LOC122342064


Basic Information

Item Value
gene id LOC122342064
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24201105 ~ 24203008 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34123
GACCGATCACTCTGGTATGTgtctaatattattatcattattcttattaatattattattatattttaggcTAGTTATTGTATATACAATTTTCAAGTTATTGTACATTGTTAATTCATAGTTGTAAATacgcataattttttttatttatgcagttcTATAGACAGCACTAAATGCACATGTCTGTTTATAGGTCCTCTGTTCTATTCCagatgcatactttttttttttccttttctttagtcATGTTTAAATGTTCTTGTATTTCCttttcatatatgtgtgtgtaccgAGAGCTGGCACATAAACTGTAAAACCACAACAAGTGGTTACAGTGTTTTTGCGCACACTTGGCGAATAAAGCTCCTCCTGATTCAGATTCTAACCTAAAATGCTTTACAGTCCGTTTAACTTGCAGTGTTTGTTCTTGTTATAAAAtcaacacaattaaaaacaaagtaatttCTATATACGTGTCTTACCAGAAATAAAACTTTCAGAAGAGGAAACCGAACCAGTGTCTGTGATCACCCGTGTCCCAAGCTCTGTCCATCCTTGGTTTGAGAGTTATGGAGAAGATGATGGAGTTTTGTATGGAGGGGAGCACATCTTCACTTTCACTCTCCAGGCATCTGAAGGACAAGACTTTCCCAAAAGGCCCAAAAAACTGTGATGGACATTTACTTCCAGTTCATTTGTTACACctgtaatgaaaaaatgtatcaagcacttgataatgttattttagcaaCACTTATGAATATTCAGGCTTTTTgagtattcatttttattgcttgcaaacttttttttaccattttaaatcaCAGATTTAGATCAACCGTGCTGTTGTaggcaacaaaaacaacactgagcTTTAGCAATGTGCATAAAAACTGGACAATGGTGACGTATTTTTGTAGGCCACCCCCCGAAGTCCCTGCTTCCTATGACCAAAACCTCACTGGACTCTTCCAACTGACTTTTGGACTATTGCAGAGAATTGACAAAGGTTTCTAATTCTTGCATTTTGTTTATCGTGATAATCTTCACAAATTGCAATGAGCAGAAGTAAAAAGCTGTAAGTGTGAGCTATAAATGAACTAAACCGTGGTCGCATGCCTTCACCGTCACCATCACGATCTCCTCACGACTGAAGTCTTTATAATTAGTCCTTGGGTTTGCTTAGTTTTCTTTGGTTTAATGCTTTAGAGCAGGGGCGGCAACCTTTTTTATCAAAAGAGCCACTTTGTTTCATGTTGCAAAAGTAAGTTTGTCGGGTTGGCGTAGTTTTTCCATATCACTCCATTTGTGCTCTTTAGCGAGAGCAGCCCTCTGACGGGCGACTTCTTCAAGATCCGCTGACAGGGATTTGAACTTGTTACCCCCAAAAGCAGATGCAAAAGCAGATGTGCACGCTGCATTAAACTCTCTATTTTCTTCCGACACTTTTCTTTTTGGGCTCTTTTCATGCTTACAGTGGTAGGGGTTCCGCGTGGTCCCGCCAGCAAGTAAAGGCGACGACTGCTGACGTTGATGTGACATATATTTTAAGtgacaaattataaaaaaaaaaaaactttattagatGGTATCAACTAAAACCCCAGAGGATTTGTGCAACAGAGCCGCAGGTTGCCTACCCCTGCTTTAGAGTATTAAAGCACTTTGGTCCACATTAAAGGTTccgatgtttatttttttgtattgccAATTTACAAACGCTTTTGGGaatttttcatgtaaaatgtattttagatcaTTATTTCCTTTGTTAAATGGCACAGCTGAAACTGTAaggaatgtatattttaaatgaatgtaaataaaaa
>XR_006250517.1
GACCGATCACTCTGAAATAAAACTTTCAGAAGAGGAAACCGAACCAGTGTCTGTGATCACCCGTGTCCCAAGCTCTGTCCATCCTTGGTTTGAGAGTTATGGAGAAGATGATGGAGTTTTGTATGGAGGGGAGCACATCTTCACTTTCACTCTCCAGGCATCTGAAGGACAAGACTTTCCCAAAAGGCCCAAAAAACTGTGATGGACATTTACTTCCAGTTCATTTGTTACACctgtaatgaaaaaatgtatcaagcacttgataatgttattttagcaaCACTTATGAATATTCAGGCTTTTTgagtattcatttttattgcttgcaaacttttttttaccattttaaatcaCAGATTTAGATCAACCGTGCTGTTGTaggcaacaaaaacaacactgagcTTTAGCAATGTGCATAAAAACTGGACAATGGTGACGTATTTTTGTAGGCCACCCCCCGAAGTCCCTGCTTCCTATGACCAAAACCTCACTGGACTCTTCCAACTGACTTTTGGACTATTGCAGAGAATTGACAAAGGTTTCTAATTCTTGCATTTTGTTTATCGTGATAATCTTCACAAATTGCAATGAGCAGAAGTAAAAAGCTGTAAGTGTGAGCTATAAATGAACTAAACCGTGGTCGCATGCCTTCACCGTCACCATCACGATCTCCTCACGACTGAAGTCTTTATAATTAGTCCTTGGGTTTGCTTAGTTTTCTTTGGTTTAATGCTTTAGAGCAGGGGCGGCAACCTTTTTTATCAAAAGAGCCACTTTGTTTCATGTTGCAAAAGTAAGTTTGTCGGGTTGGCGTAGTTTTTCCATATCACTCCATTTGTGCTCTTTAGCGAGAGCAGCCCTCTGACGGGCGACTTCTTCAAGATCCGCTGACAGGGATTTGAACTTGTTACCCCCAAAAGCAGATGCAAAAGCAGATGTGCACGCTGCATTAAACTCTCTATTTTCTTCCGACACTTTTCTTTTTGGGCTCTTTTCATGCTTACAGTGGTAGGGGTTCCGCGTGGTCCCGCCAGCAAGTAAAGGCGACGACTGCTGACGTTGATGTGACATATATTTTAAGtgacaaattataaaaaaaaaaaaactttattagatGGTATCAACTAAAACCCCAGAGGATTTGTGCAACAGAGCCGCAGGTTGCCTACCCCTGCTTTAGAGTATTAAAGCACTTTGGTCCACATTAAAGGTTccgatgtttatttttttgtattgccAATTTACAAACGCTTTTGGGaatttttcatgtaaaatgtattttagatcaTTATTTCCTTTGTTAAATGGCACAGCTGAAACTGTAag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34123 True 1829 lncRNA 0.37 2 24201105 24203008
XR_006250517.1 False 1326 lncRNA 0.40 3 24201105 24202976

