G21722


Basic Information

Item Value
gene id G21722
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20771684 ~ 20903541 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU32278
TGTTGGTGTCCTAGCTGCGTTTTGTCTTACAATTATATTGACTCACTATATtgacttattttaatgtttattgcacagTATTTATAGTACACTATTCTGTCTCCTCTGACACGCCACTGATTGCTGGTAATAAATATCATTGTTACTTGCAATTAGTTCAGAAATCTTCTTTATTATAGATGGCTCGCTTTAAACAGTTTCGCCTGGATTCTGTTAATGCGTCAAGAGTAAACTGAGATAATAGAAAATATACTGAAAGAACGCAGCAGCAGAGAGAAACGCCCTCTACTGCTGCCAGGAACGTTTACAACCTGAATCATTTCTACAAAACAATTCAAAGCTGCATCTAACATGTTTCATGACTCTCAAAGAGCTATGAAATGGATTATAAGCTTACTAGCACAAGGCTGACAGACTTCACAACAGTTAAATGTCAGGTAGGCATGTACGACAACATATCAAAAACAATCTGCAAATATTTTCAGGAACTATttattgatagatttttttttttacaatacatggACCACAATTATTAGTTATATTCAAGCTAGTTAAATCAGTTTCAGTACtctaagaatttttttttttttccaaattaagtaaattaaccACTTACCTACcttctaattatttttgtatttttgtcccCACTTAAAACCATTCTACAGCTTTATCTTTGAAATCCTATTCAATAAATGTAAGTTTTAGGTATCTAAAAGGTGAAACTAGGCTATCTCTTGAATACACCGATTATTCCTTCaggaaaactgaaataaaacttaaaaaaagcactCTGTTCTTCACTATCTTCTTTATTACACTATTTCGGGTTCAGAGTTTTCTGGACTAAAGCTTCATACCATAACTTTTGAACTTTGAGCTATGGCAATCATTTACGTCCAAAAAACCTAAAGTGATAAAGGAAAGAGTGAAgagctttaaaaacaatgaaaccaTTTCCTGCGACGGAGTATTAATGTGCTTGTGAGCATCGGACAGAGGAGATGGTGATGGCCATCAGAGGTCAAGGCTTTAGAGGATGATGCACTCTTTACGGTTTCTGGTGATCTTTTCAGGCTTTCCATCCTTAGCTTTAACAATGGCCTCCATGATCTAGAGattag
>TU32280
AGTTTGACAGGACAGAGGTTTGCTGGAGTGTTGAATTTAATTACAAAGTGACTAACAAACACAACATCTAAAACAAGATCACTGTTCAATTAAAAGCATACTCAACTGATTCAGAATATACAGAACATTATGTTGAGCATTACTGATGCTATACATTgatgcagataaaaaaaagcatgattacAGAATGAAAATGGCACTCTAAAATGagtataaaagtacaaaaaattacaacaaacaacagaaatactgcataaaaaaatttaaatacaaaaattaagtaTTCTTTTACAATTAGTATGTTTTAGGATTATTGACATTCATTGTTGCTTGATTTACATTTCTAGGaaggaaatatataaaaagtatgcaGTTTACTAATTATGTGTGGTTTTTATGATTTGTGTTATACTCAAGGTCAGAATTTGACTTGATCTTGACTAATTGCAGGTACTCCTTCAATCCCATGAGCCACCAGTGCTTCACACAAGTGAGTAAGGTACGTCGAGTCTGGATATCCACTgttgcacacaaacaaatatttcacattcacacaaaaagttaaattggatattttaaatgtcaaatgaatgcattctgAGAAATTAATCATTCTTTCTCCCAGTCAACactcattaaatataataaatgtaccAAATGTTGATTCATCTTTCAAACCTTACAAGGTTTTCCCTAGTAAAATCCTATgccaacatttatttaaaatacatactatTATAATCATACTAACTATACTAAAAATCCATTAAGACTTACtgatacaaaattataataaaaaatttataattattaagtattttttaacattactatTAGGATAATTAAAGTGTCCCTGAAGTATACAAAATCAGTATATCTTTAGTTGAACCACAATTAAAGTGGATTAAGTACATAattagttgttttaatttagcagacaTAAGTAGTAAAAGTACAactgcaatatattttaatttaaaattaaaaaacataactggaattttaaaaagcatgacaGCAAATACTTTAATTAACCATGCCATGGATATCCAGTCGTGTACAAGCTGAATTCCAGAAATGTGGGGgtgcttttaaaattgaattaaaataattataaaaaaagaacctaaaaaaatgtttaaatgtaaaaaatgtttaaaatgagaaatgtaaaattttatgcacaaaatgaaatttctaatttgatgcctgctacaggtcagGACAGGGGCATGTTCACCATGGTGTAGCAGCTCATCTTCATCGAGTTTCTGGAGTTTTGGTGTTGGCATTTGAtataggtttccagctgctCATGAGTTTGTGCTCAtctttgatgtatttttctttttgtgcgGCAAATGCTAGTCTGTCTCGATGAGCTGACCAGTTCAGCCTATTATAGGATATTAGTTTAGGAATTAGACGTAGAGcgtgaatatttaaaaacacttgagCCATGTGAATGGGAGGATTTTCCCCACTGATGGACATAGTCTTTACCGTGACAGGGTTGATTTTCAGCGATACTTCACTTCTCCATCATTATTTAAACCACAGAGATCCTCCCGCCTCAGCCGGGTCTCGCTGTTCTCACTGGACTTAAGTTCTCCATTTCCTTTTGAAGCTTTTACTCATGGATTcagtattttaatatcttatGATGCTGCAAATGTTCTCTAATATTGAATTTCCAGCATGAATGTGAGATTTGGACTCTTCTGACCAGTGGCGTAACTACAGACAGTGCAGCCACACTGGGGCCCCTGCGGTGCGAGGGCCTACATCACAAGAGTGTCCCGGCGACtctattactatattattatatatgtagaaataatattaataatacaatgtaaGTTGTCTAGTGGTGGAACTTTTTTCGAGCATTTCTGAGGCTGCGAGTTCAAATCCacactcgttttttttttttttttttttttttttATATTTTCAGGAACTATttattgatagatttttttttttacaatacatggACCACAATTATTAGTTATATTCAAGCTAGTTAAATCAGTTTCAGTACtctaagaattttttttttttttccaaattaagtaaattaaccACTTACCTACcttctaattatttttgtatttttgtcccCACTTAAAACCATTCTACAGCTTTATCTTTGAAATCCTATTCAATAAATGTAAGTTTTAGGTATCTAAAAGGTGAAACTAGGCTATCTCTTGAATACACCGATTATTCCTTCaggaaaactgaaataaaacttaaaaaaagcactCTGTTCTTCACTATCTTCTTTATTACACTATTTCGGGTTCAGAGTTTTCTGGACTAAAGCTTCATACCATAACTTTTGAACTTTGAGCTATGGCAATCATTTACGTCCAAAAAACCTAAAGTGATAAAGGAAAGAGTGAAgagctttaaaaacaatgaaaccaTTTCCTGCGACGGAGTATTAATGTGCTTGTGAGCATCGGACAGAGGAGATGGTGATGGCCATCAGAGGTCAAGGCTTTAGAGGATGATGCACTCTTTACGGTTTCTGGTGATCTTTTCAGGCTTTCCATCCTTAGCTTTAACAATGGCCTCCATGATCTAGAGattag

