LOC122341338 (LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937)


Basic Information

Item Value
gene id LOC122341338
gene name LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20064270 ~ 20069253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU32077
GAGACAGAGTGAAAACAGATTCACATCTGATGCATGCACAGAGAGAAGTTGAGTTGGTGAATCACTGTTTTGCTGATGTGGAGCATTTTATGGCCCGTCTGCAGGAGACAGCAGAAGCTAAGAACATTGTAGAGCAACAGatcattaaaaacagcaaagaagGATGATAAGaaaagcaagaagaagaaaaaacagtttGACGGCCCTCTCATACGAACGGTGATCCCACCATCAGAACAAGAGTTTGTGGATGTTCTTCAGAAGATTAAATATTCTTTCTGTCTACTGGATCGCCTGAAGACGAAAATCTCAGAACCAACCTCAGAACAACTCTTACACCATGTATTCATCCCATTGCAACTGCTCTCAACTTAGCGAGACAGTGCCTCAATACACACCTGTCTTTCTGGATGGCTGGCAGCCAATGGCCACAGATCCTCACGGACAGCCCTTCGAGGACCCCATAGAGTCCCAGCACAGACATGAAGCCCTCATGCAGACTCAACAGGTCATTGATCAGGCGCGTCTAGCTGTATACCAGGAACACGACGGGATGGAAGACTCCCTGCCTCCTCACGAAGAAAGGCTGTACCGTTGCAGTTATGACTTTGTGGCGAGAAACAGTAGTGAACTCTCAGTATTACATGGAGAAACCCTGGAGGTGTTAGAGTCATCAAAGAGATGGTGGAAATGTAAGAATGAATACGACCAAATTGGTTTCGTTCCACATAATATTCTCGAGCCAATCAATCACGCAGAAGTCGACTCTTCCAACGTAGTAATGCGCAACCAGTCTATGAAAGCTCCTATTCCTCCCCCGGGAGGAGGCAGAGCCTCGTGTGTTCTGCCCAATTCCACAGGCAAAAATGCTTTCCACCCTGATCCACGCCCCCACAGTATGCCACCAATTGGAGACGACGGAGATAaagtatttttgatgaatgatGAGCTCTTGCAACGACTGGCCAATGGTAAATCAGCATCGATACGCCCAGTGGTAATTAACAAAGCAAATGAGACCACCGCCCCGCTGGACTATCACTCCCCTCCAGCTGAGGTTCAGGG
>TU32078
cagcaccccaaaatgaataaaatgcaagtATTGGATTTAACTCAGCAAATATGACGCAGGGTGGTGTAGTATTATATTTCATGGAAAAGGAGTATTTTGCAAAGGTAAGGCTTTAACTAATAAAGATCGGTAAGTTGACTCCATTGTGTGTTTATCAGCTCTCAACTTAGCGAGACAGTGCCTCAATACACACCTGTCTTTCTGGATGGCTGGCAGCCAATGGCCACAGATCCTCACGGACAGCCCTTCGAGGACCCCATAGAGTCCCAGCACAGACATGAAGCCCTCATGCAGACTCAACAGGTCATTGATCAGGCGCGTCTAGCTGTATACCAGGAACACGACGGGATGGAAGACTCCCTGCCTCCTCACGAAGAAAGGCTGTACCGTTGCAGTTATGACTTTGTGGCGAGAAACAGTAGTGAACTCTCAGTATTACATGGAGAAACCCTGGAGGTGTTAGAGTCATCAAAGAGATGGTGGAAATGTAAGAATGAATACGACCAAATTGGTTTCGTTCCACATAATATTCTCGAGCCAATCAATCACGCAGAAGTCGACTCTTCCAACGTAGTAATGCGCAACCAGTCTATGAAAGCTCCTATTCCTCCCCCGGGAGGAGGCAGAGCCTCGTGTGTTCTGCCCAATTCCACAGGCAAAAATGCTTTCCACCCTGATCCACGCCCCCACAGTATGCCACCAATTGGAGACGACGGAGATAaagtatttttgatgaatgatGAGCTCTTGCAACGACTGGCCAATGGTAAATCAGCATCGATACGCCCAGTGGTAATTAACAAAGCAAATGAGACCACCGCCCCGCTGGACTATCACTCCCCTCCAGCTGAGGTTCAGGG
>TU32079
TAACTGGACTTATTGCTTAAaagcttacttttttttatatcccaCTCTTGTAGGAGTTGGTGAATCACTGTTTTGCTGATGTGGAGCATTTTATGGCCCGTCTGCAGGAGACAGCAGAAGCTAAGAACATTGTAGAGCAACAGatcattaaaaacagcaaagaagGATGATAAGaaaagcaagaagaagaaaaaacagtttGACGGCCCTCTCATACGAACGGTGATCCCACCATCAGAACAAGAGTTTGTGGATGTTCTTCAGAAGATTAAATATTCTTTCTGTCTACTGGATCGCCTGAAGACGAAAATCTCAGAACCAACCTCAGAACAACTCTTACACCATGTATTCATCCCATTGCAACTGATGGTAAAGACCACAGGTGGTCCTGAGTTGGCAGCAACAGTGTCCAGCCCCGCTATGACCAGTGGAGCAATCTCCCTACTACAGAAGAACCTTAATGAGCATGAGAAACCACTGTGGAAGTCACTC
>XM_043234689.1
ATGTATTGTAAATGGAGAGACAGAGTGAAAACAGATTCACATCTGATGCATGCACAGAGAGAAGTTGAGTTGGTGAATCACTGTTTTGCTGATGTGGAGCATTTTATGGCCCGTCTGCAGGAGACAGCAGAAGCTAAGAACATTGTAGAGCACAGatcattaaaaacagcaaagaagGATGATAAGaaaagcaagaagaagaaaaaacagtttGACGGCCCTCTCATACGAACGGTGATCCCACCATCAGAACAAGAGTTTGTGGATGTTCTTCAGAAGATTAAATATTCTTTCTGTCTACTGGATCGCCTGAAGACGAAAATCTCAGAACCAACCTCAGAACAACTCTTACACCATGTATTCATCCCATTGCAACTGATGGTAAAGACCACAGGTGGTCCTGAGTTGGCAGCAACAGTGTCCAGCCCCGCTATGACCAGTGGAGCAATCTCCCTACTACAGAAGAACCTTAATGAGCATGAGAAACCACTGTGGAAGTCACTCAGCCCAATGACCATGCCATACTCTCAACTTAGCGAGACAGTGCCTCAATACACACCTGTCTTTCTGGATGGCTGGCAGCCAATGGCCACAGATCCTCACGGACAGCCCTTCGAGGACCCCATAGAGTCCCAGCACAGACATGAAGCCCTCATGCAGACTCAACAGGTCATTGATCAGGCGCGTCTAGCTGTATACCAGGAACACGACGGGATGGAAGACTCCCTGCCTCCTCACGAAGAAAGGCTGTACCGTTGCAGTTATGACTTTGTGGCGAGAAACAGTAGTGAACTCTCAGTATTACATGGAGAAACCCTGGAGGTGTTAGAGTCATCAAAGAGATGGTGGAAATGTAAGAATGAATACGACCAAATTGGTTTCGTTCCACATAATATTCTCGAGCCAATCAATCACGCAGAAGTCGACTCTTCCAACGTAGTAATGCGCAACCAGTCTATGAAAGCTCCTATTCCTCCCCCGGGAGGAGGCAGAGCCTCGTGTGTTCTGCCCAATTCCACAGGCAAAAATGCTTTCCACCCTGATCCACGCCCCCACAGTATGCCACCAATTGGAGACGACGGAGATAaagtatttttgatgaatgatGAGCTCTTGCAACGACTGGCCAATGGTAAATCAGCATCGATACGCCCAGTGGTAATTAACAAAGCAAATGAGACCACCGCCCCGCTGGACTATCACTCCCCTCCAGCTGAGGTTCAGGGGTGGCTCAGTGCCAAAGGCTTCCATGATTACACTGTACAGAGTCTCGGTGTCCTAACGGGAGCCCAGCTCTTCTCTCTGAATAAGGATGAGCTGCGTGCCGTTTGTCCAGAAGAGGGAACCAGAGTCTACAGTCAGATCATGGTGCAGAAAGCACTGCTGGAGGATAAGAGGAAGGCCACTGAGTTGGAGGCCAtaatgaagaaacagaagatgaAAGTTGATCTGAAAGCAGAGGGTGGAGAATTTTAACGGATATCACTTTCACTCACACATTCAGACAAGCATTTATGCTAAAGCTTTAACAGACAGGTGTGGCATGAATTAAGATCTATTTAACCAtaatatttgcttgttttatgtCATTGCTAATAAATATGGATCATTACCACTCATCATTTGGAAATCAAACCTGTATATTCCTTTATGTATTCtattttaactataaataaaataaaataaaatactgcttgtatttata

