G21541


Basic Information

Item Value
gene id G21541
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19791526 ~ 19796812 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU31989
agatccataattttttttatttcccggATAACTGAAGAAATGCATCAAGGACACAAATAGCTGATAACGGTTTCTCAAAGAATTCATTGTACAATAAAGTGAATATACATAgtgcagtgtatatatatatatatatatatatatatatatgtacacacagtatacacaccATTAAGTGAGAGTTAAAGGTACAGATACACAAAGTGGGAAACAAACCTAGACTGACAGACGTTTAAAAAGCGGTTACACAATGAAGAAACATCATTTTCAATCATATTTTCTATCGAGGTGCTACCTTACAACACCAATGATCAGTGAATTAAAgaatgaaattataaatatgtgtgcGTATTtctatatatgtgcatgtatgtgagTCTGTGTCAATATAGTCCTGCTGGCTCTGTCCAAGATCTTTGTTGCCATCCACGTTAGCACACTAAACATCATACTGGATTACACAATAACATGGTTACACAATATCACATTTGTTCGTCCGTGTAATGTATAATCATACATATTTATCTTCTTCCATTCACTTCCCGAAAACCATTTAATAAaagagtaaaatatttttcatcgACATTAAAATACACTATATTCACGTAAACCAGAAGCTAAAAGGGATGTTATAGACCTGCATGCACTTACTTCACATCATCATCCTGCTATAAATGATACTTCTGTACCAATCCTTTCCATCAATACTACAGTGACGTTTACAGCCCTTTCGCGCTCATGAGTCAAAGATCAATATAAAGAACAAAGTATTCACCGGCCCTATGCTATGCTAACAGcgcaaaatatgttttgtactGGCTAACACCAGTGAACAAATACAAGTCAAAGGCTATTTctgttatcaaaaaaaaaaaaaaagattatgacTACCATTGAGTCATGGCCAAATGTTctcaatgaaacattttaaagagccGTAATATTCACACTTTCATTTGCAAACAAAAGAGCTTAACTGAAGGCCTCCCATTCCTATAAAATAAGCAAAGAGTTACATCTTAATCGTCGAATGAGCTCGTTTGCATACCGATACATATGCATTAAGGACGAAAGGTTAAAACTGTTGTTATGTTTGCACACTTTTGGCTATGACCGTTTAAACAAAAGGCGAAACAAATGGCtcggagagaaaaaaaaaataaaaaaagcagctgTAGCACCTAAGCGTTATGTACACAATTCCATAATCCAAgtggagacaaaaaaaaaaaaaaaaagaactaaaaagtTAGAAAACTAAGCATTTCGGCAGGTGTCCATATCTGAGACCGTGGAGGCTGCAAAGCCTTCTCTCATTGGTGAGGGATGATCGGAGCTCAACTCCATGTCCAGAGTGAGA
>TU31991
agatccataattttttttatttcccggATAACTGAAGAAATGCATCAAGGACACAAATAGCTGATAACGGTTTCTCAAAGAATTCATTGTACAATAAAGTGAATATACATAgtgcagtgtatatatatatatatatatatatatatatacacacagtatacacaccATTAAGTGAGAGTTAAAGGTACAGATACACAAAGTGGGAAACAAACCTAGACTGACAGACGTTTAAAAAGCGGTTACACAATGAAGAAACATCATTTTCAATCATATTTTCTATCGAGGTGCTACCTTACAACACCAATGATCAGTGAATTAAAgaatgaaattataaatatgtgtgcGTATTtctatatatgtgcatgtatgtgagTCTGTGTCAATATAGTCCTGCTGGCTCTGTCCAAGATCTTTGTTGCCATCCACGTTAGCACACTAAACATCATACTGGATTACACAATAACATGGTTACACAATATCACATTTGTTCGTCCGTGTAATGTATAATCATACATATTTATCTTCTTCCATTCACTTCCCGAAAACCATTTAATAAaagagtaaaatatttttcatcgACATTAAAATACACTATATTCACGTAAACCAGAAGCTAAAAGGGATGTTATAGACCTGCATGCACTTACTTCACATCATCATCCTGCTATAAATGATACTTCTGTACCAATCCTTTCCATCAATACTACAGTGACGTTTACAGCCCTTTCGCGCTCATGAGTCAAAGATCAATATAAAGAACAAAGTATTCACCGGCCCTATGCTATGCTAACAGcgcaaaatatgttttgtactGGCTAACACCAGTGAACAAATACAAGTCAAAGGCTATTTctgttatcaaaaaaaaaaaaaaagattatgacTACCATTGAGTCATGGCCAAATGTTctcaatgaaacattttaaagagccGTAATATTCACACTTTCATTTGCAAACAAAAGAGCTTAACTGAAGGCCTCCCATTCCTATAAAATAAGCAAAGAGTTACATCTTAATCGTCGAATGAGCTCGTTTGCATACCGATACATATGCATTAAGGACGAAAGGTTAAAACTGTTGTTATGTTTGCACACTTTTGGCTATGACCGTTTAAACAAAAGGCGAAACAAATGGCtcggagagaaaaaaaaaataaaaaaagcagctgTAGCACCTAAGCGTTATGTACACAATTCCATAATCCAAgtggagacaaaaaaaaaaaaaaaaagaactaaaaagtTAGAAAACTAAGCATTTCGGCAGGTGTCCATATCTGAGACCGTGGAGGCTGCAAAGCCTTCTCTCATTGGTGAGGGATGATCGGAGCTCAACTCCATGTCCAGAGTGAGA
>TU31992
agatccataattttttttatttcccggATAACTGAAGAAATGCATCAAGGACACAAATAGCTGATAACGGTTTCTCAAAGAATTCATTGTACAATAAAGTGAATATACATAgtgcagtgtatatatatatatatatatatatatatatacacacacagtatacacaccATTAAGTGAGAGTTAAAGGTACAGATACACAAAGTGGGAAACAAACCTAGACTGACAGACGTTTAAAAAGCGGTTACACAATGAAGAAACATCATTTTCAATCATATTTTCTATCGAGGTGCTACCTTACAACACCAATGATCAGTGAATTAAAgaatgaaattataaatatgtgtgcGTATTtctatatatgtgcatgtatgtgagTCTGTGTCAATATAGTCCTGCTGGCTCTGTCCAAGATCTTTGTTGCCATCCACGTTAGCACACTAAACATCATACTGGATTACACAATAACATGGTTACACAATATCACATTTGTTCGTCCGTGTAATGTATAATCATACATATTTATCTTCTTCCATTCACTTCCCGAAAACCATTTAATAAaagagtaaaatatttttcatcgACATTAAAATACACTATATTCACGTAAACCAGAAGCTAAAAGGGATGTTATAGACCTGCATGCACTTACTTCACATCATCATCCTGCTATAAATGATACTTCTGTACCAATCCTTTCCATCAATACTACAGTGACGTTTACAGCCCTTTCGCGCTCATGAGTCAAAGATCAATATAAAGAACAAAGTATTCACCGGCCCTATGCTATGCTAACAGcgcaaaatatgttttgtactGGCTAACACCAGTGAACAAATACAAGTCAAAGGCTATTTctgttatcaaaaaaaaaaaaaaagattatgacTACCATTGAGTCATGGCCAAATGTTctcaatgaaacattttaaagagccGTAATATTCACACTTTCATTTGCAAACAAAAGAGCTTAACTGAAGGCCTCCCATTCCTATAAAATAAGCAAAGAGTTACATCTTAATCGTCGAATGAGCTCGTTTGCATACCGATACATATGCATTAAGGACGAAAGGTTAAAACTGTTGTTATGTTTGCACACTTTTGGCTATGACCGTTTAAACAAAAGGCGAAACAAATGGCtcggagagaaaaaaaaaataaaaaaagcagctgTAGCACCTAAGCGTTATGTACACAATTCCATAATCCAAgtggagacaaaaaaaaaaaaaaaaagaactaaaaagtTAGAAAACTAAGCATTTCGGCAGGTGTCCATATCTGAGACCGTGGAGGCTGCAAAGCCTTCTCTCATTGGTGAGGGATGATCGGAGCTCAACTCCATGTCCAGAGTGAGA
>TU31997
agatccataattttttttatttcccggATAACTGAAGAAATGCATCAAGGACACAAATAGCTGATAACGGTTTCTCAAAGAATTCATTGTACAATAAAGTGAATATACATAgtgcagtgtatatatatatatatatatatatatatatatgtatacacacagtatacacaccATTAAGTGAGAGTTAAAGGTACAGATACACAAAGTGGGAAACAAACCTAGACTGACAGACGTTTAAAAAGCGGTTACACAATGAAGAAACATCATTTTCAATCATATTTTCTATCGAGGTGCTACCTTACAACACCAATGATCAGTGAATTAAAgaatgaaattataaatatgtgtgcGTATTtctatatatgtgcatgtatgtgagTCTGTGTCAATATAGTCCTGCTGGCTCTGTCCAAGATCTTTGTTGCCATCCACGTTAGCACACTAAACATCATACTGGATTACACAATAACATGGTTACACAATATCACATTTGTTCGTCCGTGTAATGTATAATCATACATATTTATCTTCTTCCATTCACTTCCCGAAAACCATTTAATAAaagagtaaaatatttttcatcgACATTAAAATACACTATATTCACGTAAACCAGAAGCTAAAAGGGATGTTATAGACCTGCATGCACTTACTTCACATCATCATCCTGCTATAAATGATACTTCTGTACCAATCCTTTCCATCAATACTACAGTGACGTTTACAGCCCTTTCGCGCTCATGAGTCAAAGATCAATATAAAGAACAAAGTATTCACCGGCCCTATGCTATGCTAACAGcgcaaaatatgttttgtactGGCTAACACCAGTGAACAAATACAAGTCAAAGGCTATTTctgttatcaaaaaaaaaaaaaaagattatgacTACCATTGAGTCATGGCCAAATGTTctcaatgaaacattttaaagagccGTAATATTCACACTTTCATTTGCAAACAAAAGAGCTTAACTGAAGGCCTCCCATTCCTATAAAATAAGCAAAGAGTTACATCTTAATCGTCGAATGAGCTCGTTTGCATACCGATACATATGCATTAAGGACGAAAGGTTAAAACTGTTGTTATGTTTGCACACTTTTGGCTATGACCGTTTAAACAAAAGGCGAAACAAATGGCtcggagagaaaaaaaaaataaaaaaagcagctgTAGCACCTAAGCGTTATGTACACAATTCCATAATCCAAgtggagacaaaaaaaaaaaaaaaaagaactaaaaagtTAGAAAACTAAGCATTTCGGCAGGTGTCCATATCTGAGACCGTGGAGGCTGCAAAGCCTTCTCTCATTGGTGAGGGATGATCGGAGCTCAACTCCATGTCCAGAGTGAGAGATTCTGCAGGGAAAAGGCACTCACAGTATTAGGAGACCCTAAAACGTCTGCAATGGATATTGAGAAAGTTGTTTTGTGACTTACCCAGCGGTCCCGGGTTGGCCTCGGCGGCTTCATTGTGCATGAGAGAGTCGAGCGTACGAGGAGACATTGGGAACAAATCGCTGGTGTTGCCAGAGTTAGTCCTGGGAAAGAAAGAAGGCCCACGTCAGACCAGCTTCACACACGATCGTTAGGATTTAGTAAGATGACGGTTCATTCGCCAAGTAACGAGTAAACCTTTACTGTAATATTTGCACATTCCCGCACTCATCATACACATAAGGGGCATCACTTGGGAAATTAAAAAGATAGCacaccccaaaatgaaacttctgtccttatggcattcaaaacctgtatgactttctttctacCGTGTGACATAAAAGATCTTGTCCCCTTTATAGGCAAGTCAAAGATCTCCAATATCATCAGAGGTTTGGAGCCACATGAGGggagtatattattattattattattataaacttgGGACGTCCGAAGCGCAACTGAGCCATATGTAGATCATGAGgggagtaaattatgacagaagtTTGATTCTGGGGTGAACTCTCCCAGAGAACCGTTCTGGTCAGGTGTTAGAGGATGTTGAAACAGCAGATTCAACACAGTGCACTGAACATGTATATTACTACGTAGCTGacatgcatgaatgtaaatgtaactttGAAATGTAGCTGAAATCTAACTTTTTCCCTTTTCAATGACCTGAGCTGTAAATGCTATGATCGATCAATTTATATTACAGTGTGGAAAACACCactattgtaataaaattacattcataTGTAAATACTTTGTGAGAACACACAGCTACTTTTGAATGGCATTAATGTAGAAACATGCTGACATGCACTTATATCTGACCCAGTCAATTGCTTTCTGCTTGGCTGCCCATTAGTTTAACCCTGGGGAATGATTTACTAGGGGTCAAACTTTGCCTGTGCCTGTTTGTTAACACTCCAAACCACTCATGGGcagtttttcttgtttgtttagaGGAGCTGAAGTCTAGATCAAGCCTAGACTGCTTTGTCGATCATGTCTAATGCGTCAGGTTGCtggtaaattaaatcaagctttgtttattttttctttttaatagaattaataGCTCAATGCGTATTTATTTGCGGTCTAGACAAGATTTCCAACAAAGAcaatactaaaacattttttttccctgtaattttagtttgtttagcGTAAATCAGAACAATAGAGGGATGAACTGCATGTTAAGACGCAGGCTGCCCAAGAACAACATCATCAATCTTAAAAGCCACATTTGGCACATATCGTATTGAAAAGAGTCATATTCTGTTTATCTTTGCAGTATGAGGAATGGTACAAGCTGTTAGGAAGCTGGTGTAAGCAGTTTTCCTGAAACACTTTCTTATGCCAACATTACCAGGACCAATCTGGAGAACTCACTAAGCCCTTTGATAAGACTTCCAAAAAAAGTTGAAGCCAAGAACTTATTTTCCATCCTGGATCACCAAAAGTCCCGACTACCTTCCAAAATCTCAAGCAAAAGCTGGATGAGATGGGTACTCAATCATTGGGAAAGTATATCTCCAATTTTTACACTACATTTGTTCAGATTTTAGCTGGTTCTAGCTGATTAAACAGCTGCGGAAAGTTACTACAAGTACAGATCAAGTAAAGGTGTCATTTGTCTTAAGATGTGAATGAATTCTGAATACTGAGCACTAAAGTGTGCAGAAAATATTCTTGATGGTGTTGGTTAGCATGGTCCAGTTAGTTAATCCACAAACTACACCGTTAGCAGAAAGCATCTCTTTCCATTTACAGACAGCCATTCAGAAGAAGCAGTGTATTCTcatacattttctgtatttttggtcTTATGCCAAAAGATCCATGGGTAATATAGACTTCtaattgaaaaaatacagtGTGCTGTGTATAAACAGTGAAAACAGTTAAAGAGTGGATGAAGTCGTTAGTTTGGTCGTTGGTCAGTTTTCTCGTCTCCCTTATCTTACCTCATCTAGGTTATGAAACACCCAGAATGCCCTGAAGACAACGTCTAAACATCTATAAATAATGCAACTAAAACCATTGTATTGTTGTCATTAGTGCTACGgttaatgctgttgttttgttgataaaatcaaaatcactgattgtacatttatataacGGAAACTGCATTATGTAATTATCATTTCTAACAGGTGATACCATTTATACTACTTAATGCTGTTTTATGCTTTCGTATTTGTTGTAAATGAGAGATATGCtgaaatttggttgaaatagcGTTTATCATATTTGTGATTCAAGTTCCTATAGAAACGGTTTACTTACCCCAATCATAATAAGGGTAACACACGAGATTCAGTTTTCATCAGAAACTATTTCCTCCACATTGTTTAAAACACAGAGGAAGCAAACCATTTATATaccacataaaacaaaacttctATATGGgggcaaaaagagagaaagaaacgaATAGGAGAGAGAAGGCAACCCCTTCCTTTCCaaagtgtgaaaatatattGCACACCGATACAGAAAAGATAGCTTGTGAGCTTAGAAATGAAGTAGAAACCGCAAAAATATCCCCTTGTCTACAGAGGAACTAGTTCACCGACACAAAGTAGATAGTATTTAGACAGCAGTTGTAACTTTTATAGTTTCAGTGAAATGAAGTTTCAGTGACATCCAGACCTAGCTATAAAGAGATGAAGTGAGTAAACAGACACCCTTGGTCAAGCTCCAGAGATGTTAAAAGGAATAATCTATGTTAGCAGACGCCTACAGGAGTACGTTTGACCACAAGCGTTCATGTCTCATTCACGCACATAAAGCAGCTCCCTAATGCCTACCCAGGGAAGCCGTTCCCAAGCAGCTCACTGTCCGGGAAGTCCATGAAGACGGAAGGACACCTATGAAGAGAGGTCAGTTTATAGCCTGCCTAACACAGACACGCACGCACGCTAAAGCTCACATACATGACCTTTAGTACGTCCAAGTCCTCTACAAACACAGAAAGCATTCGTGATTCAAGCAGGACTGAGTTTGAAGCAGCTTTTATTccatccaaatgtttttttgtagcCAGGCTTGTTACCGAACGTACAGTAATTGTCATGTACAGTTTATTATATACTACGTTGAGTAACACGATATAGTACCACAATGTAAAACTGACTCATTAAATCAACATAAACATTCAAGATCAAGCAGTATTTAGATCGACCACGACAAACAGAAATTAACAAGACAAACAATATGTGGAATAACGTGGAACGACTGTCCATTAATTGTGCAAATCATCATTTAGAAAACATATTACGgaaaactgtacattttcacttttatgtggaacttttaaaaataaattagcaaaaatttaagatttttaaaattacatttacatatttcacttcattttttaaaactaaactaagagctgaaaatcacagtgtcaaaGTGTTTACACAATGGTTACCCACAaggcatgtgtgtatatacatgtaaattaaCCCTGAGCTTCCTTTTGTTGATCGTGTGCaaggcttatttaaaaaaaaatcaaaaattatcTCTCTTCTTGTGCAAGATTATGGTTTAAAGGATGTTGTGAAGAGTCCTTGGTGGCTACATCCCTGATCCATGTTGTAAAGAGAACTGAGAGGAGTACTTTGCATGTGCTCCTGCCTAAAGAGTCACCAGAAATGTCAAAGTTTAcaagagaacagagagagaaaacagagacTCCAGCAAGGTCcagcattcacacacatactagataaaaacgaaaaaaaaagctactcACGGTGTCACACAGATGAACTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31989 False 1360 lncRNA 0.35 2 19791526 19792919
TU31991 False 1356 lncRNA 0.35 2 19791526 19792919
TU31992 False 1358 lncRNA 0.35 2 19791526 19792919
TU31997 True 5255 lncRNA 0.37 2 19791526 19796812

Neighbor

