Gene
RNA
| Item | Value |
|---|---|
| gene id | G18015 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 7555678 ~ 7556054 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU20262 | True | 377 | lncRNA | 0.38 | 1 | 7555678 | 7556054 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_07492000_07496973 | SPSB1, SPSB4 | coding | downstream | 58705 | 7491422 ~ 7496973 (-) |
| CI01000001_07399727_07402300 | NA | coding | downstream | 151996 | 7399645 ~ 7403682 (-) |
| CI01000001_07382559_07385351 | NA | coding | downstream | 170048 | 7382227 ~ 7385630 (-) |
| CI01000001_07311570_07321107 | NA | coding | downstream | 234308 | 7310661 ~ 7321370 (-) |
| CI01000001_07270003_07290702 | PHC2A | coding | downstream | 264910 | 7269685 ~ 7290768 (-) |
| CI01000001_07565885_07567962 | NA | coding | upstream | 9316 | 7565370 ~ 7567962 (-) |
| CI01000001_07568083_07573146 | CA6 | coding | upstream | 12029 | 7568083 ~ 7573339 (-) |
| CI01000001_07609855_07631058 | NA | coding | upstream | 53766 | 7609820 ~ 7631285 (-) |
| CI01000001_07769921_07796135 | NA | coding | upstream | 213035 | 7769089 ~ 7796547 (-) |
| CI01000001_07807093_07808245 | NA | coding | upstream | 249859 | 7805913 ~ 7808493 (-) |
| G18012 | NA | non-coding | downstream | 1647 | 7553795 ~ 7554031 (-) |
| G18011 | NA | non-coding | downstream | 1966 | 7553498 ~ 7553712 (-) |
| G18010 | NA | non-coding | downstream | 2469 | 7552837 ~ 7553209 (-) |
| G18005 | NA | non-coding | downstream | 28197 | 7527184 ~ 7527481 (-) |
| G18004 | NA | non-coding | downstream | 28908 | 7526516 ~ 7526770 (-) |
| G18017 | NA | non-coding | upstream | 18847 | 7574901 ~ 7575135 (-) |
| G17951 | NA | non-coding | upstream | 28483 | 7584537 ~ 7586098 (-) |
| G17950 | NA | non-coding | upstream | 30452 | 7586506 ~ 7588473 (-) |
| G18141 | NA | non-coding | upstream | 172069 | 7728123 ~ 7737484 (-) |
| G17911 | NA | other | downstream | 302424 | 7251311 ~ 7267952 (-) |
| CI01000001_06932075_06937182 | NA | other | downstream | 618455 | 6931621 ~ 6937231 (-) |
| G17789 | NA | other | downstream | 665264 | 6837525 ~ 6890414 (-) |
| G16753 | NA | other | downstream | 940089 | 6583054 ~ 6615589 (-) |
| G16664 | NA | other | downstream | 1207723 | 6344104 ~ 6347955 (-) |
| G18023 | NA | other | upstream | 200447 | 7756501 ~ 7757520 (-) |
| G18223 | NA | other | upstream | 370050 | 7926104 ~ 7928517 (-) |
| CI01000001_09804494_09811219 | NA | other | upstream | 2253603 | 9804429 ~ 9811219 (-) |
| G20136 | NA | other | upstream | 2982973 | 10539027 ~ 10539850 (-) |
| CI01000001_10862471_10864514 | NA | other | upstream | 3306171 | 10862225 ~ 10865770 (-) |
