LOC122341799 (rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693)


Basic Information

Item Value
gene id LOC122341799
gene name rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18828665 ~ 18841760 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU31495
GGCTGATAGAAGAGAGGGATCGCGGCTGAGAGCTGAATGGACCAGGTTTGCTCGAAATGTAAAGATGACAAAACATTAGGAGTGTTTTATGAAGCTTAACGTTTATTATACAAGTATAAACAACCGATTTTAAGAAGTTACTTGCCTTTGGTtactatactgtaaaaatacgaGAGTCTTTATTTATCTACTAATGTGACGCAACAGCATCAGTGGATCCACAACCAGAATCTTTGAACAATAGGACAAGCTTTAGTGTAGTGGACATGAGATTCTGAACACAGTAGAGACCAGACAGTTACATGATGTACCAGAATGGGTCATCGGGCTGATGTGAAGATGAACCACAGGAGCAGCCCAGCAAAAGCTTATGATTTCCTCCTGAAATTCCTGCTGGTTGGAGACAGTGATGTTGGGAAAGGGGAAATACTGGCCAGTCTACAGGATGGGTCCAGTGAGTCACCCTATGGATACAATATGG
>XM_043235430.1
TCGCATTTTTCTGTTTAGGGAGGCTGATAGAAGAGAGGGATCGCGGCTGAGAGCTGAATGGACCAGGTTTGCTCGAAATGTAAAGATGACAAAACATTAGGAGTGTTTTATGAAGCTTAACGTTTATTATACAAGTATAAACAACCGATTTTAAGAAGTTACTTGCCTTTGGTtactatactgtaaaaatacgaGAGTCTTTATTTATCTACTAATGTGACGCAACAGCATCAGTGGATCCACAACCAGAATCTTTGAACAATAGGACAAGCTTTAGTGTAGTGGACATGAGATTCTGAACACAGTAGAGACCAGTGAGTACTAcctagatttgtttttaaagcagctATATTGTTCAGTTGCACTGGTGGTCTGAGATATTTAATACAAGTCCATCAAAGGACAGTTACATGATGTACCAGAATGGGTCATCGGGCTGATGTGAAGATGAACCACAGGAGCAGCCCAGCAAAAGCTTATGATTTCCTCCTGAAATTCCTGCTGGTTGGAGACAGTGATGTTGGGAAAGGGGAAATACTGGCCAGTCTACAGGATGGGTCCAGTGAGTCACCCTATGGATACAATATGGGAATAGACTACAAGACCACCACAATCCTGTTGGATGGGCGGAGAGTGAAGCTTGAGCTTTGGGACACCTCGGGACAAGGCAGATTCTGCACCATTTTCCGGTCGTACTCCAGGGGAGCGCAGGGGATCCTGTTGGTGTATGACATCACCAACCGCTGGTCGTTTGACGGGATAGACCGCTGGATCAGGGAGATTGATGAGCACGCACCTGGTGTACCCCGTATTCTTGTGGGTAACCGGCTGCACCTGGCATTCAAGCGTCAGGTCCCTACAGAACAGGCACGTGCGTACGCAGAAAAGAACGGTATGACGTTTTTCGAAGTGAGCCCTCTCTGCAACTTCAACGTCATTGAGTCGTTTACAGAGCTGTCGCGCATCGTGCTGATGAGGCATGGCATGGAGAAGTTTTGGAGGCCCAACAGAGTTTTCAGCCTGCAGGACTTGTGCTGCCGCGCCATTGTGTCCTGCACCCCCGTGCACCTAATCGATAAGCTGCCGCTTCCTGTGGCCATCAAGAGCCATCTGAAGTCGTTCTCCATGGCCAACGGCATGAATGCCGTCATGATGCACGGACGATCCTACTCGCTAGCCAACGCCGCCGGAGGCAGCAAAGGCAACAGCCTCAAACGCTCCAAATCCATCCGGCCGCCTCAGAGTCCGCCACAGAACTGCACCAGGAACAACTGTAAGATCTCCTAGCCTCTGGGCGCAGGGGCGGGGCTTCCCTTCCCTTACATAACACTCAGGTGCACTCGGACAAACACACCAGGAAACCAACACGGGGCTGGGCCAATGACGCGACAGGTGCGCCACCTCCCGGTGTGGGGAGAGCAGGATGTGAACAAACGCTTCCTGCCGCTACGGATGGCTACATTTCTCCCCTCACATTGCTGCAGTACAGTTGACTCCTCACTCACAGCTCGTGGATAAAAACAAACCCTTGGTCAGACTCTGATTTCGTTGCAGTGGCATGTTTCCTTCCGCGCTAGCGCCCTCTACTGGAGAGTCCGTGCCGCTCTATAACCCCGCGTTGGCTGAGAGGCCTCGTTTTGAAGTTGTTTTATGGGCTTATAATACGCTTTGGTTTTGTTCTCGTTTGCTCATGCTCATTATCCTCAGCGCTCTGCATATGGcgttcctcttttttttgtttgctctttGCAGGGGCCTGTTCTCCCTGCAAATACTGAAGTACCTCGTCACATGGTCTTGCATGCTTGCCAGCGATGAGAGGGCTGATGCAAAATGACATGTAGTGCTTACGTATGAACtgatgtattaaaaatgtgatttgcaCTGCA

