eftud2 (eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997)


Basic Information

Item Value
gene id eftud2
gene name eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20185535 ~ 20195721 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU32173
TCTGAGAGAGGACCTCGCGGTGCATGGTTTGGAAACAGTACGCGGGataactttaaaacaataataaaatccCCCAGGCGTAAAGAGTCGCACACAGAGCTCATCAGCATGGAGACAGATCTTTATGATGAGTTCGGAAACTATATTGGACCAGAGCTGGACTctgatgaagatgaggaagtAGACGCAGATGACCGGGAGGCTGATGAGGCAGATGAGGAGGATGACGATGAAGACCAGGCTGAGGCGGATGAGGAGGATGGTGGCGGTATGGAGGTGGTTCTGCATGAGGATAAAAAGTATTATCCTACAGCTGAGGAAGTTTATGGTCCTGAGGTGGAGACTATCGTCCAAGAAGAAGATACGCAACCACTGACAGAGCCCATCATAAAACCGGTGAAGATGAAGCGGTTTACTCTGATGGAGCAAGAGCTTCCTGTCACCGTCTACGACATGGAGTTCCTTGCTGATTTGATGGACAGCTCAGAACTGATCAGAAATGTCACCTTGTGTGGGCACTTACACCATGGCAAGACTTGCTTTGTGGACTGCCTCATTGAACAGACGCATCCTGAAATCCGCAAGAGAGATGACTCTGAC
>TU32181
GGGCAAATCTTACCTTTTTAACATCATGGACACGCCAGGTCATGTGAACTTCTCTGATGAGGTGACATCAGCAGTCAGACTGTCTGACGGCATTGTGCTTTTTATCGATGCTGCCGAGGGGGTGATGCTAAACACTGAGCGGCTGATTAAGCATGCAGTGCAGGAGAAGTTGGCCATCACTATCTGTATTAATAAAGTGGATCGTCTGATCGTGGAGCTCAAGCTACCCCCTACTGATGCATACTACAAACTGCGCCACATCGTGGATGAGGTCAACGGC
>XM_043235916.1
TGATGACGTCACCAACGTACGACATACGTTGCTCTGAGAGAGGACCTCGCGGTGCATGGTTTGGAAACAGTACGCGGGataactttaaaacaataataaaatccCCCAGGCGTAAAGAGTCGCACACAGAGCTCATCAGCATGGAGACAGATCTTTATGATGAGTTCGGAAACTATATTGGACCAGAGCTGGACTctgatgaagatgaggaagtAGACGCAGATGACCGGGAGGCTGATGAGGCAGATGAGGAGGATGACGATGAAGACCAGGCTGAGGCGGATGAGGAGGATGGTGGCGGTATGGAGGTGGTTCTGCATGAGGATAAAAAGTATTATCCTACAGCTGAGGAAGTTTATGGTCCTGAGGTGGAGACTATCGTCCAAGAAGAAGATACGCAACCACTGACAGAGCCCATCATAAAACCGGTGAAGATGAAGCGGTTTACTCTGATGGAGCAAGAGCTTCCTGTCACCGTCTACGACATGGAGTTCCTTGCTGATTTGATGGACAGCTCAGAACTGATCAGAAATGTCACCTTGTGTGGGCACTTACACCATGGCAAGACTTGCTTTGTGGACTGCCTCATTGAACAGACGCATCCTGAAATCCGCAAGAGAGATGACTCTGACGTGAGTATATatTCACGATACACAGATATCCTCTTCACAGAGCAAGAGAGGGGAGTTGGTATCAAGAGTACACCTGTAACCATGGTTCTGCCTGACTCGGGCAAATCTTACCTTTTTAACATCATGGACACGCCAGGTCATGTGAACTTCTCTGATGAGGTGACATCAGCAGTCAGACTGTCTGACGGCATTGTGCTTTTTATCGATGCTGCCGAGGGGGTGATGCTAAACACTGAGCGGCTGATTAAGCATGCAGTGCAGGAGAAGTTGGCCATCACTATCTGTATTAATAAAGTGGATCGTCTGATCGTGGAGCTCAAGCTACCCCCTACTGATGCATACTACAAACTGCGCCACATCGTGGATGAGGTCAACGGCTTGCTGAGCACGTACTCCACCGATGAGTCTCTGATTGTCTCTCCGTTGGGAAACGTGTGTTTCGCTTCCTCACAATACAGCATCTGCTTCACTCTCGGCTCCTTTGCCAAAATCTATTCAGACACCTACGGTGACATCAACTACATGGAGTTTGCTAAAAGACTGTGGGGAGACATTTACTTCAACCCTAAAACGAGGAAGTTTACTGAAAAGGCCCCCAACAGCAATTCTCAGCGAAGCTTTGTTGAGTTCGTACTAGAGCCGCTGTACAAGATTCTTTCACAGGTGGTGGGGGATGTGGACACATCTCTGCCTCGTGTGTTGGATGAGCTCGGCATTCATCTGACTAAAGAGGAATTAAAGCTCAACATCAGACCTCTTCTGCGCCTTGTCTGCAACCGCTTCTTTGGAGAGTTTACAGGCTTTGTGGACATGTGCGTGCAACACATACCATCTCCTCAGGGAGGTGCCAAAGCTAAGATAGAGCACAGCTACACGGGCGGACTGGACTCGGACCTTGGAGAGACGATGTCTGAGTGTGACCCTGATGGTCCACTGATGTGTCACACCACTAAGATGTACAGCACAGATGACGGCGTGCAGTTCCACGCGTTCGGTCGAGTCCTGAGCGGGACCCTGCAGGCGGGCCAGCCTGTGAAGGTTCTAGGAGAGAACTACAGCctggaggacgaggaggacTCTCAGATCTGCACTGTCGGACGCCTGTGGATTTCTGTTGCTAGGTATCAGATTGAAGTGAATCGTGTCCCTGCTGGAAACTGGGTGTTGATCGAAGGGTGCGACCAGCCTATTGTTAAAACGGCCACAATCACAGAACCCCGTGGAAATGAAGAGGCTCAGATCTTCAGACCACTGAAGTTTAACACAGCGTCGGTGATAAAGATCGCTGTAGAGCCAGTCAATCCCTCAGAACTGCCCAAAATGTTGGATGGACTCAGAAAAGTCAACAAAAGTTATCCATCACTTACAACAAAGgtggaGGAGTCCGGTGAACACGTGATTCTTGGTACAGGTGAGCTGTACCTGGACTGTGTGATGCACGACCTGCGCAAGATGTACTCTGAGATTGACATCAAGGTGGCTGATCCAGTGGTGACCTTCTGTGAGACTGTGGTAGAGACGTCCTCTCTGAAGTGTTTTGCTGAAACGCCCAATAAAAAGAATAAGATTACCATGATTGCGGAGCCGTTGGAGAAGGGTCTAGCTGAAGACATTGAGAATGAGGTGGTGCAGATCACGTGGAACAGGAAAAAGTTGGGAGAGTTCTTCCAGACGAAGTATGACTGGGATTTGCTGGCGGCTCGTTCTATTTGGGCCTTTGGACCTGACACAACTGGGCCCAACATTTTAGTAGACGACACTTTGCCCTCTGAGGTAGATAAAGCTCTTCTCGGCTCAGTGAAGGACAGTATTGTGCAGGGCTTCCAGTGGGGAACACGCGAGGGTCCTTTGTGTGATGAACCAATCCGCAACGTGAAGTTTAAGATCCTGGACGCGGTGATCGCACAGGAACCGCTGCACAGAGGAGGAGGACAGGTCATCCCTACAGCTCGCAGAGTCGTCTACTCTGCCTTCCTGATGGCCACGCCCAGGCTGATGGAGCCCTATTACTTTGTGGAGGTTCAGGCCCCTGCTGACTGTGTTTCTGCTGTGTACACGGTGCTGGCACGCAGGAGAGGTCATGTGACGCAGGATGCGCCAATCCCTGGCTCTCCTCTCTACACCATCAAGGCTTTCATTCCCGCTATTGACTCGTTTGGCTTTGAAACCGAtctccgcacacacacgcagggcCAGGCCTTCGCTACCAGTGTGTTCCACCACTGGCAGATTGTTCCCGGTGATCCTCTGGATAAGAGCATTGTGATTCGTCCTCTAGAGCCTCAGCCGGCCCCTCATTTGGCCAGAGAGTTTATGATCAAAACCAGCAGGCGCAAAgGTTTGAGCGAGGACGTCAGTATCAGCAAGTTCTTCGATGACCCTATGTTGTTGGAGCTGGCCAAACAAGACGTGGTGCTCAATTACCCGATGTGATGCGACAAATGAACTTAACTCATCCCATCATTCCCCTTCAGCTTCACCAGACTTGCCCGTACTACAAATCAATCCAGTTCTGtatgatgaaattaaaaaaatgtctttttttttatgcaaagcgCTAGAAACATCCACACGATTACTCTTGCCGTTGTCACAGACTTTCCTGAATTAACCTCTGGCCTCAAGGAGCTcctttataattttgttttttgtttatttttatatttgacaaGTGTTTTGTAGTATATAAGATAATGTAATTCACAGTCAAGTCTGTTTGAAACGTGTCtgaaatctctttttttaaatcttaagaggtttttgattaaaaagctTTGACCTGTGGATCTTAA

