hoxb2a (hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781)


Basic Information

Item Value
gene id hoxb2a
gene name hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22765647 ~ 22770602 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU33399
TTTATAGAAAAAAAGGTACGGGTAATAGatgactaaacatttttttcgcTTGTTGGATTTCCATCGATTattgcaggggaaaaaaaggagcTGCGTTGCTGTCTGTGCTCATTTATTAACAACAGAGTTGAACGTAGCATGCCCAGGCTTTAGACAAATCCAGACAAAGAAATTCAGAACCAACCTAATATTACAGCGGCAGTGATAACATACAATAACTTCCAttgcatgcacaaaaaaactataCCAACCTTTGACTTTCTTAACATGCGCTTGAACAAACATTTTAACTCTTACTGTGGctacataataataaagacaTCAAAGCTATTATCAGACTAAgataatttttgcattttaactaATACCCACACAGAAAGTACAG
>XM_043230271.1
CGCGCCTGCAATGGTCACGTGAAGGGGGTCCAATAAAATCGTCCAACGCTCTTCTTGCTGGTTATGGAGTTAAAACGAATGATTGCAAATAATCTCAAGTTTATAGAAAAAAAGGTACGGGTAATAGatgactaaacatttttttcgcTTGTTGGATTTCCATCGATTattgcaggggaaaaaaaggagcTGCGTTGCTGTCTGTGCTCATTTATTAACAACAGAGTTGAACGTAGCATGCCCAGGCTTTAGACAAATCCAGACAAAGAAATTCAGAACCAACCTAATATTACAGCGGCAGTGATAACATACAATAACTTCCAttgcatgcacaaaaaaactataCCAACCTTTGACTTTCTTAACATGCGCTTGAACAAACATTTTAACTCTTACTGTGGctacataataataaagacaTCAAAGCTATTATCAGACTAAgataatttttgcattttaactaATACCCACACAGAAAGTACAGTCGCACGAACATGAAGGTATAGTCTACGAACGTAAAATATCAAAAGtcaaatcatgcatttttagactggatggatagatgattaCAACATAGGATGTATCTTAAGAAGTGAGTTAAAACCCGCCGTCCTCGGATGATATAAATCCATTTAACGCAAACAGCTGCTCAAATTGTCCCAGAACGTTAACATTTCTTTCCAGTTGAAAAAAGCAtcacttgacatttttttttcatgcaagtACTGTCCGAAAAACGAACACAAAAGCGCgtgaacaataaataaaatagagatTATGAGCGCGTCCCAGTCCCTCGCAGTCAGCTCCGTTCTGTGAGGAGGCCCTTTTAGATTGACCCCTTTCCGAAATGCCCAGAGCTCGCTTtgtatttcctttaaaaattccCAGACACCCACACAGGGTTACAGCCTATCTGTTTCCACTATTCTTTTAGGCGAGAAAAACGGCGAGACGAAAGCTCGATCGGGCTGCAAAGCCGAAACACCGCGAAGCCGAATTCAGATCAAGGCTAGCTGCAACACAGTTCAGTTTTAATCTCTAACCCTATCGATGCGAAGCGCCAGCAGAACGTTTccaatgcagaaaaaaaatatttcttggtggaaaaaaaaaatatccacaaATCTACGAGGGAATAATGGGGGTTTTCTTTGTTGTGATCTTGGAGGAAAAAGGCGAATTCTTGAGGGTGGCTGCTGTCAAGCGCTTTGCCGGCGAAAAGATTGATCACCCCTGCTGCCTCTCCACTCCTGCTCTAAAAATATCTACCCCCTTTCCCCATTCGTTTTAAACTTTGACGCAACcaattttgcttagttttttcaCCCGCTAACATTATATCGCTGCTTTCTCCGTCCGAGGCGCGATAGAAATTCAAGTCAACACGTAAGCGATTTCCATTCTGAACGCGACCTCGCGATGAACTTTTGGTTGTTGTCAGAGTCAACAAACGTTTAACGCACACAGCCGGCGACTATTTTTCGTACCGCGGCCTATTGCGTTTCATAAACGAACAATATATGTACAGACATATTATTTGACTATGATTCTATAACCTGGATTTAGTGCAGACTTACGCGCTTTAACGTCCCAGTTTTCAGAAATTCTTCGGAGGccgtgtttaaaaaaaattacaaaaataaaattaaaggcAAACCcccaaataatttatttgattcgTAATGGCTGGGAATCTCCCATTCGGCAAAAGTGGCGGACACTCTCAACATCACTCTCGCGCACCCTTATTTATGTGCTtgataaaagaaatatttctacACCTACGTGCATCTCTTGTCTGTTGCTCTTGTCAAAAGTTTTAAGATTAATGACCCTTGATTGTAAATACGCAAGAAGCCATATTGTGGATGTACTTATCAGGCAAGGCCTGTGAATTACATCACCGGCAGTTCTGCATTCGGCTTGTTATTGTCTAACACGAGAGGCCTGCGCTTTACCTCTAACGATGAAACAGAACTGACCGGACACATGGCAACCGAGagcctttttaaaattattatttcgtCCGTGTTACAATAAGAACTGAATTATAATAtcctgctgtattttttttttatcaattcagACAAATATTGCTTTCTTTTGCCACCAGGCCCCGAATTGCGATTGGCTGAGACGAGTCACGTGACCAGGAATTGGCTGCAATTTCGCCCATAGTCTTCAGTTTAGTAGACCCTGGTCCCCATACGCTAGTAATATCACCAATATACACAATTATTAAAGCCCGCAAATGCCGCCATAGCAGGAACGCAAAATAAATCCTAGGCTTTTGGATGTTATTTTTTGCGTATGTTGGTGTCGCTGGACGCCCTTTTTGCCCAGGCGAAGCgatgaattttgaatttgagaGGGAGATTGGGTTCATCAACAGCCAGCCTTCCCTTGCAGAGTGCCTGACGTCTTTCCCCGCTGTCCTGGAGTCATTTCAAACTTCATCAATCAAGGACTCGACAGCAATTCCACCTCCTTTCGAGCACACCATCCCTAGTCTGAGTCCCTGCACAGGCAACCAGGCGCGACCGAGGAGCCAAAAGCGAACTGCCTCCAATGGCCTCCAGCTCCGGACGCAAACAGCACCGCCGACGCAGCACCAGCAAGGCCCGGCCCCGCTGTCGGGTGGCGCGCCCCTGGCCCACGAGTTCCCAtggatgaaagagaaaaaatccTCGAAGAAGTGCCCCAAGCCCGGAGCCACTGCTGCTGCGGCAGCAGCCTCCCCTTCTCAGGCATCCTCCGGCTACACGACCGCGGGATTGGAGTCCCCGACAGAGGCTCAAGGCGGGCTGGATAATGGCAGCGGTTCGCGGAGGCTGAGGACCGCATACACCAACACGCAGCTACTTGAACTGGAGAAGGAGTTTCACTTTAACAAATACCTCTGTCGGCCCCGGCGCGTAGAAATAGCGGCGCTTTTGGATCTAACCGAGCGCCAAGTCAAAGTGTGGTTTCAAAATCGACGCATGAAGCACAAAAGACAAACGACGCACCACCGGGACGGGCAAGAAGGCGAGCCCAGCGGTTTCGAGCTCCTGGAGGGAGCCGACGCCGCCTCGCCGTATTCGAGCCAGTCGTTGGAAGCGTCTGGCTCCGGTTCCGCGGCAGCCTCCGAGAGCGAGGCTTGCCCGACGGCCGCCTCCTACACGAGCAGCGCGGACAAAAGCCAGCCCACGCCCGAAGAGGGCCAGGCGAACCAGTCGGAGCCTGCATCTGTTCCTGACACAGCGGTTCACTCCCCCCCGTACCCGACGCCTACTGCAGATAACCCCAGCACAATGGCCGAGGGCCGAGCAGCTGGGCCGGAGCATTCGTTCACAGAGCCGCAGGACGCCCCCTCTCTTCCCGATTTGAATTTCTTTTCGACGGACTCCTGCCTACAGATTTCGGACGCTTTATCGCCGAGCTTGCAGAGCTCGCTGGACAGCCCAGTCGACTTCTCCGAGGAAGATTTCGACTTGTTTACGAGCACCCTTTGTACTATAGATCTGCAGCATTTACAGTTCTGAACTATCACGACATCCCAACGCACACGAGAACAATCGAACTCGATCCGATTGCAGTGTCCCGAATCCTCCTCGACATTCCTATAATAAGACATTAACACGTCAAACGAGACAGCTCCCTAAACcgttctttttaaaaaaaaaaaaaaaaaaaaacaaaaacaaaagaggcgTGAAACGACGCCTAAAAGGAAATAAATTGtccattattttgaaaatacgaTGATGTAATCTTTTTGAATACACATCGGGATGGCCCCTGTCGAAGTTTCAGGTATTTTATTGCCTTCTGATTTTCGGGTTTTAGTTTATGTCGACTAACAGATGAATGGTTGCGGACTTTTTCAGTGAAACTCAATCATTGGAATCTCAGGAATTGTGTCTGACATAAGAGTAGTTGAACTGCTTTTAGAAATTCTCCCGAGGCGGGCGTCGTCCCCATCGAATAATTTTAGAACTAGTTTATTTATTGAGATTCTTTAATAGtaaatttcaaatttatttattgtacgtTATTTTCAtagctgaaataataaaaaaaataataaaaatacacataaattgGTGGAGCGAGTGTGGTTGATTTTC

