G22084 (LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878)


Basic Information

Item Value
gene id G22084
gene name LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21381808 ~ 21383124 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU32803
ACTCAGACTCTAAGATGAAGTGTTATTGTAAGTAATATAAACCTTTAATACACAAGTggtagtacatttaaaatagatatataatcaaataaaataaaatacaaccaTAAAAATTCAATAGTCTCTCAAAAAAATTAGCTCAAAGTAAAGACAATAATTAGCTGTGCATAATAATCGCAAACATCATGTATTTAGGCCAAATTTCACATCCTCATTATACAAAGACCCTGTGAGCAGAAGCTTGCTGAACTTCAACAAGCATTAGTTTGCAGGAAATGAAAGTAAGAGATTTCCAAgaatagtacatttttaaaaggtaaaatataAAGGACAGTATGACTATACACAGACTTCACAGGTTTATGAAAACTTGTATGTCACAGTTATTCTCTTAATCAAAGAACACTAAAAACTGTCATTCGAACGATCTCTATGTAGAGAGATATAGGGAGAATATGAAAGGAATGATGGAGGAAGTGagagaaaccaaaaataaaaggaGGTTGGGTGAGCTTCTGAACCCGTTGTTGTTGAATTGAACAAATCCAGGAGGGTTGCTGCCTATGGTAGAGGTGATCCAGTCCTGGTACTGAGAGACTCTGGCGTACACACCAGGATATTTGGGGTCAGCACATCCAATACCAAAACTCACAACACCGGGCTGAATCCACAGAGAGCTGTTTCTAATCACCAACGGACCTCCAGAGTCGCCCTGACATGAATCTTTTCCTCCCTGATTCAACAGTCCGGCACACATCATATTGTTAGTGATGGCCCCTCCGTAAAGCATTATTACAGTCACTGTTGCTCACAACCGG

Function

NR:

description
PREDICTED: trypsin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32803 True 818 lncRNA 0.38 2 21381808 21383124

Neighbor

gene id symbol gene type direction distance location
LOC122337169 LOC107731852,LOC107571197 coding upstream 15654 21363439 ~ 21366154 (+)
LOC122341347 NA coding upstream 18694 21354367 ~ 21363114 (+)
LOC122337639 syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963 coding upstream 38560 21330328 ~ 21343248 (+)
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding upstream 52252 21316273 ~ 21329556 (+)
zwi zwi coding upstream 135000 21244992 ~ 21246808 (+)
LOC122337825 LOC107590788,LOC107684637,LOC107710882,LOC107678872 coding downstream 6023 21389147 ~ 21403118 (+)
LOC122341349 LOC107725047,LOC107590786,LOC107678868,LOC107710878,LOC107684649,LOC107582907,LOC107725048,LOC107684648 coding downstream 46558 21429682 ~ 21437955 (+)
LOC122340007 LOC107710878,LOC107678868,LOC107725047,LOC107590786,LOC107582907,LOC107684649 coding downstream 58798 21441922 ~ 21444741 (+)
LOC122341350 LOC107738996 coding downstream 64047 21447171 ~ 21450709 (+)
cdc27 cdc27,LOC107740649,LOC107754304 coding downstream 400332 21783456 ~ 21795403 (+)
G22046 zwi non-coding upstream 38539 21247604 ~ 21343269 (+)
LOC122337857 NA non-coding upstream 89873 21290349 ~ 21291935 (+)
LOC122337912 fam57b,LOC107684641,LOC107678875,LOC107754912,LOC107710888 non-coding upstream 112316 21253746 ~ 21269492 (+)
LOC122337868 NA non-coding upstream 130378 21248110 ~ 21251430 (+)
G22044 NA non-coding upstream 168192 21141065 ~ 21213616 (+)
G22197 NA non-coding downstream 252620 21635744 ~ 21636079 (+)
G22198 NA non-coding downstream 252999 21636123 ~ 21636570 (+)
G22201 NA non-coding downstream 351014 21734138 ~ 21734422 (+)
LOC122341843 NA non-coding downstream 652758 22035882 ~ 22089931 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding downstream 1128304 22511428 ~ 22672911 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other upstream 425234 20882198 ~ 20956574 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 1186087 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 1268310 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 1312555 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1978632 19399408 ~ 19403176 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 254619 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 592128 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 593385 21976509 ~ 22025911 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 885862 22268986 ~ 22336227 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other downstream 1145865 22528989 ~ 22530060 (+)

Expression


Co-expression Network