hoxb5a (hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619)



Basic Information


Item Value
gene id hoxb5a
gene name hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22722022 ~ 22726158 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU33382
CGGGTCTTCCAGTCTCCAGCCCCGGAGACGCGATTCCGGCAGCCGTCAAGCTGCTCGCTCGCGTCTCCGGAGCCGCTGCCTTGTTCCAACAGCGAAAGCCTCGGACCCAAAGGCTCTTCGCCCCCTTCCGACCAAAGCACCACCACTGCGGGTAATAATCTAACCAACAACACACATTTCACAGAAATCGACGAGGCCAGCGCTTCTTCCGAGACCGAGGAGGCGTCGCACAGAGCGAACAACTCCGCGAACCGGACGCAACAGAAGCAAGAGACCACGGCGACCTCCACTACCTCGGCGACGTCCGACGGCCAAGCTCCCCAGATATTCCCCTGGATGAGGAAACTACATATTAGCCATGATATGACTGGACCAGACGGCAAAAGGGCCCGAACTGCGTACACCCGCTATCAGACGCTAGAGCTGGAAAAAGAGTTCCATTTCAATAGATACCTCACCCGGAGGAGGAGGATAGAGATAGCCCACGCTCTGTGCCTCTCGGAGCGTCAGATTAAGATATGGTTCCAAAACCGGCGGATGAAATGGAAAAAGGACAATAAACTGAAGAGCATGAGTCTGGCTACCGCGGGCAGCGCTTTCCAGCCGTAGCCGTACCCCGTGCGCTGCTGCGTGGTGTGCAAGAGAAAATCACGAGGAAAAATAGGTCTCAAAACATTACTTACAGAGTACTGTACATCGCGGCACCTTTCGGCATGTTATGGATGTTTTAGGCATTTTAAAATTCTACTGTGGTACTGCTATAACGAAACGAAACGATTAGTGTTCACATGTTGTTCTTTTAATACTATGGTGACTATGATTTTGGcaagtaaataaaactgaagGGGAAAGAAGCTACCAATATACCGCCTGATGTTCTTGTTATGAATATTGTTTATGTGTCAAGTGCTATGTTAATGCTTTCTCGAGAGTTAGCATGTGAGCTCTTAAATGTTATAACTTATTTACCTATACACGTGTATACCTTTTGAGTTTACAGTTTAGAAACGCATCTGCCCTTGTATGAAGTGAAGCTCTAGTTTAGTGGCGGCTGCGGTACATTCAGCAGAAGCCTCTGTATATTTCACGCTCCTCTGTTTAATCATTGTCTAAATAATCGCGTTCGATTCGTCACGTGTTCAGATTCTCCGATTATTTtgagaaaggaagaaaaaaaaaaaaaaaaaaaaaaaaagctaatgtgTAAATAGCCCTCGCTAGGTTCTTGTACCC
>XM_043230282.1
TTTAAACAAATTCACCGGTGACCTTTAGGTGAAATCATGAGAAAAGCAGCCTTTAACGCACCTTTAGGCAACGCGGGCAACGCGCTAACCACGCGCTCTTCTGCGTAATTAGAAGGAAATTTCAGTACCTGAGGGGTAATATGTAAATGCGCGATACATGTATTAGTGTGCGTATGATATTTCAATACCGTttacgcatttaaaaaaaaatacaaaaaacaaattgtTTGCGCTAGGGATTCGGTTTCGCTTTTTTGCACTATTAAGAGGCCGAAAGTCGGCCACTTGGTTCCAAAATACTTCCTACAAAGTGAGAGGTGAGAAGGTTCAGCAGGTTTTAATAGATAACCAAAAGAGAAAGCTGACCTGTCGGCGCTGGTCACTCACCCTGAGAGACTATACAGCCTGGAGGGCTGAGCGACAACAAGACACATTTTCAGGTGGAGGTTCCTAATctcctctttaaaaaaatcaaataaaatcaaataaataacccCCAAAATCAGATGcaattaacataataataaaaaaaattgacacgCAAAATCGCATTAATTTATAcgtgcatttaaaaatcagGGCACATATGCATCTGCGCATGTTCCCAGAGCACCGTGGATGGACCAgaatattgtaaatatgttaCTTGTTAAATTCCGAACTTTTCCGAGCATCAAGACACTGCTAAGATATAAGTGTGAACGTCGGCCTGAGGTAATTAAACAGTGCCTTTCCGTCTTTAAGGCGTTCGAAAGTGAATGGAAGTTTGGTACAGATTTACATCACGCGCATACATGAAGCAGCATTTGGCGTTTGGTCAACAAACCGTATATCATCTCGGAGCATAAATCACGATCCCGCATTCCTTATATTCATTCCACAGAATTTTCTGTGTGAGGAGCTCATCTTTGTAACGCGTCTGGCGAAAAGTCACAGCGTTTCTCGGGTTGATCGAAATACGGTATCTGCGGCGAGACTAACGACGCAGTGTGTCGGAAAGCAGAGAAATGCAATTTGTTTGAATTTCCCCTCTTCAAACTGGATCTAGCGCGGTGCATATTTCATGCATTCGGTGTTACTACGAACGCTtcattgttcattttcattattctcATTAACTTGACATAAGGCACGATGTTCAATGCCTAAAGTGGCCGTGagatttcacaatattgcaatTGTTATCATTTCAATACCTGCATCATACTATATTCTCGCCATGTTAAAAcgtaatagtttatttttttattttattaatcgaTGTGACAGTTAACTGTGCGTTGATTTCTGCATATCAAGCAGCCCACGTTTCAACCTGTAGTTTCTGGGCAATTTCTGTATGCGTTAATGGTCAATAAATACACTAAACGTTATTAATATCGCGAACAAACTACAAAAGAGATCGGTTTTATTCCcattttaaatagataaaactAGGCTTGCGctctgaaaatatatttccagCGTGCAATAAATAGTATTCCCAGTAGGTGACGCTGTCCGCTTACATGCAGCAAATCCCTGCAAAGGGAGGAACACGTTGACTCGAGTCTAACGACTCCCCGTCTCGTCATCATTTGTAACCATAGAGCATGAATTACCTCTTGAAGTCATCAGTGAGAATTTACGACTGGTCAACAAAAGCACGTGATTCTCAAACGCACCCCCACCCCCATATTTGGCCGCATACATAGCAAAAACGAAGTACAGTGCATTGCtataattcattaatacatCATAAATCGTGAAGCACAGCGTTATAACGACCAAGATCTACAAATCAAGCCCTCTAAAACAACCTAAATGAGCTCTTACTTTGTAAACTCGTTCTCAGGGCGCTACCCAAATGGCCCTGACTATCAGTTACTAAATTATGGAACTAGCAGCAGCGCTATGAACGCCTCGTACAGGGACTCCGGCACCATGCATTCAGGCTCTTACGGCTACAACTACAATGGAATGGACCTAAGCGTCAATCGTTCAACCAGCACTGGCCACTTTGGGGCGGTTGGGGACAACTCCCGGGTCTTCCAGTCTCCAGCCCCGGAGACGCGATTCCGGCAGCCGTCAAGCTGCTCGCTCGCGTCTCCGGAGCCGCTGCCTTGTTCCAACAGCGAAAGCCTCGGACCCAAAGGCTCTTCGCCCCCTTCCGACCAAAGCACCACCACTGCGGGTAATAATCTAACCAACAACACACATTTCACAGAAATCGACGAGGCCAGCGCTTCTTCCGAGACCGAGGAGGCGTCGCACAGAGCGAACAACTCCGCGAACCGGACGCAACAGAAGCAAGAGACCACGGCGACCTCCACTACCTCGGCGACGTCCGACGGCCAAGCTCCCCAGATATTCCCCTGGATGAGGAAACTACATATTAGCCATGATATGACTGGACCAGACGGCAAAAGGGCCCGAACTGCGTACACCCGCTATCAGACGCTAGAGCTGGAAAAAGAGTTCCATTTCAATAGATACCTCACCCGGAGGAGGAGGATAGAGATAGCCCACGCTCTGTGCCTCTCGGAGCGTCAGATTAAGATATGGTTCCAAAACCGGCGGATGAAATGGAAAAAGGACAATAAACTGAAGAGCATGAGTCTGGCTACCGCGGGCAGCGCTTTCCAGCCGTAGCCGTACCCCGTGCGCTGCTGCGTGGTGTGCAAGAGAAAATCACGAGGAAAAATAGGTCTCAAAACATTACTTACAGAGTACTGTACATCGCGGCACCTTTCGGCATGTTATGGATGTTTTAGGCATTTTAAAATTCTACTGTGGTACTGCTATAACGAAACGAAACGATTAGTGTTCACATGTTGTTCTTTTAATACTATGGTGACTATGATTTTGGcaagtaaataaaactgaagGGGAAAGAAGCTACCAATATACCGCCTGATGTTCTTGTTATGAATATTGTTTATGTGTCAAGTGCTATGTTAATGCTTTCTCGAGAGTTAGCATGTGAGCTCTTAAATGTTATAACTTATTTACCTATACACGTGTATACCTTTTGAGTTTACAGTTTAGAAACGCATCTGCCCTTGTATGAAGTGAAGCTCTAGTTTAGTGGCGGCTGCGGTACATTCAGCAGAAGCCTCTGTATATTTCACGCTCCTCTGTTTAATCATTGTCTAAATAATCGCGTTCGATTCGTCACGTGTTCAGATTCTCCGATTATTTtgagaaaggaagaaaaaaaaaaaaaaaaaaaaaaaaagctaatgtgTAAATAGCCCTCGCTAGGTTCTTGTACCCGTTCATACGTGTGTATAGTTGTATTCCAAATATGTAATTGTATATTACTGGATCATGTTTATGTTCCAAAAAGGATGTAcatattgaacatttttattgtgatcGGTTGGCTATTTGTAGTAGGCAGAATGAacggcaaaaaaaagaaaaaagaaataaaaaagcgaTGTCATGTCGAACTGCCTGTTAGCATTTTgccaaaaaagctttttgtatttgtttgtagtttAACTTggagtaaaaaataaagttccTCATATTCAAATCTGA

