LOC122337427 (ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195)


Basic Information

Item Value
gene id LOC122337427
gene name ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20882198 ~ 20956574 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU32328
agacttttaaaagaacattttgtgcaaTTAAAAGGTTCCATAAAAGGTAAAGGTTCTTAATGgaaccattaaaaaaactttatttttaagagtgtacatCTGCAGGAAATCACACTTTGACACAACAAGACCATGCAAATACATCTTAAGGTATATCTTAATTTCTTAAGGTTGCTATTTTTTGCAACATCGCCAGTTTAACTGGTTCACCCGCCAGCTTGATCTCCTTAAGCTGGTAGCTGTTTCTTTGTGGTTTTCTGACTACCATCTTCAAAAAAACAACCAGCTTAAGCTGTATTTTCCAGTATGGCCATTATTCCTGTACTCAATGCAAGTTACTGACTGGTCATTAGACTCTAATTCAGTTCCTACTTGAAGTCATGCATTACCTTAAAGTTTGATATATGAGTCGGTGGAACATCGCTGCCTCCTGCCTCCTTTTTTTGGCAGGCAGGTTGTTGGCTCCATCAGCTTTTATATGGCTTTAGTAGCGTGCATCTCCCCTGGAGCTGTGCTTTCCATTAAATCAGGCAGCGAAGCATATCATTGGCTTCTGGAGTTGCTGGCATGCTAGTGTTTAATGCACATCATAGGTTGAACGTTCACTCGTGGGGCACTTCGCTGATGTTTGTTCTGATATTAGCCTACTTGAGAGAACCTGATGAGATCAAGATAagatctctgtctgtctgcggGAAAGCGCTGAGAACAGACTCGCTTGTGTTTATCCCAGGCTTTGATTCTTAACACAGAGCAGAGAAGTTGGCAGACATCAAATAGAGAGAGTTGGGATGACAATACAATAGAATTCTGAGTGATTGACGCTTCTCAGGGGGTGGTGATTTGAGTATAATATATCGAAAACGTGgctatattttcataaaatgataaattgatTGGTTGTCCTAATGTGTTCTGAGAATATAAGTGTAAGGGAAGGCAATTTACCATGTGTTTCACATATAAACCAGACGCCCTGTGCTTGGCATCTACAAGGAGCCTATGCATCAATCAATCAGTAAGCTTCTAAAACAATTGAAGTTAACAGGTGGATGGAGTCTTGAATCGGTTCCCTGGAATGTGCCAAAGTTGCCATACATAAAACACCTTCACATTAAAATGTCCATTTAAATGGTTATAAATACACTTGTCAGCCAGAAAGTGTAtcagatgaaaagaaaacttGTTTGCAATATATTCACATACTAAAAAAACTCCACCATTGTCTCTCCATCTTTCATCACTTCTACTTCagtaattcttaattttttttataaacagatttttttttttttaaatttcaaatagaTTTATTCTTTGAGAACAGTATTTTATAGAGACAGTTTACTTTCGTAGCACTTAAAACTGATTGAATTTGAACACTCAAAGAGTGTCCATCACCAGAAAGTGCCTGTGGATTTTGTCAGGTGTCTTTGAGCAGTGTTCaaaaagtttcatttcatgTCAAATGTTTATGTTATCTATTTTGCCTGTGTGTTCTGTGTTAAGTGTATGTGATAgatttttttgcctttgtttttaatcttgttaatctttagttataataatatgttgatgaggatttcaaaataatatgtcATTATCCAGGTAAATAGTTCCAGGTGAATTATGTATTATTCTGTTTCTGAAAAAtacctacactgtaaaaaaaaaaaaaaagaaagaaaaaaacctccTTCTTATTTAGGATTTTGTGTTGTTTACAGGCAAAACATCTAAAGATCATtgcttgaaaaacaaaacattttcagagaaTTTATGCTGAATGACGTGTCTTAcataatttgc
>XM_043233778.1
