LOC122341843


Basic Information

Item Value
gene id LOC122341843
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22035882 ~ 22089931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU33104
CATATGATACCAGATCCGCGTCCCTACAGTAGATAGACACACTAGTCCTTAATTCTGCGGCTGCACTCTTGAATCACGGTGATCCCCTGATCACAAACCCTTTGCATTTGCTATGTGCTGACCGGTAGGCACGAAAACCAGGAGTTACTGTTTAACAGGAAAGGGAAGCCGAAGGACGAAGCGTTTACACTTGGCGAAGGTGTTCTTCATCTCCAGCGCTTCCCACTATACGGACACCAGAGCAAAAGAGCAGCGGATCCTCCTCATCCACACGACTGCATATCAACATAACGGAGCCGCTGAGGTTTAAATCTTAAGGAGATGGGACTTGGGCCTCTGCCCAAAGGAGAACGATTCCATCTCTGCCCCTATAGCTGTGACCGGTTTGCCGTGAGGCCCCGTACCCCCCTCTAATGATCTCTCTATAGCCCGGTCCACAACTGTGCAGTCATGTTCAGGAACAGTCTGAAGATGCTGCTTG
>TU33106
CATATGATACCAGATCCGCGTCCCTACAGTAGATAGACACACTAGTCCTTAATTCTGCGGCTGCACTCTTGAATCACGGTGATCCCCTGATCACAAACCCTTTGCATTTGCTATGTGCTGACCGGTAGGCACGAAAACCAGGAGTTACTGTTTAACAGGAAAGGGAAGCCGAAGGACGAAGCGTTTACACTTGGCGAAGGTGTTCTTCATCTCCAGCGCTTCCCACTATACGGACACCAGAGCAAAAGAGCAGCGGATCCTCCTCATCCACACGACTGCATATCAACATAACGGAGCCGCTGAGGTTTAAATCTTAAGGAGATGGGACTTGGGCCTCTGCCCAAAGGAGAACGATTCCATCTCTGCCCCTATAGCTGTGACCGGTTTGCCGTGAGGCCCCGTACCCCCCTCTAATGGT
>XR_006250495.1
GCTGTAGCAGAGCACCCGTATGCGCACGGCGTCTTCATATGATACCAGATCCGCGTCCCTACAGTAGATAGACACACTAGTCCTTAATTCTGCGGCTGCACTCTTGAATCACGGTGATCCCCTGATCACAAACCCTTTGCATTTGCTATGTGCTGACCGGTAGGCACGAAAACCAGGAGTTACTGTTTAACAGGAAAGGGAAGCCGAAGGACGAAGCGTTTACACTTGGCGAAGGTGTTCTTCATCTCCAGCGCTTCCCACTATACGGACACCAGAGCAAAAGAGCAGCGGATCCTCCTCATCCACACGACTGCATATCAACATAACGGAGCCGCTGAGGTTTAAATCTTAAGGAGATGGGACTTGGGCCTCTGCCCAAAGGAGAACGATTCCATCTCTGCCCCTATAGCTGTGACCGGTTTGCCGTGAGGCCCCGTACCCCCCTCTAATGATCTCTCTATAGCCCGGTCCACAACTGTGCAGTCATGTTCAGGAACAGTCTGAAGATGCTGCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33104 False 481 lncRNA 0.51 3 22035917 22089931
TU33106 False 418 lncRNA 0.51 2 22035917 22064100
XR_006250495.1 True 516 lncRNA 0.52 3 22035882 22089931

Neighbor

gene id symbol gene type direction distance location
LOC122331845 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 coding upstream 59516 21975235 ~ 21976366 (+)
arhgap27l LOC107585057,LOC107740641,LOC107754298,LOC107683679,LOC107582875 coding upstream 61181 21951307 ~ 21974701 (+)
ifnphi3 LOC107579891,LOC107579948 coding upstream 101649 21933244 ~ 21934233 (+)
rdm1 zgc:103564,LOC107585100,LOC107662434,LOC107740678 coding upstream 106242 21926866 ~ 21929640 (+)
gh1 LOC107585059,LOC107740644,LOC107662423 coding upstream 109770 21924489 ~ 21926112 (+)
tanc2a tanc2a,tanc2,LOC107662401,LOC107711284,LOC107585082,LOC107667760 coding downstream 34959 22124890 ~ 22256992 (+)
lsm12a lsm12a,LOC107585053,LOC107740636,LOC107662400,LOC107708984,LOC107562026,LOC107582879 coding downstream 247064 22336995 ~ 22342536 (+)
si:ch211-237i5.4 si:ch211-237i5.4,LOC107662436,LOC107711287,LOC107585097,LOC107667762,LOC107582952,LOC107740660 coding downstream 254731 22344662 ~ 22347767 (+)
nags LOC107585096,LOC107662425,LOC107740635,LOC102299446 coding downstream 259186 22349117 ~ 22356519 (+)
LOC122332454 LOC107667744,LOC107582924 coding downstream 267023 22356954 ~ 22362402 (+)
G22201 NA non-coding upstream 301460 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 399312 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 399803 21635744 ~ 21636079 (+)
G22094 tcap,LOC107684635,LOC107590785,LOC107582871,LOC107727457,LOC107694957 non-coding upstream 542384 21345129 ~ 21493498 (+)
G22084 LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878 non-coding upstream 652758 21381808 ~ 21383124 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding downstream 421497 22511428 ~ 22672911 (+)
G22554 ddx5,LOC107695114 non-coding downstream 850316 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 999542 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 1011013 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 1024347 23114278 ~ 23116840 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 9971 21976509 ~ 22025911 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other upstream 59217 21975252 ~ 21976665 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other upstream 301755 21637743 ~ 21734127 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other upstream 621596 21295702 ~ 21414286 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other upstream 1079308 20882198 ~ 20956574 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 179055 22268986 ~ 22336227 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other downstream 439058 22528989 ~ 22530060 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other downstream 456227 22546158 ~ 22547208 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other downstream 632091 22722022 ~ 22726158 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other downstream 675716 22765647 ~ 22770602 (+)

Expression


Co-expression Network