Function


symbol description
hoxb5a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; mesenchyme; mesoderm; neural tube; and somite. Orthologous to human HOXB5 (homeobox B5).

NR:

description
PREDICTED: homeobox protein Hox-B5a-like

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA


RNA id representative length rna type GC content exon number start site end site
TU33382 False 1233 lncRNA 0.47 2 22724044 22725888
XM_043230282.1 True 3525 mRNA 0.43 2 22722022 22726158

Neighbor


gene id symbol gene type direction distance location
hoxb6a hoxb6a,hoxb6,LOC107585042,LOC107662387,LOC107582892 coding upstream 443 22719460 ~ 22721579 (+)
hoxb7a hoxb7a,LOC107740671,LOC107662388,LOC107717221,LOC107585088,LOC107687793,LOC107582958 coding upstream 9965 22707994 ~ 22712057 (+)
hoxb8a hoxb8a,LOC107662386,LOC107582957,LOC107585089,LOC107740672,LOC107687792,LOC107717220 coding upstream 15285 22703924 ~ 22706737 (+)
hoxb9a hoxb9a,LOC107585091,LOC107662432,LOC107717219,LOC107687790,LOC107582956 coding upstream 22851 22691178 ~ 22699171 (+)
hoxb10a hoxb10a,LOC107662435,LOC107740623,LOC107585092 coding upstream 32331 22685013 ~ 22689691 (+)
hoxb4a hoxb4a,LOC107740620,LOC107585041,LOC107662385,LOC107687779,LOC107582891 coding downstream 9781 22735939 ~ 22740671 (+)
hoxb1a LOC107687776,LOC107585038,LOC107717202,LOC107740618,LOC107662382,LOC107582890 coding downstream 53676 22779834 ~ 22783095 (+)
LOC122342153 c1qtnf6,c1qtnf6a,LOC107695119,LOC107723613,LOC107672153,LOC107583300 coding downstream 186408 22912566 ~ 22918961 (+)
cbx1a cbx1a,LOC107585039,LOC107662389,LOC107687782,LOC107710057,LOC107582894 coding downstream 357988 23084146 ~ 23090936 (+)
copz2 LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483,LOC106600844 coding downstream 377599 23103757 ~ 23114098 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 49111 22511428 ~ 22672911 (+)
LOC122341843 NA non-coding upstream 632091 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 987600 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 1085452 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 1085943 21635744 ~ 21636079 (+)
G22554 ddx5,LOC107695114 non-coding downstream 214089 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 363315 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 374786 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 388120 23114278 ~ 23116840 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 670343 23396501 ~ 23400922 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other upstream 174814 22546158 ~ 22547208 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other upstream 191962 22528989 ~ 22530060 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other upstream 385795 22268986 ~ 22336227 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 696111 21976509 ~ 22025911 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other upstream 745357 21975252 ~ 21976665 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other downstream 39489 22765647 ~ 22770602 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other downstream 173175 22899333 ~ 22908135 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other downstream 432061 23158219 ~ 23163716 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 612221 23338379 ~ 23343640 (+)
LOC122341898 LOC107662363 other downstream 617806 23343964 ~ 23361942 (+)

Expression



Co-expression Network