G21586 (LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185)


Basic Information

Item Value
gene id G21586
gene name LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19928729 ~ 19951931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU32061
ttTGTACATTTAGTTAGTTTTATTGTACACGGGGAATGTTCACATATACAATTTGTAcacattttcaattatattatttgtattattatcattattacttcAGTGTTTCCTCCAAAgggaaaacatgtttttgttttgtttatattgtgCTGACAAGTCAAGTTACGTTTaggcaaataaaacaaagaaacaaatgaaaggTTCGGGAAATAAGcgcaaaaaattacaaaacacatGAAGCGGAATAACATCAAATTAAAGGGCAGAATCAGTTGGTCACTAATCGTCCTCTTTCAGTTTGCTAATACAGTTTTCTGATTGATTCCCTACGATCATATACTGAATGTCCTCTAAATGGACGCACATGATAAAATCTGCGCATGCTGAGAATGCAACCCATCGACTTCTCAGAATTTCGGCACTTACACCTTGCAATTCGCCTGgcattttctgtgtttgtgcgtgttGATATGTTATATTTGGACTCACGGCATCAGCATCAGCAGTAACAAAGTAATGGGATCAGTTGTCACGTATACCTTTCGGATGAAAGTGTctgcaaatgcataaatgtaaatgtaacgtGTAAAGGACTATGCATTTGCCTGGCAGTAATATCAGTAAACCTTCAGTGTGTAGATTGTAAATAGATTCATCCACAGATTTATTGaatgcgtgtgcatgtgtgtaagcTTGTGAAAACGTGTATACGTGAATAACGTAGCACATGGATGAAAACACGCTTGTGCACTGACCCAGTGATGAGGATGTAAGTCGTTTAAACTCGCACACATTCAGTCTATttgaataatgacagaattttcggTTTTGgtgactgtccctttaaggatTTTGTGTATAAGTGCACAAacttatgatcaaataaatatctTCACGTCCATAGATTTGCTTGAACCCCTTTACCATTTAAAGCACTGGATAAAACAAAAGGAACTGAGCACAATATGAAAacttacacatacacactcaccatgagcacacacacacacacacacacacacacagaatctcATACACTGTATACTCTTACACCACAACCATCAATACCGCTGTGTCAATTTAAGTGCATTACAGTGATTTTGGCAGGAAGCCtaaaatactgaatatataatTCACAGAGCACCACTGTATTCTCAATCTGAAACACAAAGGACTTCGCAtccacacacgcacaaacacacactgcagtgTGCCTGTTTATAGAACAATCATCACATAATCTGATCATCAGTTTGGAAACTCATTTGCTCTGTTGCTTATTCACACGctcacacattcactcactcactgtcTATTTAACTCTGTATTGATCTTAACCCTTTTAACTCTTAGATATAGACTCTTTCTTCTCACTATgtgagctctctctctccctctccgccatataaataattatttgtccCGACTGGTTGAACATATTCTTCTGTTTTATCCCAATCTGATACCCATCCAGCCCCAGCACCTCCTCCGTTCGGGCCACCAGCGTGGGGATTGTTTATAGCTCCGTACTGTCCTCCAGTCCTGTACAGCTCTTCCGTTTCATTGGCCAGTTCGTCCTCTCCCAGAATGCCACACTTCTCCTCGCTGGTATTCTCAGCATCCGCCCAGGGCTGCTTCTCACCTGATGCAAAGATCCCTAAAAGATCACACCCCCATAATGCACCAGTGAGGCAATGAGGAAGACGTACTGCCACTCTTCACGTGTCTACaagcaaaaatacataaataaagcGACGATACAAACCGGTTACCAGAAATCAGTTATTTGACATGTGATGGTTGTGTGCTATTAGTATGTACCTTATGTTTGGTCATGGCTCCAACTATGAGAGGACACACCATTCCTGACAAAGTTCCCACTCCATTGGAGATTCCCATCAGGATGCTAGCATAACGTGGAGCAATGTCAAGATGATTCACATTGAACCCTGAAAAGGAAAGAGGAACGCAATGTTCATACATGCATCTTAAAGTATCTAAAGCATCTTGCCTAAACCGCAGCTTTAATTcacactttatttcttttaatgtgactttacattttgtaattgtgactttatgcCTCACAATGTTCCACGattcatatttcacaatgtcactattatttttgattttattcatgttttatccGTATTTTCATCACATGAGTGCAGCCTTGACgaacataattaaaaacatgaaaatcttATAGAGGCAAGACTCAATGCTGGTAGTGAACACTGTGAAGTGAATTCTTAAGTGTGTTTTGTCTTTAATCTTTTCTTTTACAAACCTGAAATTGCAAATCCACTGAAACCAACCGCCAGTACAAGGAAAGAAATGGCTATTACTTTGGTATGTGAGAAACCAACAACCAAGAGTAGCGTGGCCTCCATCCCAaaccctaaaacacacacagacacacacaaccTTACAGTCTCTCGGATTCAACATACAAGGTTTCCTGAGGGTCGGAGTATACCTGTGCATGCTCTGATGCATCTGTCTCGGTGTTGTGCATGCGTGTATGTTGTGTGTGCAGATGACTGCCAGAGACTGAGTGTGTCATGCATTGATGCGTCAGTGATTATTGCCCCAGCTGCCATTGCAGGACCAGACAAAGCAAAAATAGGCAGATAATCTGACTCGCGTCTcacacaaatatacagtttCTGACTCTGCACATGCTCTGTTGATTAAAACGCACGTTGTGTGCTGGATTCTACGTTTacgacatttatttattaatttttctttccttcttatCTACATCTTACCTCCACAGTTCATGAGTTTACGGACATTCGTTGTGGTCATTATATTGTGTGTTCTCAGGTAGTCGGCGAGTTGTCCTCCAATTGGCACGATAATGGTCATCACTAAATGAGGAAGTGCCGAACACCTCCTCGAAGTAAGCGGGCTGGCTGATGAGGAGCAGGTAGAAGGTCCAGCTTCTGCAGAAGTTGGCCACGATGATGGCATACACTGGCATGGAGGTAAAGAAGTGCCGCCAGGGAGTTTTAAATTTCTGCAGGGTAGCGAAAAAAACAGAGGTCGAACATATCCAGAACAGTGCAGCACGCAGCAGTTAGAGAGATGAGAAACGAGAGAAGAGTTAGAGTATGTGCG
>TU32062
ctcacacacacacacacacacacacacacacacacacacacacacacacacacacagaatctcATACACTGTATACTCTTACACCACAACCATCAATACCGCTGTGTCAATTTAAGTGCATTACAGTGATTTTGGCAGGAAGCCtaaaatactgaatatataatTCACAGAGCACCACTGTATTCTCAATCTGAAACACAAAGGACTTCGCAtccacacacgcacaaacacacactgcagtgTGCCTGTTTATAGAACAATCATCACATAATCTGATCATCAGTTTGGAAACTCATTTGCTCTGTTGCTTATTCACACGctcacacattcactcactcactgtcTATTTAACTCTGTATTGATCTTAACCCTTTTAACTCTTAGATATAGACTCTTTCTTCTCACTATgtgagctctctctctccctctccgccatataaataattatttgtccCGACTGGTTGAACATATTCTTCTGTTTTATCCCAATCTGATACCCATCCAGCCCCAGCACCTCCTCCGTTCGGGCCACCAGCGTGGGGATTGTTTATAGCTCCGTACTGTCCTCCAGTCCTGTACAGCTCTTCCGTTTCATTGGCCAGTTCGTCCTCTCCCAGAATGCCACACTTCTCCTCGCTGGTATTCTCAGCATCCGCCCAGGGCTGCTTCTCACCTGATGCAAAGATCCCTAAAAGATCACACCCCCATAATGCACCAGTGAGGCAATGAGGAAGACGTACTGCCACTCTTCACGTGTCTACaagcaaaaatacataaataaagcGACGATACAAACCGGTTACCAGAAATCAGTTATTTGACATGTGATGGTTGTGTGCTATTAGTATGTACCTTATGTTTGGTCATGGCTCCAACTATGAGAGGACACACCATTCCTGACAAAGTTCCCACTCCATTGGAGATTCCCATCAGGATGCTAGCATAACGTGGAGCAATGTCAAGATGATTCACATTGAACCCTGAAAAGGAAAGAGGAACGCAATGTTCATACATGCATCTTAAAGTATCTAAAGCATCTTGCCTAAACCGCAGCTTTAATTcacactttatttcttttaatgtgactttacattttgtaattgtgactttatgcCTCACAATGTTCCACGattcatatttcacaatgtcactattatttttgattttattcatgttttatccGTATTTTCATCACATGAGTGCAGCCTTGACgaacataattaaaaacatgaaaatcttATAGAGGCAAGACTCAATGCTGGTAGTGAACACTGTGAAGTGAATTCTTAAGTGTGTTTTGTCTTTAATCTTTTCTTTTACAAACCTGAAATTGCAAATCCACTGAAACCAACCGCCAGTACAAGGAAAGAAATGGCTATTACTTTGGTATGTGAGAAACCAACAACCAAGAGTAGCGTGGCCTCCATCCCAaaccctaaaacacacacagacacacacaaccTTACAGTCTCTCGGATTCAACATACAAGGTTTCCTGAGGGTCGGAGTATACCTGTGCATGCTCTGATGCATCTGTCTCGGTGTTGTGCATGCGTGTATGTTGTGTGTGCAGATGACTGCCAGAGACTGAGTGTGTCATGCATTGATGCGTCAGTGATTATTGCCCCAGCTGCCATTGCAGGACCAGACAAAGCAAAAATAGGCAGATAATCTGACTCGCGTCTcacacaaatatacagtttCTGACTCTGCACATGCTCTGTTGATTAAAACGCACGTTGTGTGCTGGATTCTACGTTTacgacatttatttattaatttttctttccttcttatCTACATCTTACCTCCACAGTTCATGAGTTTACGGACATTCGTTGTGGTCATTATATTGTGTGTTCTCAGGTAGTCGGCGAGTTGTCCTCCAATTGGCACGATAATGGTCATCACTAAATGAGGAAGTGCAGACACCAGCCCCACCTGAGCAACAGAAGAGGGTTGACCAGGCCGGCGCTTTCACCGATGGCGTCCTCTATGTACTTCCTCTCCTCTGGTGAGATGGTTGGGTGGACAGCTGGACTCTCATAGGACACTAAAATCCAGAAGAGATACCAGAATATCCCAACACTCCCTGTGAGAAGAGAAAAGGATGATAAGAATTATTCATTATcagaaaaagtatatattatatattataaatacaataaagtatGAGTATATGGTCAGTTTTTG