gene id symbol gene type direction distance location
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding upstream 280019 19509088 ~ 19511507 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding upstream 337211 19451411 ~ 19454315 (+)
hsd17b1 hsd17b1 coding upstream 341864 19447171 ~ 19449662 (+)
LOC122341749 LOC107687002 coding upstream 345629 19443220 ~ 19445897 (+)
rabep2 LOC107690284,LOC107567756,LOC107755579,LOC107729174,LOC107687001 coding upstream 373635 19409591 ~ 19417891 (+)
aspdh aspdh,LOC107754162,LOC107731187 coding downstream 120858 19917670 ~ 19921271 (+)
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding downstream 133921 19930733 ~ 19941580 (+)
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding downstream 190694 19987506 ~ 19998472 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding downstream 201681 19998493 ~ 19999588 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding downstream 213321 20010133 ~ 20021740 (+)
G21540 NA non-coding upstream 745 19790578 ~ 19790781 (+)
G21539 NA non-coding upstream 1661 19789646 ~ 19789865 (+)
G21295 NA non-coding upstream 168237 19551613 ~ 19623289 (+)
G21277 NA non-coding upstream 299903 19491155 ~ 19491623 (+)
G21276 NA non-coding upstream 300931 19490129 ~ 19490595 (+)
G21543 LOC107731003,LOC107653351,LOC107754129,LOC107690299 non-coding downstream 879 19797691 ~ 19841045 (+)
G21534 LOC107567606,LOC107690302,LOC107754145,LOC107730993,LOC107653370,LOC107560758 non-coding downstream 27909 19824721 ~ 19832447 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding downstream 76627 19873439 ~ 19876321 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding downstream 84570 19881382 ~ 19910683 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding downstream 131917 19928729 ~ 19951931 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 388350 19399408 ~ 19403176 (+)
G21213 NA other upstream 499185 19291445 ~ 19292341 (+)
G21202 NA other upstream 798292 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 915399 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 949766 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 267458 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 298039 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 388723 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 1085386 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1498890 21295702 ~ 21414286 (+)

Expression


Co-expression Network