G22094 (tcap,LOC107684635,LOC107590785,LOC107582871,LOC107727457,LOC107694957)


Basic Information

Item Value
gene id G22094
gene name tcap,LOC107684635,LOC107590785,LOC107582871,LOC107727457,LOC107694957
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21345129 ~ 21493498 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU32816
ATGCAGATGTGCACTGTCCTGGAGAAGAAAGGTGGATGTGTGGTCGGAGCAGAGCTCAGCTGTAACGTGAGGGAGGAAAATCCAACCAAGAGAGAGAGTTACACCGCGAACTGGCGCAGCATCAATATGAAGACTCAACATGAGGATCGcCAATCGATGCTGATGTCAGACGACTCTCGCCGGAGTCCCTGTCCCGTTACTGGCAGGCGCGTCCTCTGAATCAGACCTGCCCATCGGGTGTTGTCCGAGTGGGCGCTGTGGAGACGGGTGTAAGGGAGCACCAGCTCTTGCCCTACAGGAACAGCCTGCCCCTGCCCATCTTCAAGCCTGCTGAACTGGGCGTCCGCCTGGGCCGTGGAGCCCCACACACCCTGCAAGATCTGCCCCCTGGGTGCTTTGGCGAACTCCATTCGCATGGGTTTGACGGGCGGCAGATCTCTGGTGATCTGTTCCACCGCTCTCTTGTCTGGACAGGCTCCGTCGGGAACCCTGGCAGGGGGCAGATCTTGCAGGGTGTGTGGGGCTCCACGGCCCAGGCGGACGCCCAGTTCAGCAGGCTTGAAGATGGGCAGGGGCAGGCTGTTCCTGTAGGGCAAGAGCTGGTGCTCCCTTACACCCGTCTCCACAGCGCCCACTCGGACAACACCCGATGGGCAGGTCTGATTCAGAGGACGCGCCTGCCAGTAACGGGACAGGGACTCCCGGCGATCCTCATGTTGAGTCTTCATATTGATGCTGCGCCAGTTCGCGGTGTAACTCTCTCTCTTGGTTGGATTTTCCTCCCTCACGTTACAGCTGAGCTCTGCTCCGACCACACATCCACCTTTCTTCTCCAGGACAGTGCACATCTGCATCTTCGACTTCCGTTTGCGAGCGGCTTAAAAACTTAAATGTCAGTAAGTGATCTTAACTTTTTAACAATACTGTTTTAAAGCTTTGTAATTTTCTTTGCTCTTTATCCTGAGTTTGAGGGAGGACTCGTCCGTCTGTCTCCTGCTCCGTCTggtcgtctTTTCAGAGTT

Function

symbol description
tcap Predicted to enable protein-macromolecule adaptor activity; titin Z domain binding activity; and titin binding activity. Predicted to be a structural constituent of muscle. Acts upstream of or within T-tubule organization and heart contraction. Located in Z disc. Is expressed in heart; myotome; and skeletal muscle. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2G and hypertrophic cardiomyopathy 25. Orthologous to human TCAP (titin-cap).

NR:

description
PREDICTED: telethonin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32816 True 1022 lncRNA 0.56 5 21345129 21493498

Neighbor

gene id symbol gene type direction distance location
LOC122337639 syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963 coding upstream 1881 21330328 ~ 21343248 (+)
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding upstream 15573 21316273 ~ 21329556 (+)
zwi zwi coding upstream 98321 21244992 ~ 21246808 (+)
LOC122337590 nxph3,LOC107710880,LOC107568907,LOC107660556,LOC107754835,LOC107590800 coding upstream 286880 21030624 ~ 21058249 (+)
tmub2 LOC107571926,LOC107708558,LOC107754824,LOC107566939,LOC107660620,LOC107689088 coding upstream 556125 20784533 ~ 20789004 (+)
cdc27 cdc27,LOC107740649,LOC107754304 coding downstream 289958 21783456 ~ 21795403 (+)
kansl1b LOC107740647,LOC107662409,LOC107754301,LOC107694965 coding downstream 303522 21797020 ~ 21842872 (+)
scn4ab scn4ab,LOC107754300,LOC107683681,LOC107582874 coding downstream 405808 21899306 ~ 21918705 (+)
gh1 LOC107585059,LOC107740644,LOC107662423 coding downstream 430991 21924489 ~ 21926112 (+)
rdm1 zgc:103564,LOC107585100,LOC107662434,LOC107740678 coding downstream 433368 21926866 ~ 21929640 (+)
G22046 zwi non-coding upstream 1860 21247604 ~ 21343269 (+)
LOC122337857 NA non-coding upstream 53194 21290349 ~ 21291935 (+)
LOC122337912 fam57b,LOC107684641,LOC107678875,LOC107754912,LOC107710888 non-coding upstream 75637 21253746 ~ 21269492 (+)
LOC122337868 NA non-coding upstream 93699 21248110 ~ 21251430 (+)
G22044 NA non-coding upstream 131513 21141065 ~ 21213616 (+)
G22197 NA non-coding downstream 142246 21635744 ~ 21636079 (+)
G22198 NA non-coding downstream 142625 21636123 ~ 21636570 (+)
G22201 NA non-coding downstream 240640 21734138 ~ 21734422 (+)
LOC122341843 NA non-coding downstream 542384 22035882 ~ 22089931 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding downstream 1017930 22511428 ~ 22672911 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other upstream 388555 20882198 ~ 20956574 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 1149408 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 1231631 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 1275876 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1941953 19399408 ~ 19403176 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 144245 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 481754 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 483011 21976509 ~ 22025911 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 775488 22268986 ~ 22336227 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other downstream 1035491 22528989 ~ 22530060 (+)

Expression


Co-expression Network