Function

NR:

description
PREDICTED: vesicular glutamate transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32061 True 3129 lncRNA 0.41 3 19948081 19951634
TU32062 False 2193 lncRNA 0.42 4 19928729 19951931

Neighbor

gene id symbol gene type direction distance location
aspdh aspdh,LOC107754162,LOC107731187 coding upstream 7458 19917670 ~ 19921271 (+)
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding upstream 417222 19509088 ~ 19511507 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding upstream 474414 19451411 ~ 19454315 (+)
hsd17b1 hsd17b1 coding upstream 479067 19447171 ~ 19449662 (+)
LOC122341749 LOC107687002 coding upstream 482832 19443220 ~ 19445897 (+)
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding downstream 35575 19987506 ~ 19998472 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding downstream 46562 19998493 ~ 19999588 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding downstream 58202 20010133 ~ 20021740 (+)
LOC122341339 LOC107754194,LOC107568235 coding downstream 120013 20071944 ~ 20077001 (+)
LOC122341340 NA coding downstream 125071 20077002 ~ 20082045 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 18046 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 52408 19873439 ~ 19876321 (+)
G21543 LOC107731003,LOC107653351,LOC107754129,LOC107690299 non-coding upstream 87684 19797691 ~ 19841045 (+)
G21534 LOC107567606,LOC107690302,LOC107754145,LOC107730993,LOC107653370,LOC107560758 non-coding upstream 96282 19824721 ~ 19832447 (+)
G21541 NA non-coding upstream 131917 19791526 ~ 19796812 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding downstream 2145 19954076 ~ 19970419 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding downstream 208505 20160436 ~ 20161211 (+)
G21652 NA non-coding downstream 216705 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 221763 20173694 ~ 20185526 (+)
G21655 NA non-coding downstream 278084 20230015 ~ 20314144 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 525553 19399408 ~ 19403176 (+)
G21213 NA other upstream 636388 19291445 ~ 19292341 (+)
G21202 NA other upstream 935495 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 1052602 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 1086969 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 112339 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 142920 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 233604 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 930267 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1343771 21295702 ~ 21414286 (+)

Expression


Co-expression Network