LOC122341550 (LOC107754194,LOC107690309,LOC107568235)


Basic Information

Item Value
gene id LOC122341550
gene name LOC107754194,LOC107690309,LOC107568235
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20160436 ~ 20161211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU32162
gtattttaaagaaCTAAACTCTGAGCTGGTTGCTTCAGAAGTCAAAACTCAAAGTGACTTAAATAAACTAAGGATGGCGCCAGCAAGACAACACAGTTTAAAATACGATCTGATGAAATCCAGGAGCAACCCAGACTTCCCAAAGGACCATGCTACTCTTACGCAGACCGTCAGATCCAAGAGTCTTAAAGATGGACTCACAGTTCAGGAGAGGATGAAGCTTTTTGAATTAACCAGCACGCAAAAGAtttgactctgtgtgtgtgcgtctgtgtgatagagagagagaaagataagcattttaaagtattacgtgggttaaattatttaattgtatatctTTATAACACAATGAATTCTAACTATACCTTTAgtcactggtgtgtgtgtgtgtgaccgagagagagcgagcctatgtcagtcattttaattgtttgttattgctttaGATGGTAGAATTAATTTTTGATATGACGTTGTCTCTCTAAATCTTAAActgtctttgtttatatttacatgtttatgcCCGAATGAGCATCCATTCAATTTGCTTCATCTCTAATTATGAATAAAGTCAAGCTTTT
>XR_006250469.1
gtattttaaagaaCTAAACTCTGAGCTGGTTGCTTCAGAAGTCAAAACTCAAAGTGACTTAAATAAACTAAGGATGGCGCCAGCAAGACAACACAGTTTAAAATACGATCTGATGAAATCCAGGAGCAACCCAGACTTCCCAAAGGACCATGCTACTCTTACGCAGACCGTCAGATCCAAGAGTCTTAAAGATGGACTCACAGTTCAGGAGAGGATGAAGCTTTTTGAATTAACCAGCACGCAAAAGAtttgactctgtgtgtgtgcgtctgtgtgatagagagagagaaagataagcattttaaagtattacgtgggttaaattatttaattgtatatctTTATAACACAATGAATTCTAACTATACCTTTAgtcactggtgtgtgtgtgtgtgaccgagagagagcgagcctatgtcagtcattttaattgtttgttattgctttaGATGGTAGAATTAATTTTTGATATGACGTTGTCTCTCTAAATCTTAAActgtctttgtttatatttacatgtttatgcCCGAATGAGCATCCATTCAATTTGCTTCATCTCTAATTATGAATAAAGTCAAGCTTTTCCAATC

Function

NR:

description
PREDICTED: myosin-11-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32162 False 584 lncRNA 0.36 3 20160436 20161205
XR_006250469.1 True 590 lncRNA 0.36 3 20160436 20161211

Neighbor

gene id symbol gene type direction distance location
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding upstream 255 20148514 ~ 20160181 (+)
LOC122341340 NA coding upstream 78391 20077002 ~ 20082045 (+)
LOC122341339 LOC107754194,LOC107568235 coding upstream 83435 20071944 ~ 20077001 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding upstream 138696 20010133 ~ 20021740 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding upstream 160848 19998493 ~ 19999588 (+)
gjc1 LOC107653474,LOC107731105,LOC107570945,LOC107567456,LOC107754260,LOC107690314,LOC564307 coding downstream 40065 20201276 ~ 20229670 (+)
bckdhbl LOC107731123,LOC107689045 coding downstream 86865 20248076 ~ 20251489 (+)
cacnb1 cacnb1,LOC106607253,LOC108413880,LOC107670911,LOC107689043,LOC107552492 coding downstream 93613 20254824 ~ 20284900 (+)
arl5c arl5c,LOC107670909,LOC107754318,LOC107567387,LOC107745936,LOC107689047,LOC108260527 coding downstream 125952 20287163 ~ 20290477 (+)
lasp1 LOC107754308,LOC107745925,LOC107552489,LOC107689048,LOC107567378,LOC108413872,LOC108258608,LOC107670908 coding downstream 135261 20296472 ~ 20309460 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 190017 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 208505 19928729 ~ 19951931 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 249753 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 284115 19873439 ~ 19876321 (+)
G21543 LOC107731003,LOC107653351,LOC107754129,LOC107690299 non-coding upstream 319391 19797691 ~ 19841045 (+)
G21652 NA non-coding downstream 7425 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 12483 20173694 ~ 20185526 (+)
G21655 NA non-coding downstream 68804 20230015 ~ 20314144 (+)
G21660 NA non-coding downstream 178680 20339891 ~ 20345356 (+)
G21661 NA non-coding downstream 179861 20341072 ~ 20342296 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 46938 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 91183 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 757260 19399408 ~ 19403176 (+)
G21213 NA other upstream 868095 19291445 ~ 19292341 (+)
G21202 NA other upstream 1167202 18991458 ~ 18993234 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 24324 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 720987 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1134491 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1476532 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1814041 21975252 ~ 21976665 (+)

Expression


Co-expression Network