G23061 (rps2,LOC107758112,LOC107690003,LOC107555664)


Basic Information

Item Value
gene id G23061
gene name rps2,LOC107758112,LOC107690003,LOC107555664
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25411918 ~ 25447270 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34258
GTTTACagtctattttgtttttttttTTGGTTCTTTCTGGACTTTTATTTCAATCCATTGTACAAAACTTAGGAGGCTGTCTGAAGAGCTCCCTGAGTCCTCTGGACATTGACCCTGGTGTGAGTCTTGGCCAGATGATCAGTGAATTCCTGGAAGGAGACTTGGTGAACACCGTTTCCTTCCAGAGATCAGGGGTCAGGTAGCTGTACGTCTTTGAGATCGCGTCGAAGGTGGCCTTGGCTGCAATGAGAGAATAGACATtaccatcaaaataaatcaagaacGTTCCGCTTCATCCTGAAACGCCGGTATTCAGACCAAAGCCCTTACCGAAGTTGCCCAGAGTGGCGGTGCAGCCCCTGGCTGAGGTGTAGCAGTCGTCGATACCAGCCATCATCAGCAGCTTCTTGGGCACAGGAGCGGACACAATACCAGTCCCACGGGGAGCGGGGATGAGCCGCACCAGGACTGAGCCGCAGCGACCGGTCACCTGCACGGCACCGTGTGGGGCTTTCCGATCTTGTTACCCCAGTATCCTCTCCTGACGGGAATGATGGACAGTTTGGCCAGGATAATGGCACCACGGATAGCGGTCGCTACCTCTTTGGAGCACTTCACTCCCAGACCGACATGGCCGTTGTAGTCACCGATAGCAACAAAGGCCTAAACCTGGTGCGCTGACCAGCCCTGGTCTGCTTCTGGACAGGCATGATCTTCAGGACTTCATCTTTCAGGGCTGAACCCAGGAAGAAGTCAATGATCTCAGACTCTTGATGGGCAGAGAATACAGGTAGATCTCCTCCAGAGTCTTGATCTTCATGTCCTTCACCAGACGACCAAGTTTGGTCACGGGCACCCACTCTTATCCTCAGATTTTCCTCCGCGGGCCCCGCGGCCTCTTCCACGGCCCCTGCCGCGACCACGACCGCGACCCCGGCCGCCAGTGCCGAAACCCCCGCGAAAACCTCCTCTACCACCGGCGTCGTCCGCCATTTGCTGTGAAACACGACACAACCGTCAATTAGCAAACCAGTGACTCCAACGACAGATGATAAAGACGGACTTAAAACTCCCGCTTACGAGCGACTAACTATACAAGACACATAATGGACAAATCATGTATATCTGGATAactattgtataaatattacgAATTGTATAATACAGTTAAGTATGTGGAATACGTTACCGGTACCCGCTATTTTTGAGACCACATCCATAAAAGTGCCCTAAAATAACCTATCCGCCCAAATCATAAGATTAATTTTGCGCCCACATTGTTACTAAGACGCACGCAGATGTGTCCTACagaattgtaacatttttatttcgcGATTGCGGAGATATTAAGAGATATTGTTCGCTATGACAGCGCC
>TU34262