Function

symbol description
eftud2 Predicted to enable GTPase activity and U5 snRNA binding activity. Acts upstream of or within several processes, including camera-type eye development; mRNA splicing, via spliceosome; and regulation of neuron differentiation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 2 spliceosome and U4/U6 x U5 tri-snRNP complex. Predicted to be active in cytosol. Is expressed in head; immature eye; and nervous system. Used to study Treacher Collins syndrome and mandibulofacial dysostosis, Guion-Almeida type. Human ortholog(s) of this gene implicated in esophageal atresia and mandibulofacial dysostosis, Guion-Almeida type. Orthologous to human EFTUD2 (elongation factor Tu GTP binding domain containing 2).

NR:

description
PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12852 EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component

RNA

RNA id representative length rna type GC content exon number start site end site
TU32173 False 600 TUCP 0.49 6 20185567 20187198
TU32181 False 280 TUCP 0.49 3 20187528 20188083
XM_043235916.1 True 3424 mRNA 0.49 31 20185535 20195721

Neighbor

gene id symbol gene type direction distance location
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding upstream 25354 20148514 ~ 20160181 (+)
LOC122341340 NA coding upstream 103490 20077002 ~ 20082045 (+)
LOC122341339 LOC107754194,LOC107568235 coding upstream 108534 20071944 ~ 20077001 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding upstream 163795 20010133 ~ 20021740 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding upstream 185947 19998493 ~ 19999588 (+)
gjc1 LOC107653474,LOC107731105,LOC107570945,LOC107567456,LOC107754260,LOC107690314,LOC564307 coding downstream 5555 20201276 ~ 20229670 (+)
bckdhbl LOC107731123,LOC107689045 coding downstream 52355 20248076 ~ 20251489 (+)
cacnb1 cacnb1,LOC106607253,LOC108413880,LOC107670911,LOC107689043,LOC107552492 coding downstream 59103 20254824 ~ 20284900 (+)
arl5c arl5c,LOC107670909,LOC107754318,LOC107567387,LOC107745936,LOC107689047,LOC108260527 coding downstream 91442 20287163 ~ 20290477 (+)
lasp1 LOC107754308,LOC107745925,LOC107552489,LOC107689048,LOC107567378,LOC108413872,LOC108258608,LOC107670908 coding downstream 100751 20296472 ~ 20309460 (+)
LOC122342124 NA non-coding upstream 9 20173694 ~ 20185526 (+)
G21652 NA non-coding upstream 12533 20168636 ~ 20173002 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding upstream 24324 20160436 ~ 20161211 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 215116 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 233604 19928729 ~ 19951931 (+)
G21655 NA non-coding downstream 34294 20230015 ~ 20314144 (+)
G21660 NA non-coding downstream 144170 20339891 ~ 20345356 (+)
G21661 NA non-coding downstream 145351 20341072 ~ 20342296 (+)
G21669 NA non-coding downstream 197840 20393561 ~ 20393901 (+)
G21671 NA non-coding downstream 212071 20407792 ~ 20408327 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 72037 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 116282 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 782359 19399408 ~ 19403176 (+)
G21213 NA other upstream 893194 19291445 ~ 19292341 (+)
G21202 NA other upstream 1192301 18991458 ~ 18993234 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 686477 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1099981 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1442022 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1779531 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1780788 21976509 ~ 22025911 (+)

Expression


Co-expression Network