Neighbor

gene id symbol gene type direction distance location
LOC122342039 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding upstream 38863 24156356 ~ 24162242 (+)
LOC122342038 mcm5,LOC107703892,LOC107670920 coding upstream 52746 24142816 ~ 24148359 (+)
LOC122342047 gcat,LOC107703894,LOC107670921 coding upstream 58984 24138543 ~ 24142121 (+)
tom1 LOC107672685,LOC107583252,LOC107719328,LOC107563358,LOC107703898 coding upstream 106495 24083986 ~ 24094610 (+)
zgc:171844 zgc:171844,LOC107672688,LOC107719339,LOC107583313,LOC107703875 coding upstream 129261 24058693 ~ 24071844 (+)
LOC122341365 NA coding downstream 166205 24369213 ~ 24374564 (+)
gcat gcat,LOC107703894,LOC107670921 coding downstream 318020 24521028 ~ 24524600 (+)
foxred2 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding downstream 336315 24539323 ~ 24545214 (+)
ankrd54 ankrd54,LOC107670919,LOC107559232,LOC107563363,LOC107719341,LOC107728844,LOC107703879 coding downstream 342403 24545411 ~ 24549093 (+)
hmgxb4a LOC107658693,LOC107758107,LOC107728447,LOC107703878,LOC107563362 coding downstream 346219 24549227 ~ 24557112 (+)
LOC122342066 NA non-coding upstream 3076 24196858 ~ 24198029 (+)
LOC122342068 NA non-coding upstream 77226 24122208 ~ 24123879 (+)
G22963 NA non-coding upstream 80827 24116920 ~ 24120278 (+)
LOC122342058 NA non-coding upstream 93353 24100850 ~ 24107752 (+)
G22957 NA non-coding upstream 106510 24081566 ~ 24094595 (+)
LOC122342061 NA non-coding downstream 6566 24209574 ~ 24210462 (+)
LOC122342065 NA non-coding downstream 9339 24212347 ~ 24214974 (+)
G22982 NA non-coding downstream 30758 24233766 ~ 24236075 (+)
G22988 mfsd6l,LOC107719337,LOC107728393,LOC107583315,LOC107703882 non-coding downstream 65418 24268426 ~ 24449870 (+)
G22990 NA non-coding downstream 135863 24338871 ~ 24339654 (+)
G22958 NA other upstream 103946 24095024 ~ 24097159 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 149192 24039902 ~ 24051913 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other upstream 479386 23709503 ~ 23721719 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other upstream 769339 23424621 ~ 23431766 (+)
LOC122341907 NA other upstream 792291 23403441 ~ 23408814 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other downstream 231047 24434055 ~ 24439463 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other downstream 243870 24446878 ~ 24449289 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other downstream 322272 24525280 ~ 24530769 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other downstream 518518 24721526 ~ 24811577 (+)
LOC122342019 LOC107758123 other downstream 780273 24983281 ~ 24993218 (+)

Expression


Co-expression Network