G22340 (atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044)


Basic Information

Item Value
gene id G22340
gene name atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22511428 ~ 22672911 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU33156
atatatttttACAGATTTCAACCATTTATTTCAGATGGTCTTATGTGAAGTGTGTTCTTACATAAAACTTTCAGATAGAGAAAAACGGTACAGGGGAACATAAAAAGGGAGAgagtttcttgttttgttgGAATGGCGGTGCCACGGCCTAAGCTGCGTGTCAGAGTTCCAGTCTCCAGATCAGGGGAGTCGAACCGCATGAAGACATCCAAATTACATGGCAAACAGGATGAGGAACGCCACCATCAGACAGAACAGACCCATGGCCTCAGACAGAGCAAAGCCTAAAATGGCGTAGGAAAAGAGCTGCTCTGCCAGGAATA
>TU33157
ttttttttttttttttttttttttttttttttttttttttttggATTTCAACCATTTATTTCAGATGGTCTTATGTGAAGTGTGTTCTTACATAAAACTTTCAGATAGAGAAAAACGGTACAGGGGAACATAAAAAGGGAGAgagtttcttgttttgttgGAATGGCGGTGCCACGGCCTAAGCTGCGTGTCAGAGTTCCAGTCTCCAGATCAGGGGAGTCGAACCGCATGAAGACATCCAAATTACATGGCAAACAGGATGAGGAACGCCACCATCAGACAGAACAGACCCATGGCCTCAGACAGAGCAAAGCCTAAAATGGCGTAGGAAAAGAGCTGCTGTTTCAGGGAGGGATTCGGCATAGCCGATAATGAGGCTGCCGAACACGGTCCCGATTCCCGCTCCTGACCCGGCCACACCCACCGTGGCAGCTCCAGCACCAATGAACTTGGCCGCTGTGTCGATGTCTCTGGATGCAGCACTGGTCTGGAAGCCCCGGGTTACATTGAGAAGGCTCACTTCACTGATCGGCAACAGAGCGGCCTTCAGTTCTTGCTTCACCTCTGCTGAACACCACTGAAACAGGCCGGGCCAAAACCCTGGATCCTCCACGGACCTGAGgtagaaaaatattaattcagaATGAGAACTAAAATGGGAtgagcattgtttttttttttttttttttttattaaagcaactTTCAGACAAGTTTTATGTGAGTGCAAGGATCCAATTGGTATTAAATGTGATCAAAAACCTTAAATCAATGcacttgaagaaaaaaacatgttggtATTTAATTACTGCTCTAGCTCTTTTCCTAATCTAGCTTCTGAACAAACATGGCATCTTTTACTATGATTATCGACTTGCGTTCCTCTAATGCAACTTTGAACCAAAACATCTAAAATTCATAAACCTAAGCCAAGCctttaaatgcatgattatgAATGTGGTTAGAACTAATTAACAGACAATTACTCAAGAGACAAAGGGTCTCTGAAAAGACACGGCATTAAGGTCATTTTCTGAGACGGTCAATGGAGTGTGACGTATTTGAGACTGAATACATACCACAGCAGGTGAGGTGACAAACTTAGCACAAGCGTACATGTTTGAAGCCTGTGGAGAAGGAAGATGTTAGACAGGTAAAAGAAAAGCACTAGTTACAGCATGGCATGGAATTTAGTGTTCATTTAGTGTAATATACACCGTGATAGAGCGACAAAGACAGGTTTGGGCCATCAAGACTTAGTTTACAACTCACTTAGCAACTGAAGAGACTTAAGATTAAGCCATTCAGAGAAAGcaaatgagattttaaaaagaagtcCCATCATTTAATCGGCACCTAAACCAAAAGACCCTTTACACGCATCCGTTTAGATCCGTTTGGATGCGTGCACATCCAATCAAAGGATGAAAGACTGCTTCGGCCCAAGACAACATCCCCTGTAGGTCAGTGGTCAAACATGGCAGCATAGAGGTCACGGACTGGCTGTTTTGAGTTTTTACACACAATAAAGATGCACGGATTGGTGGGATAGTTTaagcatcaaaaataaaatcgaGGTTATTAGATGGAGCCTGTTCAACAGTCCACATTGTGACACGAGCATCAACTCAAGTCCTGCCATAAATCCTGGACTCAATATATAGATAACTCTATATCTTCCCTCTCATGCAAGCTCTCGTAATTATTTGCAATTCAAAGTTAC

Function

symbol description
atp5g1 Predicted to enable ligand-gated channel activity. Predicted to be involved in several processes, including ATP synthesis coupled proton transport; cellular response to L-glutamate; and negative regulation of mitochondrial membrane potential. Predicted to act upstream of or within ion transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system; liver; and nervous system. Orthologous to human ATP5MC1 (ATP synthase membrane subunit c locus 1).

NR:

description
PREDICTED: ATP synthase F(0) complex subunit C2, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33156 False 323 lncRNA 0.44 3 22598018 22672911
TU33157 True 1722 lncRNA 0.42 5 22511428 22640362

Neighbor

gene id symbol gene type direction distance location
ppp1r9ba ppp1r9b,ppp1r9ba,LOC107740632,LOC107717206,LOC107667750,LOC107582927 coding upstream 20638 22455402 ~ 22490790 (+)
col1a1a LOC107585052,LOC107740634,LOC107582926 coding upstream 61779 22434373 ~ 22449649 (+)
gngt2a NA coding upstream 123943 22384731 ~ 22387485 (+)
LOC122341813 NA coding upstream 128641 22374082 ~ 22382787 (+)
LOC122333458 NA coding upstream 139756 22365276 ~ 22371672 (+)
hoxb13a hoxb13a,LOC107687788,LOC107662424,LOC107585093,LOC107717198,LOC107740673,LOC107582955 coding downstream 565 22673476 ~ 22675120 (+)
hoxb10a hoxb10a,LOC107662435,LOC107740623,LOC107585092 coding downstream 12102 22685013 ~ 22689691 (+)
hoxb9a hoxb9a,LOC107585091,LOC107662432,LOC107717219,LOC107687790,LOC107582956 coding downstream 18267 22691178 ~ 22699171 (+)
hoxb8a hoxb8a,LOC107662386,LOC107582957,LOC107585089,LOC107740672,LOC107687792,LOC107717220 coding downstream 31013 22703924 ~ 22706737 (+)
hoxb7a hoxb7a,LOC107740671,LOC107662388,LOC107717221,LOC107585088,LOC107687793,LOC107582958 coding downstream 35083 22707994 ~ 22712057 (+)
LOC122341843 NA non-coding upstream 421497 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 777006 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 874858 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 875349 21635744 ~ 21636079 (+)
G22094 tcap,LOC107684635,LOC107590785,LOC107582871,LOC107727457,LOC107694957 non-coding upstream 1017930 21345129 ~ 21493498 (+)
G22554 ddx5,LOC107695114 non-coding downstream 267336 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 416562 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 428033 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 441367 23114278 ~ 23116840 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 723590 23396501 ~ 23400922 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other upstream 175201 22268986 ~ 22336227 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 485517 21976509 ~ 22025911 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other upstream 534763 21975252 ~ 21976665 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other upstream 777301 21637743 ~ 21734127 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other upstream 1097142 21295702 ~ 21414286 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other downstream 49111 22722022 ~ 22726158 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other downstream 92736 22765647 ~ 22770602 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other downstream 226422 22899333 ~ 22908135 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other downstream 485308 23158219 ~ 23163716 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 665468 23338379 ~ 23343640 (+)

Expression


Co-expression Network