaaacagttttttttttcttcacagttgcttcttgtctttttttgtggattttacACCTGTGTACACACTGATAGTagttaaaatacattgtttgcACTATCACACggtttttgggctttttttaaTGGTGATTTTTTGGCAATATCAGttgtatgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtagggggaGGTACAGTCAGTCAGAGGTGAAAGCTCAGCgtgacagactgtgtgtgtgtgatctctcCTGTGTGAGAGAACATGGGACATATTTGGATATCCGAGAGCATTTACAGCACAAGCAATAATATCCAGCGGCTCGGATTATCGTTTAATAATCGCTCACCTCCCGCGCCTCGCCCCAGAGCCGCCTGATAGCGCGCGCGGATCCCGAGACGAGACGCGCGAACCTTCATCAATCTTTGTTATTCAGAGGAAAACAGAAAAGGAGCCATGATTTCTACCAGACGCGCTAGCATCGGCCGCTCGAGCTAAGTAAAGCGCGACCGTGGACACCCTGCTTAGTTTCCTCAGCCTAGCGCTTCTTTCTCGCATTTCACTAGGAATGTATTGCAATCGTAAGGAGTTTCTGCTGGATTAGAGCACTATGGTATAAAAGCAATGCTGTGCGCCTGTTGTTGACTCGCTAAGCTCACAGCTAATAGCGTTAGCCGATGGTGTTACTACATCTGAACAGCGGCTCGTCttaattacctttttaattagttttacgATAACAGATATCCATTCTTATTAGTAATATTGTCATAACAGTGCAGTTGGTTACTATATGAAATTGTAATGAGGTTATTTCTTTGTGGTGACAGCTTGGCAGGCGTATGCTAACAATGCACTAGCTCGATAGCTCTATTGCTTTTCTATCATAGCAATAACTTGCCACGATGAggtaaatgctttttaaacgCGTGTTATTTTCGTCTCGTATAATTATCGGTGATTTGCGCTCGTGTAAAGATATGTAAACAGCCTTGCGGTTCGGTTTTCCTGCCGTTGAAGTGAACCTGTGCGCTGATACCGTTTTAAGGCTGAATACGACTGGACGTTTTAAAGACTCCGGGCTGGAAGCGAGGGAAATGGTTTGATTTGGCCTGTCTGCAGAGTCGGCCTTTCAGAGATAGACCCGAGCCGAGACACCCATAGACCCCCAGAGCTCTGGAGGATCCAAGAAAGGGACACACACAGTTGTCTCCTATTCTTTACTCTGGCTCTGATGTGAGCAATCATGGGCACCCAGGGCAGCCCTGTGAAGAGCTACGACTACTTGCTCAAGTTCCTCCTGGTGGGAGACAGCGACGTGGGCAAAGGAGAGATCCTGGACAGCCTTCAAGACGGATCTGCCGAGTCTCCATATGCCTACAGCAGCGGAATAGACTACAAGACCACCACAATCCTGTTGGATGGGCGGAGAGTGAAGCTTGAGCTTTGGGACACCTCGGGACAAGGCAGATTCTGCACCATTTTCCGGTCGTACTCCAGGGGAGCGCAGGGGATCCTGTTGGTGTATGACATCACCAACCGCTGGTCGTTTGACGGGATAGACCGCTGGATCAGGGAGATTGATGAGCACGCACCTGGTGTACCCCGTATTCTTGTGGGTAACCGGCTGCACCTGGCATTCAAGCGTCAGGTCCCTACAGAACAGGCACGTGCGTACGCAGAAAAGAACGGCATGACGTTTTTCGAAGTGAGCCCTCTCTGCAACTTCAACGTCATTGAGTCGTTTACAGAGCTGTCGCGCATCGTGCTGATGAGGCATGGCATGGAGAAGTTTTGGAGGCCCAACAGAGTTTTCAGCCTGCAGGACTTGTGCTGCCGCGCCATTGTGTCCTGCACCCCCGTGCACCTAATCGATAAGCTGCCGCTTCCTGTGGCCATCAAGAGCCATCTGAAGTCGTTCTCCATGGCCAACGGCATGAATGCCGTCATGATGCACGGACGATCCTAC

Function

symbol description
rab40c Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Is expressed in central nervous system; cranial ganglion; forebrain; and retina. Orthologous to human RAB40C (RAB40C, member RAS oncogene family).

NR:

description
ras-related protein Rab-40C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31393 False 1760 TUCP 0.50 6 18506130 18517665
TU31398 False 2947 TUCP 0.48 5 18835659 18843419
TU31399 True 4238 TUCP 0.44 11 18443390 18517665

Neighbor

gene id symbol gene type direction distance location
ciita LOC107567931,LOC107733851,LOC107690261 coding upstream 5507 18426360 ~ 18437883 (+)
atf7ip2 LOC107690257,LOC107733857 coding upstream 64908 18372757 ~ 18378482 (+)
c3h16orf72 zgc:66160,c2h16orf72,LOC107738628,LOC107590581,LOC107685917,LOC107690255,LOC105900007,LOC103025273 coding upstream 313579 18124994 ~ 18129811 (+)
dnase1 dnase1,LOC107733840,LOC107690335,LOC107568632,LOC107738635 coding upstream 408028 18032712 ~ 18035362 (+)
pde4a pde4a,LOC107596808,LOC107674699,LOC107703358,LOC108443456,LOC108257440,LOC106958375 coding upstream 417258 17980222 ~ 18026132 (+)
LOC122329464 rps15a,RPS15A,MGC114789,LOC107686992,LOC106589173 coding downstream 112611 18956030 ~ 18959493 (+)
LOC122341328 si:dkey-202l16.5,LOC107690339,LOC107733837,LOC107685903,LOC107590608,LOC107729185 coding downstream 278904 19122323 ~ 19128648 (+)
xylt1 xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755 coding downstream 360060 19203479 ~ 19261885 (+)
c3h17orf75 zgc:153240,LOC107690268,LOC107567861,LOC107729180,LOC107755588,LOC107590573,LOC107687012 coding downstream 449382 19292801 ~ 19297531 (+)
ppp4ca ppp4c,LOC107729194,LOC107755586,LOC107690278,LOC107590569,LOC107567834 coding downstream 533556 19376975 ~ 19380629 (+)
G21076 NA non-coding upstream 284844 18158171 ~ 18158546 (+)
G21073 NA non-coding upstream 323964 18116538 ~ 18119426 (+)
G21045 NA non-coding upstream 376072 17980167 ~ 18067318 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding downstream 10690 18854109 ~ 18854543 (+)
G21151 NA non-coding downstream 415498 19258917 ~ 19287649 (+)
G21215 NA non-coding downstream 461433 19304852 ~ 19305058 (+)
G21239 LOC107687002 non-coding downstream 594588 19438007 ~ 19440646 (+)
LOC122341657 NA non-coding downstream 612007 19455426 ~ 19459635 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 other upstream 18314 18405966 ~ 18425076 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other upstream 341457 18097645 ~ 18101933 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other upstream 367774 18074075 ~ 18075616 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other upstream 513756 17920917 ~ 17929634 (+)
polr3k polr3k,LOC107703329 other upstream 536747 17904584 ~ 17906643 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other downstream 25847 18869266 ~ 18876127 (+)
G21202 NA other downstream 148039 18991458 ~ 18993234 (+)
G21213 NA other downstream 448026 19291445 ~ 19292341 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other downstream 555989 19399408 ~ 19403176 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 1220851 20064270 ~ 20069253 (+)

Expression


Co-expression Network