G21655


Basic Information

Item Value
gene id G21655
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20230015 ~ 20314144 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU32184
TCGACCGGCCCCGTTCACCGCCGGCTGCGTCTTTCTAGAAGAGCGGAGCGCAGCGGGCGGGGAGGGTCTCCAGAGCAGCGGACGCAGCCGACACCGACACCGAGCATCCTGCGCATCTTCTGGAGCCGTCATGCTGGATGTGCTGCTGTTGATGTTCTTCGCCATCATCGGCCTTGTGTTCCTGTCCTACATCATCTACATGCTCTGATCCCGGCGGCAGCGATGCGCCGCCGCGAGAGCGGGCGCGCGACGCACGCGGAGGAAGAAGCTCTGTCGATGGGGTCATGGCGTGAACGGACTGCAGGACGCGGGATATAGCTACATTTACAAGAGGAGACTTCACCCACCTCTGTGTCACACAAACACTGTCCCTATAGCATAGCagctgacacaaacacacacccatgTACTTGAAGTCAAGTATATACTAAACCACAAGATGGGCTGTTATTCgtctttttctgttcttctgtgtttttgtaagtAACTGTTTACAAGCTCCCGGTGTAATGGGCACTGTTATCACGTTCATGTATTTTGTCCAAGGATGTTCtgattttgaaaataaagagcCTTTGCGAGGATGAAACTGCC
>TU32185
CTTAAAAGGGTCCGACACCGACACCGAGCATCCTGCGCATCTTCTGGAGCCGTCATGCTGGATGTGCTGCTGTTGATGTTCTTCGCCATCATCGGCCTTGTGTTCCTGTCCTACATCATCTACATGCTCTGATCCCGGCGGCAGCGATGCGCCGCCGCGAGAGCGGGCGCGCGACGCACGCGGAGGAAGAAGCTCTGTCGATGGGGTCATGGCGTGAACGGACTGCAGGACGCGGGATATAGCTACATTTACAAGAGGAGACTTCACCCACCTCTGTGTCACACAAACACTGTCCCTATAGCATAGCagctgacacaaacacacacccatgTACTTGAAGTCAAGTATATACTAAACCACAAGATGGGCTGTTATTCgtctttttctgttcttctgtgtttttgtaagtAACTGTTTACAAGCTCCCGGTGTAATGGGCACTGTTATCACGTTCATGTATTTTGTCCAAGGATGTTCtgattttgaaaataaagagcCTTTGCGAGGATGAAACTGCC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32184 True 594 lncRNA 0.54 2 20313295 20314144
TU32185 False 518 lncRNA 0.50 3 20230015 20314144

Neighbor

gene id symbol gene type direction distance location
gjc1 LOC107653474,LOC107731105,LOC107570945,LOC107567456,LOC107754260,LOC107690314,LOC564307 coding upstream 345 20201276 ~ 20229670 (+)
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding upstream 69834 20148514 ~ 20160181 (+)
LOC122341340 NA coding upstream 147970 20077002 ~ 20082045 (+)
LOC122341339 LOC107754194,LOC107568235 coding upstream 153014 20071944 ~ 20077001 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding upstream 208275 20010133 ~ 20021740 (+)
trnac-gca_3 NA coding downstream 116 20314260 ~ 20314331 (+)
atp6v0ca LOC107754334,LOC107567372,LOC107552490,LOC107745898 coding downstream 2174 20316318 ~ 20320290 (+)
spsb3a spsb3a,spsb3,LOC107689049,LOC107670907,LOC107745892,LOC107754412 coding downstream 7801 20321945 ~ 20327552 (+)
mrps34 mrps34,LOC107567325 coding downstream 14012 20328156 ~ 20331230 (+)
nme3 nme3,LOC107661191,LOC107689099,LOC107567334 coding downstream 17190 20331334 ~ 20334050 (+)
LOC122342124 NA non-coding upstream 44489 20173694 ~ 20185526 (+)
G21652 NA non-coding upstream 57013 20168636 ~ 20173002 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding upstream 68804 20160436 ~ 20161211 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 259596 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 278084 19928729 ~ 19951931 (+)
G21660 NA non-coding downstream 25747 20339891 ~ 20345356 (+)
G21661 NA non-coding downstream 26928 20341072 ~ 20342296 (+)
G21669 NA non-coding downstream 79417 20393561 ~ 20393901 (+)
G21671 NA non-coding downstream 93648 20407792 ~ 20408327 (+)
G21687 NA non-coding downstream 166187 20480331 ~ 20518038 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 34294 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 116517 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 160762 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 826839 19399408 ~ 19403176 (+)
G21213 NA other upstream 937674 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 568054 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 981558 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1323599 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1661108 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1662365 21976509 ~ 22025911 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026233 NA non-coding NC_007114.7 CM002887.2 16064873 ~ 16068537 (-)