CACTCGTGCCCCCCTCATCTCTGCGTGCACGACTCTCTCCTCCGCAGTGCACTGCTGGACAGCGCTGAGCGCGGAGTACAGGACAGCACCGGACAGTTAGCGCGTCCCTACAGTCCTAAAGTCCCAAACAcgagagcagcagcagcagccacaTGGAGCTAATATGAACTGTCGGAGGGCTGGTCTTCACTTCACGACTCACACTCACAGATTCACAGTTTGAGAGGGAAGGGACGTTTCAGACATGGACACCTTGGTGTGGATCTTGATTTGCGGAGCGcTGGGGCTGGTGTTTGGCTCTAAGCTGGAGCGGGCCATAGACGAGGAGTGTGAGTCGGGCAATTACACTCATGACGGGGAGTGCTGTTTACAGTGTCCTCCAGGAGAGGGAGTGGTCAAGGAGTGCGGGGCAACCCAGACTGAATGCAGTCAGTGCTTAGACAGCGAGACGTACTCTGAGACGTTCAGTCACACAGAGAAGTGTCAGACGTGTAGAGAGTGCACGGGTCTCATGCGCATGCAGACCCCCTGCACCGACTCGAAcgacgctgtgtgtgtgtgcaactaCGGCTTCTTCATGGACGATCTGACGCACCAGTGCGAGCCGTGCACCGTGTGTCCACGAGGACATGGTGTGCTGATACGCTGCGAGCACACCCACGACACACTCTGCGAGGAGTGTCTGGACGACACCTACTCTGACCGGGAGAGCACGCTGGACCCCTGCCTGCCCTGCACCATCTGTGAGGAGGGGATAGAGATTCTCATGAGGAACTGCACGCCCTACGAAGATGCATGGTGTCACGATCCATTGAGTCCTACCTATCCCGCTTCCACTAGTGATTCCAGCTCATTCGTCACTGATCCGAACCGTTTGTGGAGCCCCAACCCCGGAGGGGACGCCACCACGCCCAAACCCAGCTCCCCTCATTTCATTGGCAGAGGGCTGAACGAGAACCTGATTCCCATCTACTGCCCCATCCTTGCAGCGGTCGTAGTCGGTCTCCTGGCTTACATCATTTTCAAGAGGTGGAACAGCTGCAAGCAGAATAAACAGGCAGCTAATAATCGCGAGGCCACAGCCAATCAGACACCATCTCCAGAGGGAGAGAAGCTGCACAGCGACAGCGGCATCTCAGTGGACAGCCAGAGCCTGCAGGAGCAGCAAGCGCAGACGCAGACGCAGGCGCAGGCCCACACACAGCTGCATGCAGCAGAGCAAATCGTGGTGAGAGTGGATGGAGGGGCTCAGCCTGACTCCCCCCCACCTCAGGCCTAACCAGTGAGGAAGAGGGTGCTATGttatcaaaataacaataaagagaGGATGAGAGGTTGGAGTGAAGGAAACAAGGAAGCAGATAGAGGAGAAAGGAGGAGCGAAGCCATGATGGCCATCCAGCAAGGGACGCAGAGACAAGATCTTTGATTCTTTTGAACCCAGCACGGATGATTTGTTGATGAGCTGGTTCAACAGCACCAATGGATCCACATCAACGATCAGACTCACTGGCTTTAAACAGCTActtctaaataaacaaaagcctATTAAGAAAGTTCACCATAATGTATACTGAAACCCACCACAAACTCTGATGAATGTTTAGCATATACTGGGTTTCTCAGATGTATAATTGGCCCTTGTGACACAAACTCTGGACATCCCGGGCTTCACAAGAGGACGCCAAGAGACACATTCACTGGCTTCACGGATATCGCGCAATTTAGCAGCCACACCATGGTTCCTCCTCCTGGAGCCTTCTGCCTGATCTAATAAGGATTTCGTTTTTGCCTTATCTTTGAAGTATTAATAGATTTTGTCTATAACATCAAGGCCCTTTATTCAATCAGAATTGTACACATTTTCAGGTGTGTGTTAAAACTTTGGGGGTTGTATGCAGTTAAAGCAGAACTACCAGTCTCCGTCTGCTTTCAAAGCAGCTGATCGCAGGTCAGCATTTATGGGCAACAACTCACGACTGTGACATTTTCTGACCTTTAATAATGTAATGACTCAGATCTATACTTAGCTCGccttcctttttctctctttcacaaccttttttctctataaaacacacacatagcgTGTCATATTCCCTGCCTTCCTCTAGTTACTGCAGCTTAGGTTTCATGCCTAGATCTTCTCGCCTTACCTCTTCAGAAATCTGAGTCACAGTGCAAAGAGAAACCAGGATTCAAAGAGCTACACAACTATTTTCATGCCATCATGCACTCCTAGAAGTAACCACCATGTTTATGTCCTACCATTAATTCAGGTTTGTTAGGGATTTGGTTCAAATTCAATTTAGCAGCACATGTTTGGTAATGACCCAGTAATGATTCTTTGAGTACTTCTGAGCAAACCTTATCGACCACCTCAATAATTCGTCTTAACTATTTAGTAAACACAAATTATACTATTTTGCTAATATTAAGATACTTCAGAACTTCAAATGTTGTCATATGAATAACCAATAACTACACTAACTTAAGTCTCACAAGccttaaactaaaaaaaattaaaaagactcTACAATCAATGATTTTTACTGTAGCTCTTGATGAATCATCTGTCTCGGTTTTCTTCATCTTTTATTGCCCcatttgctctttctttctttctcattctttGTCTTGGTTACATGATTCATTCCATGAATGCTGATGCAGATTTAGATGCTATAATGTGGTTTGAATTACTCAACCATCTCAGCAGTCATGAGCTTGAGAGCTGGTTTAAGGATGCTTCACTGACCTGGACAAAGAGGCAATAAAATGTTccttaacattattatataagcTTTAAGGTAAATCGAAAAGGTTTAACCTAACAAACGAGTtaacaaaaaacagaacaacTAAAAATAGTCTTTGCTTCCTGTTTTCTATCCATCCAATAAATATTGCATCCATAAATAGACATTAGGAACTTGACACAGATATTCCATAGCGTAGCCACACACGCAATATATAATGGACTGTCTTTCGTTGCATTTCTAATGCCCTCACTGTCAGGCTATGGAATAAACATGAAAGGCATTAGTGAGACATTCCTGTCAGGCAGGTCGTAATTAGCCCTGAAGCTTTTCGTTTTTCTTCCCCACAGTCAGTACACTCTCCCGGGGATCCACACTGCTCAGATTCACTTCCCTGGAGCTATGCCTCTCCATTCTGGGACTCAGCATCCAACTTTTCTGCTCTCAGCTCCACTAATATTcccacactcttaaaaataatgtcttcCAAAAGATGTTTCACAGTAATGCAACTGAAGAATGATTTTGgcttccccaaagaaccttttagTGTTACGAaaactctaaataaaaaaaaaaacctttcccccttaaaagacttttaaaagaacattttgtgcaaTTAAAAGGTTCCATAAAAGGTAAAGGTTCTTAAtggaaccattaaaaaaaactttatttttaagagtgtacatCTGCAGGAAATCACACTTTGACACAACAAGACCATGCAAATACATCTTAAGGTATATCTTAATTTCTTAAGGTTGCTATTTTTTGCAACATCGCCAGTTTAACTGGTTCACCCGCCAGCTTTGTTCAAGCCAGCTTGATCTCCTTAAGCTGGTAGCTGTTTCTTTGTGGTTTTCTGACTACCATCTTCAAAAAAACAACCAGCTTAAGCTGTATTTTCCAGTATGGCCATTATTCCTGTACTCAATGCAAGTTACTGACTGGTCATTAGACTCTAATTCAGTTCCTACTTGAAGTCATGCATTACCTTAAAGTTTGATATATGAGTCGGTGGAACATCGCTGCCTCCTGCCTCCTTTTTTTGGCAGGCAGGTTGTTGGCTCCATCAGCTTTTATATGGCTTTAGTAGCGTGCATCTCCCCTGGAGCTGTGCTTTCCATTAAATCAGGCAGCGAAGCATATCATTGGCTTCTGGAGTTGCTGGCATGCTAGTGTTTAATGCACATCATAGGTTGAACGTTCACTCGTGGGGCACTTCGCTGATGTTTGTTCTGATATTAGCCTACTTGAGAGAACCTGATGAGATCAAGATAagatctctgtctgtctgcggGAAAGCGCTGAGAACAGACTCGCTTGTGTTTATCCCAGGCTTTGATTCTTAACACAGAGCAGAGAAGTTGGCAGACATCAAATAGAGAGAGTTGGGATGACAATACAATAGAATTCTGAGTGATTGACGCTTCTCAGGGGGTGGTGATTTGAGTATAATATATCGAAAACGTGgctatattttcataaaatgataaattgatTGGTTGTCCTAATGTGTTCTGAGAATATAAGTGTAAGGGAAGGCAATTTACCATGTGTTTCACATATAAACCAGACGCCCTGTGCTTGGCATCTACAAGGAGCCTATGCATCAATCAATCAGTAAGCTTCTAAAACAATTGAAGTTAACAGGTGGATGGAGTCTTGAATCGGTTCCCTGGAATGTGCCAAAGTTGCCATACATAAAACACCTTCACATTAAAATGTCCATTTAAATGGTTATAAATACACTTGTCAGCCAGAAAGTGTAtcagatgaaaagaaaacttGTTTGCAATATATTCACATACTAAAAAAACTCCA