Function

symbol description
rab40c Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Is expressed in central nervous system; cranial ganglion; forebrain; and retina. Orthologous to human RAB40C (RAB40C, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-40C-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07928 RAB40; Ras-related protein Rab-40

RNA

RNA id representative length rna type GC content exon number start site end site
TU31495 False 481 lncRNA 0.42 2 18828686 18829253
XM_043235430.1 True 1889 mRNA 0.50 6 18828665 18841760

Neighbor

gene id symbol gene type direction distance location
LOC122342072 psmc3ip,LOC107721526,LOC107654517,LOC107601296,LOC107720012,LOC107590372,LOC107688134 coding upstream 108943 18714925 ~ 18719722 (+)
retreg3 fam134c,LOC107601294,LOC107590373,LOC107720010,LOC107654515,LOC107688130 coding upstream 117030 18704513 ~ 18711635 (+)
LOC122341319 psmc3ip,LOC107601296,LOC107721526,LOC107654517,LOC107720012,LOC107590372,LOC107688134 coding upstream 254246 18572664 ~ 18574419 (+)
LOC122341960 llgl1,LOC107720045,LOC107674688,LOC107703430 coding upstream 262059 18550993 ~ 18566606 (+)
LOC122342138 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 coding upstream 278238 18545034 ~ 18550427 (+)
LOC122329464 rps15a,RPS15A,MGC114789,LOC107686992,LOC106589173 coding downstream 114270 18956030 ~ 18959493 (+)
LOC122341328 si:dkey-202l16.5,LOC107690339,LOC107733837,LOC107685903,LOC107590608,LOC107729185 coding downstream 280563 19122323 ~ 19128648 (+)
xylt1 xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755 coding downstream 361719 19203479 ~ 19261885 (+)
c3h17orf75 zgc:153240,LOC107690268,LOC107567861,LOC107729180,LOC107755588,LOC107590573,LOC107687012 coding downstream 451041 19292801 ~ 19297531 (+)
ppp4ca ppp4c,LOC107729194,LOC107755586,LOC107690278,LOC107590569,LOC107567834 coding downstream 535215 19376975 ~ 19380629 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding upstream 84080 18574687 ~ 18744585 (+)
G21180 NA non-coding upstream 124982 18702584 ~ 18703683 (+)
LOC122331012 NA non-coding upstream 173950 18652361 ~ 18654715 (+)
G21076 NA non-coding upstream 670119 18158171 ~ 18158546 (+)
G21073 NA non-coding upstream 709239 18116538 ~ 18119426 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding downstream 12349 18854109 ~ 18854543 (+)
G21151 NA non-coding downstream 417157 19258917 ~ 19287649 (+)
G21215 NA non-coding downstream 463092 19304852 ~ 19305058 (+)
G21239 LOC107687002 non-coding downstream 596247 19438007 ~ 19440646 (+)
LOC122341657 NA non-coding downstream 613666 19455426 ~ 19459635 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other upstream 94900 18733165 ~ 18733765 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other upstream 96567 18725961 ~ 18732098 (+)
G21173 LOC107601293,LOC107688129,LOC107720008,LOC107654513 other upstream 140812 18682354 ~ 18687853 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 other upstream 403589 18405966 ~ 18425076 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other upstream 726732 18097645 ~ 18101933 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other downstream 27506 18869266 ~ 18876127 (+)
G21202 NA other downstream 149698 18991458 ~ 18993234 (+)
G21213 NA other downstream 449685 19291445 ~ 19292341 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other downstream 557648 19399408 ~ 19403176 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 1222510 20064270 ~ 20069253 (+)

Expression


Co-expression Network