G23014 (ldlra,ldlr,LOC107758126,LOC107658701)


Basic Information

Item Value
gene id G23014
gene name ldlra,ldlr,LOC107758126,LOC107658701
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24615167 ~ 24673712 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34166
ttttttttttttttttttttttTGAAATCTTCAAATAGTTTATTTCAAGTTAGATTTACACACAGGTCAAGAACGCTCATGAATTAATTCTCAGAAAATGCATCACTAGATCAATTAACCAACCAGAATGTACAGAAAttagtaaaaaattatatatgtgtgtactttgtatattatgtatagttattatgtatattattgtatatttattacatataaatatacccacaaacaatatatatttgtaaaacatgtacatgtatatttatattcatatatgtttaatataaacaattaattaatgtatttatatatacataaatatacacattgcacacacataaattagtacacaaaaacttttatttttgacgCGAATAATCGCAATTCATTGATTGGCAGCACTAacagaaacaattttttttactgtacatagcaaaaaataaaagaaaaaaagacaattatcAGCCAAAGATCTAgattcatgaaaataaatacaactctTCTTTATATACAATACTgcataattaaaacacaaacgctatgtatatgcaaatgcaataataaacatatttacatacactATTTACACATTCACAGTGAGAATGTAAAACAGATGTCACACAAGCTTGACTACAAAAcgtttgtaataaaaatgaaagacattCTCTGACTCCCTGAATAGCATCTGGTATGAATCATCCACATTTTCACTGaagtaaaatcattaaaaaaaaaaaatcactggaaTCATTGGCTCATATAACGAGGAACTTTATAATAGCAAAAAAAGTAACTTCAGTATCAGTACTGCATATGAGAAAGCAACCAGGTGCTGTTGGACAAAGTCTTTTTTCCATGAACTTCCGTTATCAGAAGTAACTTTGACCattgtggcaaaaaaaaatcttgatgaCTGAAATGGTGTAAACAACGGCATATAACATAAGGAAAACCGACTTTGCACATCTCTTGATAGAGTCTCTTTTGCATACATTGAAAGTACTGCATCTGTAATTAACCTAAGAATTAAATTAGACCAGGTAAATCACGAACGGTTGTttggaatgaaaaaaatagcatgcaGTGTTCGTTTTTTAATCCTAGACAAAAAAGAAGAATCTTTAAAATGTACCAAtacatacaatatttacaataatttatcaGACAATTTATAGTGACaataaaaccttaatttttccttttaagtgctattaaaatatatctatattcatatgtttgcatgattttatataaagtgAAAAACTAAGCAGTCTTGACAGCTGAGGTTGTTGTTGTCTGAGGTTTTTGGTGTTTGGTGTTTTTCTCTTGCATCTGCTttggcttgttttgttttttttttgcatcagatGCATTGTGTGAAAAGGCAGTTTTTATCTCCCCCGTTCCTCAGATGTTGTTTTACTGCAGAACTGACCTCCAAGTAGAAAAGACATCCAATATGGCTCTCGTCTTGAAACATCAGTTTTGGCATGGGCTTTAATGTCAACGTCATATTTCATCATCGATGCTAACAACCTGTCTCTGTGAAAGCAAAATAAGACCATCGGTATTAGACCAGACAGCTGTCTACATAGGCTTATTAGTAAATGGATAAAGTTAACAATGCTTCAGGACATTAGCTAATACGGCTAACATGAGTATTGTCAGTagtcagtaaatgtttttatatcgTACCTGTGGGTAAAAATAGCCATCAGAACTACCGTTTCTGCATAGATGCACCTGGTCCTCTGTGGTCTTTTGATAAACTGGGTTGTCAAAGTGAATGCTGTTGGTATTTTTCTGACGCCACTTTCTCCAGAACAGCACAGCACCACCCACAATCAAACACAGGATCGCTTTGAAAAGATGGGACAAGATCTTTCAATATATCTGTTACATGTTGATTTATGCCTACATATTGCATTAAAACGCTCCCTTTCTTTGTAACGCACAGGTTTTCCGAACGctacacattttttattgcttgtttaAGCATTTGCATCGAAGCACTCACCAAGAGGAGGTATAATGTACAAGGTCAACGTTGTGGGCGACGATGACGGAAACACAGCTTTGACAGTACTGTGGTGGTCATCTAAAGAGAAATCACAATAACTTGTAAAACAGATTTCACAAATttcaataaaactgtaatatgaCCTTGAATGGTTCAACGCCTGCCTGGAAATTTCTAATATGCTTTGCAAAACCTTAAAAGgttagtttaccccaaaatacaaatgttgtcattaattgctcacccaCATaccgttccaaacctgtaaaaccttCTCAACACCAATTAAGATGCTTATTGGTGACACAACTGACAAGCTGAAGACCCAGAAACATAGCAAAGACAACATTTAAATGGTCtctgtgacatcagtggttcaacagtTATTTCATGACCCCACAAAAattctttgtgcacaaagaaaatgaaaacaatggctttattcaacaatttctctCTTCCATGTGAGTCTTTGATGAACTTTCACAGAAGGACACACAGAAGAGGACAGATTTTTGCAAAAAGTCAGTCTTTTTGGTTTTCTCTCCTTGTGCAAAAAAGAGAGcttttggatttcatcaaaaatatcttaatttttgttcAGAATATGCATGAAGGGCTTACAAGTTCGTAACAGTATGATGGTGAGCATTTAatggcagatttttttaattaactggttcAGGTGACAATGGCCCTCTGCAGGACAATGGCCCTCCAGAAGCAGGATTGAACTCCTCTGGGGTTGGGGCTTGGTTTTTGTCTAATTTGCCAAGAAAGTAGAAGAAGTAGTTGCCAAGTAGAAGACTGGGACAGATGGTATGAATAAAGAGAGGTATACCTGTCGGGGTAGATAAAGGAAGTTTGGTTGTGGTTTGGGATGGCTTGACTGGAGTAGCTTGAGTGGGTCGGTTAGGGATCGCAGGAGCAGGATTTAACGTTGTCTTCAACGGTACTTTAGGATGACTAGTTGTAACTATTTCAGTCTTGACAGGAGGTTCTGTTGTGACTACAGCTGCtcgaaattaaaaaaaaaatatgtaaatcagTTAGATATAGAAATCAgcagaaattaaattaagtttatatCCATGTAATGACAACAAGCAACAAATTTGACTTGCCTTGAACACATTTTCGCATGTCTCTGGCCAACATCATGTTGTCTGGGCAGGCACAAGTGTATTTGGGTGAGAATCTATTGATTTGAGGGGCAGCCAGGCAAAGGAATTCACAGCCACCATTGTTGACCCTGCACCAGTTCATTCCTGGAAAGACATTCAGAATCAGTTCGGAACTACACTGAAGACTATTTCGTCAGTTCAGTTGCTGGGGAGGTTCTGTGAAATGTATGGCTATATAATGGAAGACATACCAGTCGGTTGCTTGAGGTTGTGATACAAGACGATGTCCTCTGGGGACGAGAGGTGTTCGGCCACTTTCGTGATGTCTCTTCCAGTAACACGATTTGCACTTAGAATTGCATTATTGCTTACATCTGTCCAAAACACTTTCtcctaaaaacaacaaattctTGAGTGAGCATTCAGGTAACCTCCTAAACAAGGTCAGATAACCAATTTGAAAGGAGCGTGGAAGTGTTACCTCAAAAACAGTGAGCCCCAGAGGGTGGGCAAGTTTGCCCTGGTCAATGATCAGAGTACGCCGACCATCTCCCTGCACGCCGATGCTGGAGAGAGTGTGTAGCTTGGAGTCGACCCAGTACAAACGCTGGTTCAAAAGGTCTATGCATGGGACAAGACAAGAAAGTGGGTCAGACCAAAGTTGCACTTTGTGCACACTTATGTAAGAGGACATGTTCATACCAAGAGTTATTCCATTGGGCCAGACAATGTCATCCGTAACTAGGGCATAACGGTCCCCTCCATTAAGACCACCTCTCTCGATCTTAGCTGGTGTGCCCCAGTCAGTCCAGAACATGAAGCTACAACAAATAGGAGATTTAACATAGTAAACCACTTGTTTTTGTACTGTATCTCTACATTGTAGAGTATATGGCACTTGACCTACTTCTTAATAGGGTCGACCACAATAGCACGTGGCTTGGCCAGGTTTTCTTTGAAGAGAGTCTTTCGTCTGTTTCCATCCGCCGTCGCCACAGAGATGGCACCTTTAATGCTGTCTGTCCAGTAGATGTTCCCGTGGATCCAGTCGACAGCAATACCCTCAGGTGCATCTAAGTCACTCCCAATCACAACACTATGTTGAGAGGAGTTATCTGCTGTATCCAttg
>TU34167