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32278 False 1127 lncRNA 0.35 2 20823275 20903541
TU32280 True 2600 lncRNA 0.32 3 20771684 20903541

Neighbor

gene id symbol gene type direction distance location
vat1 vat1,LOC107567018,LOC107754778 coding upstream 4085 20743788 ~ 20767599 (+)
mrc2 mrc2,LOC107754734,LOC107660711,LOC107552465,LOC107568156,LOC107689094,LOC107708551,LOC107739400 coding upstream 60638 20686238 ~ 20711046 (+)
tlk2 tlk2,LOC107567040,LOC107660745,LOC107689079,LOC107552467 coding upstream 88198 20666904 ~ 20683486 (+)
mettl2a mettl2a,LOC107739409,LOC107689110,LOC107754724,LOC107567049,LOC107660753 coding upstream 105358 20661639 ~ 20666326 (+)
itgb3a itgb3a,LOC107754700,LOC107660728 coding upstream 113141 20649947 ~ 20658543 (+)
LOC122337590 nxph3,LOC107710880,LOC107568907,LOC107660556,LOC107754835,LOC107590800 coding downstream 127083 21030624 ~ 21058249 (+)
zwi zwi coding downstream 341451 21244992 ~ 21246808 (+)
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding downstream 412732 21316273 ~ 21329556 (+)
LOC122337639 syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963 coding downstream 426787 21330328 ~ 21343248 (+)
LOC122341347 NA coding downstream 450826 21354367 ~ 21363114 (+)
G21740 NA non-coding upstream 160 20771124 ~ 20771524 (+)
G21739 NA non-coding upstream 803 20770657 ~ 20770881 (+)
G21733 NA non-coding upstream 33459 20737977 ~ 20738225 (+)
LOC122337901 NA non-coding upstream 45125 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding upstream 46984 20723458 ~ 20724700 (+)
G21761 NA non-coding downstream 53121 20956662 ~ 20957326 (+)
G22033 NA non-coding downstream 190125 21093666 ~ 21094831 (+)
G22034 NA non-coding downstream 195957 21099498 ~ 21099723 (+)
G22035 NA non-coding downstream 197666 21101207 ~ 21101601 (+)
G22044 NA non-coding downstream 237524 21141065 ~ 21213616 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 575963 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 658186 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 702431 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1368508 19399408 ~ 19403176 (+)
G21213 NA other upstream 1479343 19291445 ~ 19292341 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 392161 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 734202 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1071711 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1072968 21976509 ~ 22025911 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 1365445 22268986 ~ 22336227 (+)

Expression


Co-expression Network