G23026 (LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243)


Basic Information

Item Value
gene id G23026
gene name LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24721526 ~ 24811577 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34183
tcaacaacaacaaccccgATTCATTGACAAAAGCGTATTAAATCAAAGTACCACTGGAAAAGTCACTCGGAATAAGAGTCCAATGGCAACCCCAGCGTATGTGAGGGAGCTGCAGCAGACCTCCCAGCCTCAGGGAGGCGGTGTGACTCCCACATCAGGCCAGGCTGCCACCGTGACGGCGGCTCCCCAACAATTCCTTGCTGAACTTCAGACTACAGGAGCGACGCCCTCAGCGGCCCCGCCCTCCGGCCAGACCACACCCCCTCCCTCGCAAGCACAGAAGAGCCAGGCGATCGCCCAGGCGCCGCCCGCACAAGCCCCGCCCACTCAGACTCAATATGTCACAGCTGAGATTCAGAGCTCACCTACGCAGTCCAGCAGTCAGAACACACCGCAGTACATCGTTGTCACAGTTACAGAGGGTTCTCTTCATTCCAGTGACTCTGTGTCAGATTCTAGTCCTCCTGCTGCCGTAGTCCAGACTGGAGTTCCTACACAGGTGGTGCAGCAGGTGCAGAGCGCCCAACAGAGGTCAGTAGTTCAAGCCACATCTCAGACAACAAAAACAGAGCCGGGCACCCAGCTGAATGTCACCAGCCTACAATCGGTGCACCTGACACAAGAGGT
>TU34184
ataaataataataataataaaccatacAAGGGTGGATTAGAACCGCAGCCTCAGAAATGCTTGACTGAATGACTGatgaattatattgtattattaatacttctatcgtataataatatagtaataactTTGCACTGCCTGCACTGTCTGTAGTTACACCACtgcataacaaatatatacactcatatattatttaaacaaaaacaggatTAACCATTTGACAGCATCCTCACGTTTTGGTTATAAATCTGACGACATTCATTGAcatgcaaaaatacagaaaaccaGAGAGGAGCGAGCACTTGTACACAGCTCTGTATGCCTGTCGACAACTGTTTCTGCGTGCCGTGGCATACAAGACGCAGTATGCAATGAGAcgataaatcaataaaatacctCAATTCTTAACTAAAAGAATTTTGTAACAGAGCGTGCAGCAAAACTGGAAGGCCGCCGCGTATAGGAACATGTCGAACACAAGGCCATCTGTCTCTCACGGTTATTATGAACATGGTTATGACTGAATTTGAATGTTTTCAGCGATGAATACGACAGCACAGTGAAAGCCTCAGCAAGCACCGCCGACAAGCTGCATGTCAGCTGTCGTCATAGTAATGGCATGCTGttcctgataaaaaaaacattcttcatggaataaaactgaaaatgaaataaatttggACTTGGAAGTATCACTGTGCTCTCTGGCAGGTGGAACGGAGCGATGAGATCACCATGCGTTTAAATTTATTTGGGTGGCGGGGATAGGGGGGGAATCTGTGAGTGGCGATGAGTGACGATTAAGCCCCGCCCCTGCTGTCGTCATACCTTTTTGTCTGCCGACGGCACGCTATTGTCCTCGCCTTCGTTTATACTCACGGTGGCTGGAGAGGCACGAGTGGGGTGCGGATAACCGTGACCGTTTCCGCTGCTGCCGGTCCCGCCGCCGGCCAGCATGTAGCCGCCCTGAATCACGTAGCTCCCGCTGCTACCGTTAGCCTCGCCTCCGGAGTCTCCGGAACCGTTCGACGCCGTCCCAGTGGCTGCCACTACGGCTGTGACTCCGCCCCCTGCCGCCGTGGTGGGATTGGCCACGATCTGCCCCGGCCCCGCCACAAACATGGACACCCCGGGGGATCCTGTGGTCACGGAGACGGTGAGGGGGGTCCCGGGGGACGTGGCCTCGGATCCAGAGGCAGGGGTGGTCTCGTAGTACTGTCCAGCAGTGGTCTGGGTGTACAGGGGAGTCTCTGTGTACGGGAAACTGCTGGAACGAGTGGTGCAGCAGGTGCAGAGCGCCCAACAGAGGTCAGTAGTTCAAGCCACATCTCAGACAACAAAAACAGAGCCGGGCACCCAGCTGAATGTCACCAGCCTACAATCGGTGCACCTGACACAAGAGGT
>TU34186
tcaacaacaacaaccccgATTCATTGACAAAAGCGTATTAAATCAAAGTACCACTGGAAAAGTCACTCGGAATAAGAGTCCAATGGCAACCCCAGCGTATGTGAGGGAGCTGCAGCAGACCTCCCAGCCTCAGGGAGGCGGTGTGACTCCCACATCAGGCCAGGCTGCCACCGTGACGGCGGCTCCCCAACAATTCCTTGCTGAACTTCAGACTACAGGAGCGACGCCCTCAGCGGCCCCGCCCTCCGGCCAGACCACACCCCCTCCCTCGCAAGCACAGAAGAGCCAGGCGATCGCCCAGGCGCCGCCCGCACAAGCCCCGCCCACTCAGACTCAATATGTCACAGCTGAGATTCAGAGCTCACCTACGCAGTCCAGCAGTCAGAACACACCGCAGTACATCGTTGTCACAGTTACAGAGGGTTCTCTTCATTCCAGTGACTCTGTGTCAGATTCTAGTCCTCCTGCTGCCGTAGTCCAGACTGGAGTTCCTACACAGGTGGTGCAGCAGGTGCAGAGCGCCCAACAGAGGTCAGTAGTTCAAGCCACATCTCAGACAACAAAAACAGAGCCGGGCACCCAGCTGAATGTCACCAGCCTACAATCGGTGCACCTGACACAAGAGTGGACGGGCAGACAGACAGGGTCTTCTACACCTCTGCTGCTGTGCCAGATGTGCAGTCTTACCTCTA
>TU34188
tcaacaacaacaaccccgATTCATTGACAAAAGCGTATTAAATCAAAGTACCACTGGAAAAGTCACTCGGAATAAGAGAGGGTTCTCTTCATTCCAGTGACTCTGTGTCAGATTCTAGTCCTCCTGCTGCCGTAGTCCAGACTGGAGTTCCTACACAGGTGGTGCAGCAGGTGCAGAGCGCCCAACAGAGGTCAGTAGTTCAAGCCACATCTCAGACAACAAAAACAGAGCCGGGCACCCAGCTGAATGTCACCAGCCTACAATCGGTGCACCTGACACAAGAGGTACAGCAGCAGCTCCAACAGGTGCCAGTCCAGCATGTGTATACCAACCAGGTGCAGTATGTGGAAGGAGGAGATGCAAACTACACCACCAGCACCATTCGTTCCAGCAGTTTCCCGTACACAGAGACTCCCCTGTACACCCAGACCACTGCTGGACAGTACTCACGAGACCACCCCTGCCTCTGGATCCGAGGCCACGTCCCCCGGGTCACGGAGACGGTGAGGGGGGTCCCGGGGGACGTGGCCTCGGATCCAGAGGCAGGGGTGGTCTCGTAGTACTGTCCAGCAGTGGTCTGGGTGTACAGGGGAGTCTCTGTGTACGGGAAACTGCTGGAACGAGTGGTGCAGCAGGTGCAGAGCGCCCAACAGAGGTCAGTAGTTCAAGCCACATCTCAGACAACAAAAACAGAGCCGGGCACCCAGCTGAATGTCACCAGCCTACAATCGGTGCACCTGACACAAGAGGT