Function

NR:

description
PREDICTED: epidermal growth factor receptor kinase substrate 8-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32077 False 1065 TUCP 0.47 10 20064490 20068001
TU32078 False 860 TUCP 0.48 6 20066130 20068001
TU32079 False 492 lncRNA 0.43 4 20064960 20065876
XM_043234689.1 True 1705 mRNA 0.45 17 20064270 20069253

Neighbor

gene id symbol gene type direction distance location
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding upstream 42530 20010133 ~ 20021740 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding upstream 64682 19998493 ~ 19999588 (+)
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding upstream 65798 19987506 ~ 19998472 (+)
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding upstream 122690 19930733 ~ 19941580 (+)
aspdh aspdh,LOC107754162,LOC107731187 coding upstream 142999 19917670 ~ 19921271 (+)
LOC122341339 LOC107754194,LOC107568235 coding downstream 2691 20071944 ~ 20077001 (+)
LOC122341340 NA coding downstream 7749 20077002 ~ 20082045 (+)
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding downstream 79261 20148514 ~ 20160181 (+)
gjc1 LOC107653474,LOC107731105,LOC107570945,LOC107567456,LOC107754260,LOC107690314,LOC564307 coding downstream 132023 20201276 ~ 20229670 (+)
bckdhbl LOC107731123,LOC107689045 coding downstream 178823 20248076 ~ 20251489 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 93851 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 112339 19928729 ~ 19951931 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 153587 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 187949 19873439 ~ 19876321 (+)
G21543 LOC107731003,LOC107653351,LOC107754129,LOC107690299 non-coding upstream 223225 19797691 ~ 19841045 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding downstream 91183 20160436 ~ 20161211 (+)
G21652 NA non-coding downstream 99383 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 104441 20173694 ~ 20185526 (+)
G21655 NA non-coding downstream 160762 20230015 ~ 20314144 (+)
G21660 NA non-coding downstream 270638 20339891 ~ 20345356 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 661094 19399408 ~ 19403176 (+)
G21213 NA other upstream 771929 19291445 ~ 19292341 (+)
G21202 NA other upstream 1071036 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 1188143 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 1222510 18828665 ~ 18841760 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 25598 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 116282 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 812945 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1226449 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1568490 21637743 ~ 21734127 (+)

Expression


Co-expression Network