G23002


Basic Information

Item Value
gene id G23002
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24557711 ~ 24558261 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34149
GACAGAAGGAGAAGGATGATTCGTCACTCCAGAGAACGtgtctccactgctctagagtctAGTATGTATGACCTAGATAGAGGTGCTCGGacatggaaacccattccatgaagctctctgcacATTGTTCTTGAGATAATCTGAAGCCCACATGATGTTCGGAGGTCTGCAGCAAATGACTACAGAAAGTTGGTGACCTCTTCTCACTATGCGCCTCAGCATCCTCTCACCCCGCTCCAAATACTTAGAGTTGCTGTCATTCCCAAACGCTTCTAcattcttataatacagctgtAGGttgattgtgaaatatttaggaggaaatttcacgactggatttgttgcacaggcGGCATCCAGCTCCAAGCTAGCATtaactgagctcctgagagcgactcattcattcacaaatgtttgtaaaaacagtctgcatgcctaggtgcttgattttattttatacctgtggccatggaagtgacTGGAACACCTGATTTTGATcatttggatgggtgagcaaATACATTTGccaatatagtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34149 True 551 lncRNA 0.44 1 24557711 24558261

Neighbor

gene id symbol gene type direction distance location
hmgxb4a LOC107658693,LOC107758107,LOC107728447,LOC107703878,LOC107563362 coding upstream 599 24549227 ~ 24557112 (+)
ankrd54 ankrd54,LOC107670919,LOC107559232,LOC107563363,LOC107719341,LOC107728844,LOC107703879 coding upstream 8618 24545411 ~ 24549093 (+)
foxred2 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding upstream 12497 24539323 ~ 24545214 (+)
gcat gcat,LOC107703894,LOC107670921 coding upstream 33111 24521028 ~ 24524600 (+)
LOC122341365 NA coding upstream 183147 24369213 ~ 24374564 (+)
si:dkeyp-69e1.8 LOC107758106,LOC107658694,LOC107703890,LOC107728849,LOC107563364,LOC107559220 coding downstream 485 24558746 ~ 24562589 (+)
s1pr5a s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470 coding downstream 56338 24614599 ~ 24618241 (+)
LOC122342023 rln3a,LOC107658697,LOC107758104,LOC107559241,LOC107568237,LOC107696003 coding downstream 209368 24767629 ~ 24769271 (+)
il12rb2l LOC107758123 coding downstream 213030 24771291 ~ 24781610 (+)
LOC122342030 LOC107658707,LOC107559242,LOC107728516,LOC107695967 coding downstream 257612 24815873 ~ 24828439 (+)
G22968 NA non-coding upstream 40713 24133726 ~ 24516998 (+)
G22988 mfsd6l,LOC107719337,LOC107728393,LOC107583315,LOC107703882 non-coding upstream 107841 24268426 ~ 24449870 (+)
G22990 NA non-coding upstream 218057 24338871 ~ 24339654 (+)
G22982 NA non-coding upstream 321636 24233766 ~ 24236075 (+)
LOC122342065 NA non-coding upstream 342737 24212347 ~ 24214974 (+)
G23005 NA non-coding downstream 4551 24562812 ~ 24563127 (+)
G23004 NA non-coding downstream 4985 24563246 ~ 24563895 (+)
G23011 NA non-coding downstream 54265 24612526 ~ 24612751 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding downstream 56906 24615167 ~ 24673712 (+)
G23013 LOC107658701,LOC107758126 non-coding downstream 82319 24640580 ~ 24650704 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 26942 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 108422 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 118248 24434055 ~ 24439463 (+)
G22958 NA other upstream 460552 24095024 ~ 24097159 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 505798 24039902 ~ 24051913 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other downstream 163265 24721526 ~ 24811577 (+)
LOC122342019 LOC107758123 other downstream 425020 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 788523 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 853657 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 966048 25524309 ~ 25569403 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G140762 NA non-coding NC_053125.1 CM020922.1 2824313 ~ 2824618 (-)
mexican tetra (Astyanax mexicanus) G140237 LOC108430268 non-coding NC_035912.1 CM008315.1 9885190 ~ 9887985 (-)