Function

symbol description
hoxb2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; hindbrain neural plate; neural crest; and pharyngeal arch. Orthologous to human HOXB2 (homeobox B2).
hoxb2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-B2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09302 HOX_2; homeobox protein HoxA/B2

RNA

RNA id representative length rna type GC content exon number start site end site
TU33399 False 385 lncRNA 0.35 1 22765746 22766130
XM_043230271.1 True 4112 mRNA 0.45 2 22765647 22770602

Neighbor

gene id symbol gene type direction distance location
hoxb3a hoxb3a,LOC107687775,LOC107582888,LOC107740615,LOC107717222,LOC107662380,LOC107585040 coding upstream 111 22713873 ~ 22765536 (+)
hoxb4a hoxb4a,LOC107740620,LOC107585041,LOC107662385,LOC107687779,LOC107582891 coding upstream 24976 22735939 ~ 22740671 (+)
hoxb6a hoxb6a,hoxb6,LOC107585042,LOC107662387,LOC107582892 coding upstream 44068 22719460 ~ 22721579 (+)
hoxb7a hoxb7a,LOC107740671,LOC107662388,LOC107717221,LOC107585088,LOC107687793,LOC107582958 coding upstream 53590 22707994 ~ 22712057 (+)
hoxb8a hoxb8a,LOC107662386,LOC107582957,LOC107585089,LOC107740672,LOC107687792,LOC107717220 coding upstream 58910 22703924 ~ 22706737 (+)
hoxb1a LOC107687776,LOC107585038,LOC107717202,LOC107740618,LOC107662382,LOC107582890 coding downstream 9232 22779834 ~ 22783095 (+)
LOC122342153 c1qtnf6,c1qtnf6a,LOC107695119,LOC107723613,LOC107672153,LOC107583300 coding downstream 141964 22912566 ~ 22918961 (+)
cbx1a cbx1a,LOC107585039,LOC107662389,LOC107687782,LOC107710057,LOC107582894 coding downstream 313544 23084146 ~ 23090936 (+)
copz2 LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483,LOC106600844 coding downstream 333155 23103757 ~ 23114098 (+)
LOC122333434 LOC107710041,LOC107740651,LOC107585073,LOC107662378,LOC107687794 coding downstream 358182 23128784 ~ 23135038 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 92736 22511428 ~ 22672911 (+)
LOC122341843 NA non-coding upstream 675716 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 1031225 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 1129077 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 1129568 21635744 ~ 21636079 (+)
G22554 ddx5,LOC107695114 non-coding downstream 169645 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 318871 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 330342 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 343676 23114278 ~ 23116840 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 625899 23396501 ~ 23400922 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other upstream 39489 22722022 ~ 22726158 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other upstream 218439 22546158 ~ 22547208 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other upstream 235587 22528989 ~ 22530060 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other upstream 429420 22268986 ~ 22336227 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 739736 21976509 ~ 22025911 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other downstream 128731 22899333 ~ 22908135 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other downstream 387617 23158219 ~ 23163716 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 567777 23338379 ~ 23343640 (+)
LOC122341898 LOC107662363 other downstream 573362 23343964 ~ 23361942 (+)
LOC122341907 NA other downstream 632839 23403441 ~ 23408814 (+)

Expression


Co-expression Network