Function

symbol description
ngfra Predicted to enable coreceptor activity; death receptor activity; and nerve growth factor binding activity. Predicted to be involved in Rho protein signal transduction. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Alzheimer's disease and mental depression. Orthologous to human NGFR (nerve growth factor receptor).

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32328 False 1809 lncRNA 0.35 2 20882198 20956574
XM_043233778.1 True 4589 mRNA 0.44 6 20923497 20955984

Neighbor

gene id symbol gene type direction distance location
tmub2 LOC107571926,LOC107708558,LOC107754824,LOC107566939,LOC107660620,LOC107689088 coding upstream 93194 20784533 ~ 20789004 (+)
asb16 LOC107708556,LOC107660653,LOC107689112,LOC107566969,LOC107571928 coding upstream 97810 20780215 ~ 20784388 (+)
vat1 vat1,LOC107567018,LOC107754778 coding upstream 114599 20743788 ~ 20767599 (+)
mrc2 mrc2,LOC107754734,LOC107660711,LOC107552465,LOC107568156,LOC107689094,LOC107708551,LOC107739400 coding upstream 171152 20686238 ~ 20711046 (+)
tlk2 tlk2,LOC107567040,LOC107660745,LOC107689079,LOC107552467 coding upstream 198712 20666904 ~ 20683486 (+)
LOC122337590 nxph3,LOC107710880,LOC107568907,LOC107660556,LOC107754835,LOC107590800 coding downstream 74050 21030624 ~ 21058249 (+)
zwi zwi coding downstream 288418 21244992 ~ 21246808 (+)
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding downstream 359699 21316273 ~ 21329556 (+)
LOC122337639 syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963 coding downstream 373754 21330328 ~ 21343248 (+)
LOC122341347 NA coding downstream 397793 21354367 ~ 21363114 (+)
G21740 NA non-coding upstream 110674 20771124 ~ 20771524 (+)
G21739 NA non-coding upstream 111317 20770657 ~ 20770881 (+)
G21733 NA non-coding upstream 143973 20737977 ~ 20738225 (+)
LOC122337901 NA non-coding upstream 155639 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding upstream 157498 20723458 ~ 20724700 (+)
G21761 NA non-coding downstream 88 20956662 ~ 20957326 (+)
G22033 NA non-coding downstream 137092 21093666 ~ 21094831 (+)
G22034 NA non-coding downstream 142924 21099498 ~ 21099723 (+)
G22035 NA non-coding downstream 144633 21101207 ~ 21101601 (+)
G22044 NA non-coding downstream 184491 21141065 ~ 21213616 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 686477 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 768700 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 812945 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1479022 19399408 ~ 19403176 (+)
G21213 NA other upstream 1589857 19291445 ~ 19292341 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 339128 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 681169 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1018678 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1019935 21976509 ~ 22025911 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 1312412 22268986 ~ 22336227 (+)

Expression


Co-expression Network