G22795 (ddx5,LOC107695114,LOC108432077,LOC107583258,LOC107723600,LOC107602339,LOC103024726,LOC103143670,LOC106937022)


Basic Information

Item Value
gene id G22795
gene name ddx5,LOC107695114,LOC108432077,LOC107583258,LOC107723600,LOC107602339,LOC103024726,LOC103143670,LOC106937022
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23671394 ~ 23749009 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU33831
CACATACATGGGTTTTTGAGTTCCCTAATAAGTTGTATAAAAGGACTGAGGAGCAAACCACTCTTCAGATGCTGCTTGTGTCTGATGCCCTATCGAGGGACGCCTTACAGCATCTCCAACATCGCTACTTAGAGTTTGATTATAGAAGTCTAATTTagatgatttgaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaatcctgcacaGCAGACTCTGGGACGCTTGTGACGGCATGTACATTTTACAACCTGCTCTGAAGAAATAAAGTTACATGAACGGAACAGTTAAAGATTCAGATTAGCAAACAAAACTTTACTGAGGGAACGCAGGTGGAGCCATGGGGAACGGCATGGACTGTGGCATCTGTTGGGGGTTGAAGGGGAACGGTGGAGGGTGGTTCATGCCGTTCTGGACAGCCCCTTGGTTGGGAGCAAACTGCTGGTTCTGATAGCCTTGGTTTCCGTACCCACCAGACTGATTGCCGAGGTTACCCTGTCCGTTATTGCTGTAACCCCCGCTAAAGctgctactgctgctgctgctattGTAACCGCTAGATCCATTTTGAGTTTTGTTTCCAAACACTTTCTTCTGCCCATATGAGTCACCGTTACGGTTATCCTGGCCGTAGCTGTTGAAGTCCCGTCTGCCGCCAGAGTGGCGGTCCCGACGGTCGTCCCTATACCCTCCACCTCGACCTCCCCTTGAACGACCTGGAAGAGAAATCGGAGTTACACGGGGATTCGCAAACCGGCCAGAACCAAGTAAACAAAGCTGTACCCTTAAAAGAGAGATTATGAAGGACAAAACTGGCTGAGGGTAAAGCACAGCTCTTGTATCTCACCAATTGGATTTACCTCCTCTGTCTTCGGCCATTTGGATGAGCTTGGGGTTTATGGCTTGGTTGGCCTCACGGAGGACCGAGACGAGGTCGTGAGCCTGTTTCATGTTGTTGGGCGTAAAGAAAGTGTAGGCTGTGCCGGTTTTCTGACTGCGAGCCGTACGGCCAATGCGGTGAATGTAGTCCTCGGAATTGTTGGGGTAGTCATAGTTAATGACAAATTTGACGTCTTCCACATctgttaaaagaaaatggaCGCGCCATGGCAGGAGTAGAGGAGTGCGGGTGCACACCGCCATAGCCGCGAGGATAGGAGGCGTTAGCAAGGGAAACAATGAACGATAGGTCATCGACTTACCATGCTGAGGAAAGGATGGTTAAAAATCAGGATCCAAATGACAATTTACAATGTCCTCTATTAAAAGCGACAGGACAAACTGCTGCATCTTGCCAAGACTCAACTCGCTCAAAAAAA

Function

symbol description
ddx5 Enables mRNA 3'-UTR binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DDX5 (DEAD-box helicase 5).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33831 True 1324 lncRNA 0.47 2 23671394 23749009

Neighbor

gene id symbol gene type direction distance location
napsa zgc:63831,LOC107695135,LOC107748792,LOC107583260,LOC107672139,LOC107723590 coding upstream 10049 23655511 ~ 23661345 (+)
st13 st13,LOC107695132,LOC107672142,LOC107602335,LOC107583261 coding upstream 26854 23636361 ~ 23644540 (+)
cbx7a LOC107695130,LOC107748788,LOC107583303,LOC107602332,LOC107672137,LOC107723608 coding upstream 83766 23582431 ~ 23587628 (+)
mrtfaa LOC107695127,LOC107723606,LOC107602328 coding upstream 191103 23444986 ~ 23480291 (+)
slc25a17 slc25a17,LOC107748783,LOC107672147,LOC107709637,LOC107695117,LOC107602302 coding upstream 227320 23438398 ~ 23444074 (+)
trnas-aga_1 NA coding downstream 87090 23836099 ~ 23836180 (+)
mchr1b mchr1b,LOC107719342,LOC107672125,LOC107672690,LOC107602308 coding downstream 124122 23873131 ~ 23877674 (+)
LOC122342045 mfsd6l,LOC107719337,LOC107583315,LOC107728393,LOC107563357,LOC107703882 coding downstream 302913 24051922 ~ 24056391 (+)
zgc:171844 zgc:171844,LOC107672688,LOC107719339,LOC107583313,LOC107703875 coding downstream 309684 24058693 ~ 24071844 (+)
tom1 LOC107672685,LOC107583252,LOC107719328,LOC107563358,LOC107703898 coding downstream 334977 24083986 ~ 24094610 (+)
G22758 NA non-coding upstream 25228 23578476 ~ 23646166 (+)
G22757 NA non-coding upstream 93153 23574898 ~ 23578241 (+)
G22754 NA non-coding upstream 108148 23563040 ~ 23563246 (+)
LOC122341920 LOC107672134,LOC107602299 non-coding upstream 256485 23412813 ~ 23414909 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding upstream 270472 23396501 ~ 23400922 (+)
G22802 NA non-coding downstream 5513 23754522 ~ 23755997 (+)
G22816 smurf2,LOC106937021,LOC107104615,LOC106934056 non-coding downstream 9734 23758743 ~ 23759342 (+)
G22833 NA non-coding downstream 53167 23802176 ~ 23805489 (+)
G22857 NA non-coding downstream 121786 23870795 ~ 23871177 (+)
G22863 NA non-coding downstream 137233 23886242 ~ 23886606 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other upstream 239628 23424621 ~ 23431766 (+)
LOC122341907 NA other upstream 262580 23403441 ~ 23408814 (+)
LOC122341898 LOC107662363 other upstream 309452 23343964 ~ 23361942 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other upstream 327754 23338379 ~ 23343640 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other upstream 507678 23158219 ~ 23163716 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other downstream 290893 24039902 ~ 24051913 (+)
G22958 NA other downstream 346015 24095024 ~ 24097159 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other downstream 685046 24434055 ~ 24439463 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other downstream 697869 24446878 ~ 24449289 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other downstream 776271 24525280 ~ 24530769 (+)

Expression


Co-expression Network