ccAAGTGAAATCTTCAAATAGTTTATTTCAAGTTAGATTTACACACAGGTCAAGAACGCTCATGAATTAATTCTCAGAAAATGCATCACTAGATCAATTAACCAACCAGAATGTACAGAAAttagtaaaaaattatatatgtgtgtactttgtatattatgtatagttattatgtatattattgtatatttattacatataaatatacccacaaacaatatatatttgtaaaacatgtacatgtatatttatattcatatatgtttaatataaacaattaattaatgtatttatatatacataaatatacacattgcacacacataaattagtacacaaaaacttttatttttgacgCGAATAATCGCAATTCATTGATTGGCAGCACTAacagaaacaattttttttactgtacatagcaaaaaataaaagaaaaaaagacaattatcAGCCAAAGATCTAgattcatgaaaataaatacaactctTCTTTATATACAATACTgcataattaaaacacaaacgctatgtatatgcaaatgcaataataaacatatttacatacactATTTACACATTCACAGTGAGAATGTAAAACAGATGTCACACAAGCTTGACTACAAAAcgtttgtaataaaaatgaaagacattCTCTGACTCCCTGAATAGCATCTGGTATGAATCATCCACATTTTCACTGaagtaaaatcattaaaaaaaaaaaatcactggaaTCATTGGCTCATATAACGAGGAACTTTATAATAGCAAAAAAAGTAACTTCAGTATCAGTACTGCATATGAGAAAGCAACCAGGTGCTGTTGGACAAAGTCTTTTTTCCATGAACTTCCGTTATCAGAAGTaaaaaaagtaaaaaaa
>TU34169
tttttttttttttttttttttttAAATCTTCAAATAGTTTATTTCAAGTTAGATTTACACACAGGTCAAGAACGCTCATGAATTAATTCTCAGAAAATGCATCACTAGATCAATTAACCAACCAGAATGTACAGAAAttagtaaaaaattatatatgtgtgtactttgtatattatgtatagttattatgtatattattgtatatttattacatataaatatacccacaaacaatatatatttgtaaaacatgtacatgtatatttatattcatatatgtttaatataaacaattaattaatgtatttatatatacataaatatacacattgcacacacataaattagtacacaaaaacttttatttttgacgCGAATAATCGCAATTCATTGATTGGCAGCACTAacagaaacaattttttttactgtacatagcaaaaaataaaagaaaaaaagacaattatcAGCCAAAGATCTAgattcatgaaaataaatacaactctTCTTTATATACAATACTgcataattaaaacacaaacgctatgtatatgcaaatgcaataataaacatatttacatacactATTTACACATTCACAGTGAGAATGTAAAACAGATGTCACACAAGCTTGACTACAAAAcgtttgtaataaaaatgaaagacattCTCTGACTCCCTGAATAGCATCTGGTATGAATCATCCACATTTTCACTGaagtaaaatcattaaaaaaaaaaaatcactggaaTCATTGGCTCATATAACGAGGAACTTTATAATAGCAAAAAAAGTAACTTCAGTATCAGTACTGCATATGAGAAAGCAACCAGGTGCTGTTGGACAAAGTCTTTTTTCCATGAACTTCCGTTATCAGAAGTAACTTTGACCattgtggcaaaaaaaaatcttgatgaCTGAAATGGTGTAAACAACGGCATATAACATAAGGAAAACCGACTTTGCACATCTCTTGATAGAGTCTCTTTTGCATACATTGAAAGTACTGCATCTGTAATTAACCTAAGAATTAAATTAGACCAGGTAAATCACGAACGGTTGTttggaatgaaaaaaatagcatgcaGTGTTCGTTTTTTAATCCTAGACAAAAAAGAAGAATCTTTAAAATGTACCAAtacatacaatatttacaataatttatcaGACAATTTATAGTGACaataaaaccttaatttttccttttaagtgctattaaaatatatctatattcatatgtttgcatgattttatataaagtgAAAAACTAAGCAGTCTTGACAGCTGAGGTTGTTGTTGTCTGAGGTTTTTGGTGTTTGGTGTTTTTCTCTTGCATCTGCTttggcttgttttgttttttttttgcatcagatGCATTGTGTGAAAAGGCAGTTTTTATCTCCCCCGTTCCTCAGATGTTGTTTTACTGCAGAACTGACCTCCAAGTAGAAAAGACATCCAATATGGCTCTCGTCTTGAAACATCAGTTTTGGCATGGGCTTTAATGTCAACGTCATATTTCATCATCGATGCTAACAACCTGTCTCTGTGAAAGCAAAATAAGACCATCGGTATTAGACCAGACAGCTGTCTACATAGGCTTATTAGTAAATGGATAAAGTTAACAATGCTTCAGGACATTAGCTAATACGGCTAACATGAGTATTGTCAGTagtcagtaaatgtttttatatcgTACCTGTGGGTAAAAATAGCCATCAGAACTACCGTTTCTGCATAGATGCACCTGGTCCTCTGTGGTCTTTTGATAAACTGGGTTGTCAAAGTGAATGCTGTTGGTATTTTTCTGACGCCACTTTCTCCAGAACAGCACAGCACCACCCACAATCAAACACAGGATCGCTTTGAAAAGATGGGACAAGATCTTTCAATATATCTGTTACATGTTGATTTATGCCTACATATTGCATTAAAACGCTCCCTTTCTTTGTAACGCACAGGTTTTCCGAACGctacacattttttattgcttgtttaAGCATTTGCATCGAAGCACTCACCAAGAGGAGGTATAATGTACAAGGTCAACGTTGTGGGCGACGATGACGGAAACACAGCTTTGACAGTACTGTGGTGGTCATCTAAAGAGAAATCACAATAACTTGTAAAACAGATTTCACAAATttcaataaaactgtaatatgaCCTTGAATGGTTCAACGCCTGCCTGGAAATTTCTAATATGCTTTGCAAAACCTTAAAAGgttagtttaccccaaaatacaaatgttgtcattaattgctcacccaCATaccgttccaaacctgtaaaaccttCTCAACACCAATTAAGATGCTTATTGGTGACACAACTGACAAGCTGAAGACCCAGAAACATAGCAAAGACAACATTTAAATGGTCtctgtgacatcagtggttcaacagtTATTTCATGACCCCACAAAAattctttgtgcacaaagaaaatgaaaacaatggctttattcaacaatttctctCTTCCATGTGAGTCTTTGATGAACTTTCACAGAAGGACACACAGAAGAGGACAGATTTTTGCAAAAAGTCAGTCTTTTTGGTTTTCTCTCCTTGTGCAAAAAAGAGAGcttttggatttcatcaaaaatatcttaatttttgttcAGAATATGCATGAAGGGCTTACAAGTTCGTAACAGTATGATGGTGAGCATTTAatggcagatttttttaattaactggttcAGGTGACAATGGCCCTCTGCAGGACAATGGCCCTCCAGAAGCAGGATTGAACTCCTCTGGGGTTGGGGCTTGGTTTTTGTCTAATTTGCCAAGAAAGTAGAAGAAGTAGTTGCCAAGTAGAAGACTGGGACAGATGGTATGAATAAAGAGAGGTATACCTGTCGGGGTAGATAAAGGAAGTTTGGTTGTGGTTTGGGATGGCTTGACTGGAGTAGCTTGAGTGGGTCGGTTAGGGATCGCAGGAGCAGGATTTAACGTTGTCTTCAACGGTACTTTAGGATGACTAGTTGTAACTATTTCAGTCTTGACAGGAGGTTCTGTTGTGACTACAGCTGCtcgaaattaaaaaaaaaatatgtaaatcagTTAGATATAGAAATCAgcagaaattaaattaagtttatatCCATGTAATGACAACAAGCAACAAATTTGACTTGCCTTGAACACATTTTCGCATGTCTCTGGCCAACATCATGTTGTCTGGGCAGGCACAAGTGTATTTGGGTGAGAATCTATTGATTTGAGGGGCAGCCAGGCAAAGGAATTCACAGCCACCATTGTTGACCCTGCACCAGTTCATTCCTGGAAAGACATTCAGAATCAGTTCGGAACTACACTGAAGACTATTTCGTCAGTTCAGTTGCTGGGGAGGTTCTGTGAAATGTATGGCTATATAATGGAAGACATACCAGTCGGTTGCTTGAGGTTGTGATACAAGACGATGTCCTCTGGGGACGAGAGGTGTTCGGCCACTTTCGTGATGTCTCTTCCAGTAACACGATTTGCACTTAGAATTGCATTATTGCTTACATCTGTCCAAAACACTTTCtcctaaaaacaacaaattctTGAGTGAGCATTCAGGTAACCTCCTAAACAAGGTCAGATAACCAATTTGAAAGGAGCGTGGAAGTGTTACCTCAAAAACAGTGAGCCCCAGAGGGTGGGCAAGTTTGCCCTGGTCAATGATCAGAGTACGCCGACCATCTCCCTGCACGCCGATGCTGGAGAGAGTGTGTAGCTTGGAGTCGACCCAGTACAAACGCTGGTTCAAAAGCCAAGAGTTATTCCATTGGGCCAGACAATGTCATCCGTAACTAGGGCATAACGGTCCCCTCCATTAAGACCACCTCTCTCGATCTTAGCTGGTGTGCCCCAGTCAGTCCAGAACATGAAGCTACAACAAATAGGAGATTTAACATAGTAAACCACTTGTTTTTGTACTGTATCTCTACATTGTAGAGTATATGGCACTTGACCTACTTCTTAATAGGGTCGACCACAATAGCACGTGGCTTGGCCAGGTTTTCTTTGAAGAGAGTCTTTCGTCTGTTTCCATCCGCCGTCGCCACAGAGATGGCACCTTTAATGCTGTCTGTCCAGTAGATGTTCCCGTGGATCCAGTCGACAGCAATACCCTCAGGTGCATCTAAGTCACTCCCAATCACAACACTATGTTGAGAGGAGTTATCTGCTGTATCCAttg

Function

symbol description
ldlra Enables low-density lipoprotein particle receptor activity. Acts upstream of or within cellular response to lipopolysaccharide; cholesterol homeostasis; and receptor-mediated endocytosis involved in cholesterol transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestine and liver. Human ortholog(s) of this gene implicated in Alzheimer's disease; arteriosclerosis; familial hypercholesterolemia; hepatitis C; and migraine without aura. Orthologous to human LDLR (low density lipoprotein receptor).
ldlr Enables several functions, including low-density lipoprotein particle binding activity; low-density lipoprotein particle receptor activity; and very-low-density lipoprotein particle receptor activity. Involved in several processes, including cholesterol homeostasis; cholesterol transport; and long-term memory. Located in several cellular components, including clathrin-coated pit; endosome; and external side of plasma membrane. Part of PCSK9-LDLR complex and receptor complex. Implicated in Alzheimer's disease; arteriosclerosis; familial hypercholesterolemia; hepatitis C; and migraine without aura. Biomarker of systemic lupus erythematosus.

NR:

description
PREDICTED: low-density lipoprotein receptor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34166 True 4277 lncRNA 0.37 2 24615167 24638416
TU34167 False 879 lncRNA 0.27 2 24634157 24673712
TU34169 False 4194 lncRNA 0.37 3 24615167 24638416

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-69e1.8 LOC107758106,LOC107658694,LOC107703890,LOC107728849,LOC107563364,LOC107559220 coding upstream 52578 24558746 ~ 24562589 (+)
hmgxb4a LOC107658693,LOC107758107,LOC107728447,LOC107703878,LOC107563362 coding upstream 58055 24549227 ~ 24557112 (+)
ankrd54 ankrd54,LOC107670919,LOC107559232,LOC107563363,LOC107719341,LOC107728844,LOC107703879 coding upstream 66074 24545411 ~ 24549093 (+)
foxred2 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding upstream 69953 24539323 ~ 24545214 (+)
gcat gcat,LOC107703894,LOC107670921 coding upstream 90567 24521028 ~ 24524600 (+)
LOC122342023 rln3a,LOC107658697,LOC107758104,LOC107559241,LOC107568237,LOC107696003 coding downstream 93917 24767629 ~ 24769271 (+)
il12rb2l LOC107758123 coding downstream 97579 24771291 ~ 24781610 (+)
LOC122342030 LOC107658707,LOC107559242,LOC107728516,LOC107695967 coding downstream 142161 24815873 ~ 24828439 (+)
LOC122342024 chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797 coding downstream 157713 24831425 ~ 24833956 (+)
LOC122341374 NA coding downstream 178669 24852381 ~ 24855237 (+)
G23011 NA non-coding upstream 2416 24612526 ~ 24612751 (+)
G23004 NA non-coding upstream 51272 24563246 ~ 24563895 (+)
G23005 NA non-coding upstream 52040 24562812 ~ 24563127 (+)
G23002 NA non-coding upstream 56906 24557711 ~ 24558261 (+)
G22988 mfsd6l,LOC107719337,LOC107728393,LOC107583315,LOC107703882 non-coding upstream 165297 24268426 ~ 24449870 (+)
G23027 NA non-coding downstream 56647 24730359 ~ 25090434 (+)
G23031 NA non-coding downstream 283599 24957311 ~ 25267157 (+)
G23044 NA non-coding downstream 405980 25079692 ~ 25087970 (+)
G23077 NA non-coding downstream 705516 25379228 ~ 25382913 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding downstream 718806 25392518 ~ 25394254 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 84398 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 165878 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 175704 24434055 ~ 24439463 (+)
G22958 NA other upstream 518008 24095024 ~ 24097159 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 563254 24039902 ~ 24051913 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other downstream 47814 24721526 ~ 24811577 (+)
LOC122342019 LOC107758123 other downstream 309569 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 673072 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 738206 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 850597 25524309 ~ 25569403 (+)

Expression


Co-expression Network