Function

NR:

description
PREDICTED: MHC class II regulatory factor RFX1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34183 False 627 TUCP 0.57 4 24721526 24809963
TU34184 True 1404 lncRNA 0.50 3 24754538 24809963
TU34186 False 692 TUCP 0.57 5 24721526 24811577
TU34188 False 751 lncRNA 0.55 8 24721526 24809963

Neighbor

gene id symbol gene type direction distance location
s1pr5a s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470 coding upstream 103285 24614599 ~ 24618241 (+)
si:dkeyp-69e1.8 LOC107758106,LOC107658694,LOC107703890,LOC107728849,LOC107563364,LOC107559220 coding upstream 158937 24558746 ~ 24562589 (+)
hmgxb4a LOC107658693,LOC107758107,LOC107728447,LOC107703878,LOC107563362 coding upstream 164414 24549227 ~ 24557112 (+)
ankrd54 ankrd54,LOC107670919,LOC107559232,LOC107563363,LOC107719341,LOC107728844,LOC107703879 coding upstream 172433 24545411 ~ 24549093 (+)
foxred2 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding upstream 176312 24539323 ~ 24545214 (+)
LOC122342030 LOC107658707,LOC107559242,LOC107728516,LOC107695967 coding downstream 4296 24815873 ~ 24828439 (+)
LOC122342024 chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797 coding downstream 19848 24831425 ~ 24833956 (+)
LOC122341374 NA coding downstream 40804 24852381 ~ 24855237 (+)
LOC122342014 smarca4a,smarca4,LOC107658703,LOC107758124 coding downstream 182678 24994255 ~ 25009566 (+)
grin2ca grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554 coding downstream 294604 25106181 ~ 25162861 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding upstream 47814 24615167 ~ 24673712 (+)
G23013 LOC107658701,LOC107758126 non-coding upstream 70822 24640580 ~ 24650704 (+)
G23011 NA non-coding upstream 108775 24612526 ~ 24612751 (+)
G23004 NA non-coding upstream 157631 24563246 ~ 24563895 (+)
G23005 NA non-coding upstream 158399 24562812 ~ 24563127 (+)
G23031 NA non-coding downstream 145734 24957311 ~ 25267157 (+)
G23044 NA non-coding downstream 268115 25079692 ~ 25087970 (+)
G23077 NA non-coding downstream 567651 25379228 ~ 25382913 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding downstream 580941 25392518 ~ 25394254 (+)
G23095 NA non-coding downstream 607093 25418670 ~ 25419775 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 190757 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 272237 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 282063 24434055 ~ 24439463 (+)
G22958 NA other upstream 624367 24095024 ~ 24097159 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 669613 24039902 ~ 24051913 (+)
LOC122342019 LOC107758123 other downstream 171704 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 535207 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 600341 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 712732 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 762180 25573757 ~ 25577043 (+)

Expression


Co-expression Network