CAGACTGAAGTTGGTTCTTTCTGGACTTTTATTTCAATCCATTGTACAAAACTTAGGAGGCTGTCTGAAGAGCTCCCTGAGTCCTCTGGACATTGACCCTGGTGTGAGTCTTGGCCAGATGATCAGTGAATTCCTGGAAATAGGGACAAGCGCACTTTAGTTTCAGAAAGGCCACCATGATGCAGCAGTGAGGAGGACGAACGTGAAAGAGCATGTTACCTGGTAAGGAGACTTGGTGAACACCGTTTCCTTCCAGAGATCAGGGGTCAGGTAGCTGTACGTCTTTGAGATCGCGTCGAAGGTGGCCTTGGGAAGTTGCCCAGAGTGGCGGTGCAGCCCCTGGCTGAGGTGTAGCAGTCGTCGATACCAGCCATCATCAGCAGCTTCTTGGGCACAGGAGCGGACACAATACCAGTCCCACGGGGAGCGGGGATGAGCCGCACCAGGACTGAGCCGCAGCGACCGGTCACTTGCACGGCACCGTGTGGGGCTTTCCGATCTTGTTACCCCAGTATCCTCTCCTGACGGGAATGATGGACAGTTTGGCCAGGATAATGGCACCACGGATAGCGGTCGCTACCTCTTTGGAGCACTTCACTCCCAGACCGACATGGCCGTTGTAGTCACCGATAGCAACAAAGGCCTAGAAGATTGAGAGACAACACTAGTTTAACAAAAAGAAACCGGGAATTTCAATAGTTAAACGCTTAGAAAGTCAGTCACCTTAAACCTGGTGCGCTGACCAGCCCTGGTCTGCTTCTGGACAGGCATGATCTTCAGGACTTCATCTTTCAGGGCTGAACCCAGGAAGAAGTCAATGATCTCAGACTCCTATGGGCAGAGAATACAGGTAGATCTCCTCCAGAGTCTTGATCTTCATGTCCTTCACCAGACGACCAAGTTTGGTCACGGGCACCCACTATATGAAACAGAAACGGTACATAAACAGGCTAAAACTACGCATTTTTTAGATTGACACTGACAGCTACCGGCATATCACAGCGATTAGTGAACAAAGATAAGCCATAATAAAGAGGCCGACTGTCCTCAATGTGAGCATCTCTTTAACAAGGCGTCTTAACGCAGGTTTACAGCAGCGGGTGAAGGTTGGCGCTTTACCTCCTTATCCTCAGATTTTCCTCCGCGGGCCCCGCGGCCTCTTCCACGGCCCCTGCCGCGACCACGACCGCGACCCCGGCCGCCAGTGCCGAAACCCCCGCGAAAACCTCCTCTACCACCGGCGTCGTCCGCCATTTGCTGTGAAACACGACACAACCGTCAATTAGCAAACCAGTGACTCCAACGACAGATGATAAAGACGGACTTAAAACTCCCGCTTACGAGCGACTAACTATACAAGACACATAATGGACAAATCATGTATATCTGGATAactattgtataaatattacgAATTGTATAATACAGTTAAGTATGTGGAATACGTTACCGGTACCCGCTATTTTTGAGACCACATCCATAAAAGTGCCCTAAAATAACCTATCCGCCCAAATCATAAGATTAATTTTGCGCCCACATTGTTACTAAGACGCACGCAGATGTGTCCTACagaattgtaacatttttatttcgcGATTGCGGAGATATTAAGAGATATTGTTCGCTATGACAGCGCC
>TU34263
CAGACTGAAGTTGGTTCTTTCTGGACTTTTATTTCAATCCATTGTACAAAACTTAGGAGGCTGTCTGAAGAGCTCCCTGAGTCCTCTGGACATTGACCCTGGTGTGAGTCTTGGCCAGATGATCAGTGAATTCCTGGAAATAGGGACAAGCGCACTTTAGTTTCAGAAAGGCCACCATGATGCAGCAGTGAGGAGGACGAACGTGAAAGAGCATGTTACCTGGTAAGGAGACTTGGTGAACACCGTTTCCTTCCAGAGATCAGGGGTCAGGTAGCTGTACGTCTTTGAGATCGCGTCGAAGGTGGCCTTGGCTGCAATGAGAGAATAGACATtaccatcaaaataaatcaagaacGTTCCGCTTCATCCTGAAACGCCGGTATTCAGACCAAAGCCCTTACCGAAGTTGCCCAGAGTGGCGGTGCAGCCCCTGGCTGAGGTGTAGCAGTCGTCGATACCAGCCATCATCAGCAGCTTCTTGGGCACAGGAGCGGACACAATACCAGTCCCACGGGGAGCGGGGATGAGCCGCACCAGGACTGAGCCGCAGCGACCGGTCACCTGCACGGCACCGTGTGGGGCTTTCCGATCTTGTTACCCCAGTATCCTCTCCTGACGGGAATGATGGACAGTTTGGCCAGGATAATGGCACCACGGATAGCGGTCGCTACCTCTTTGGAGCACTTCACTCCCAGACCGACATGGCCGTTGTAGTCACCGATAGCAACAAAGGCCTAAACCTGGTGCGCTGACCAGCCCTGGTCTGCTTCTGGACAGGCATGATCTTCAGGACTTCATCTTTCAGGGCTGAACCCAGGAAGAAGTCAATGATCTCAGACTCCTACAGTGGGCAGAGAATACAGGTAGATCTCCTCCAGAGTCTTGATCTTCATGTCCTTCACCAGACGACCAAGTTTGGTCACGGGCACCCACCTCCTTATCCTCAGATTTTCCTCCGCGGGCCCCGCGGCCTCTTCCACGGCCCCTGCCGCGACCACGACCGCGACCCCGGCCGCCAGTGCCGAAACCCCCGCGAAAACCTCCTCTACCACCGGCGTCGTCCGCCATTTGCTGTGAAACACGACACAACCGTCAATTAGCAAACCAGTGACTCCAACGACAGATGATAAAGACGGACTTAAAACTCCCGCTTACGAGCGACTAACTATACAAGACACATAATGGACAAATCATGTATATCTGGATAactattgtataaatattacgAATTGTATAATACAGTTAAGTATGTGGAATACGTTACCGGTACCCGCTATTTTTGAGACCACATCCATAAAAGTGCCCTAAAATAACCTATCCGCCCAAATCATAAGATTAATTTTGCGCCCACATTGTTACTAAGACGCACGCAGATGTGTCCTACagaattgtaacatttttatttcgcGATTGCGGAGATATTAAGAGATATTGTTCGCTATGACAGCGCC
>TU34264
GTTTACagtctattttgtttttttttTTGGTTCTTTCTGGACTTTTATTTCAATCCATTGTACAAAACTTAGGAGGCTGTCTGAAGAGCTCCCTGAGTCCTCTGGACATTGACCCTGGTGTGAGTCTTGGCCAGATGATCAGTGAATTCCTGGAAGGAGACTTGGTGAACACCGTTTCCTTCCAGAGATCAGGGGTCAGGTAGCTGTACGTCTTTGAGATCGCGTCGAAGGTGGCCTTGGCTGCAATGAGAGAATAGACATtaccatcaaaataaatcaagaacGTTCCGCTTCATCCTGAAACGCCGGTATTCAGACCAAAGCCCTTACCGAAGTTGCCCAGAGTGGCGGTGCAGCCCCTGGCTGAGGTGTAGCAGTCGTCGATACCAGCCATCATCAGCAGCTTCTTGGGCACAGGAGCGGACACAATACCAGTCCCACGGGGAGCGGGGATGAGCCGCACCAGGACTGAGCCGCAGCGACCGGTCACCTGAGCAGACACGCGCTCCGTCACTAAACGCATCCAAACAGAGCCGAACCGAGCACAAAACCACCTCTGAACTCACCTTGCACGGCACCGTGTGGGGCTTTCCGATCTTGTTACCCCAGTATCCTCTCCTGACGGGAATGATGGACAGTTTGGCCAGGATAATGGCACCACGGATAGCGGTCGCTACCTCTTTGGAGCACTTCACTCCCAGACCGACATGGCCGTTGTAGTCACCGATAGCAACAAAGGCCTAGAAGATTGAGAGACAACACTAGTTTAACAAAAAGAAACCGGGAATTTCAATAGTTAAACGCTTAGAAAGTCAGTCACCTTAAACCTGGTGCGCTGACCAGCCCTGGTCTGCTTCTGGACAGGCATGATCTTCAGGACTTCATCTTTCAGGGCTGAACCCAGGAAGAAGTCAATGATCTCAGACTCCTTTGATGGGCAGAGAATACAGGTAGATCTCCTCCAGAGTCTTGATCTTCATGTCCTTCACCAGACGACCAAGTTTGGTCACGGGCACCCACTATATGAAACAGAAACGGTACATAAACAGGCTAAAACTACGCATTTTTTAGATTGACACTGACAGCTACCGGCATATCACAGCGATTAGTGAACAAAGATAAGCCATAATAAAGAGGCCGACTGTCCTCAATGTGAGCATCTCTTTAACAAGGCGTCTTAACGCAGGTTTACAGCAGCGGGTGAAGGTTGGCGCTTTACCTCCTTATCCTCAGATTTTCCTCCGCGGGCCCCGCGGCCTCTTCCACGGCCCCTGCCGCGACCACGACCGCGACCCCGGCCGCCAGTGCCGAAACCCCCGCGAAAACCTCCTCTACCACCGGCGTCGTCCGCCATTTGCTGTGAAACACGACACAACCGTCAATTAGCAAACCAGTGACTCCAACGACAGATGATAAAGACGGACTTAAAACTCCCGCTTACGAGCGACTAACTATACAAGACACATAATGGACAAATCATGTATATCTGGATAactattgtataaatattacgAATTGTATAATACAGTTAAGTATGTGGAATACGTTACCGGTACCCGCTATTTTTGAGACCACATCCATAAAAGTGCCCTAAAATAACCTATCCGCCCAAATCATAAGATTAATTTTGCGCCCACATTGTTACTAAGACGCACGCAGATGTGTCCTACagaattgtaacatttttatttcgcGATTGCGGAGATATTAAGAGATATTGTTCGCTATGACAGCGCC
>TU34266
GTTTACagtctattttgtttttttttTTGGTTCTTTCTGGACTTTTATTTCAATCCATTGTACAAAACTTAGGAGGCTGTCTGAAGAGCTCCCTGAGTCCTCTGGACATTGACCCTGGTGTGAGTCTTGGCCAGATGATCAGTGAATTCCTGGAAGGAGACTTGGTGAACACCGTTTCCTTCCAGAGATCAGGGGTCAGGTAGCTGTACGTCTTTGAGATCGCGTCGAAGGTGGCCTTGGCTGCAATGAGAGAATAGACATtaccatcaaaataaatcaagaacGTTCCGCTTCATCCTGAAACGCCGGTATTCAGACCAAAGCCCTTACCGAAGTTGCCCAGAGTGGCGGTGCAGCCCCTGGCTGAGGTGTAGCAGTCGTCGATACCAGCCATCATCAGCAGCTTCTTGGGCACAGGAGCGGACACAATACCAGTCCCACGGGGAGCGGGGATGAGCCGCACCAGGACTGAGCCGCAGCGACCGGTCACCTGAGCAGACACGCGCTCCGTCACTAAACGCATCCAAACAGAGCCGAACCGAGCACAAAACCACCTCTGAACTCACCTTGCACGGCACCGTGTGGGGCTTTCCGATCTTGTTACCCCAGTATCCTCTCCTGACGGGAATGATGGACAGTTTGGCCAGGATAATGGCACCACGGATAGCGGTCGCTACCTCTTTGGAGCACTTCACTCCCAGACCGACATGGCCGTTGTAGTCACCGATAGCAACAAAGGCCTTTAAACCTGGTGCGCTGACCAGCCCTGGTCTGCTTCTGGACAGGCATGATCTTCAGGACTTCATCTTTCAGGGCTGAACCCAGGAAGAAGTCAATGATCTCAGACTCCTATGGGCAGAGAATACAGGTAGATCTCCTCCAGAGTCTTGATCTTCATGTCCTTCACCAGACGACCAAGTTTGGTCACGGGCACCCACCTCCTTATCCTCAGATTTTCCTCCGCGGGCCCCGCGGCCTCTTCCACGGCCCCTGCCGCGACCACGACCGCGACCCCGGCCGCCAGTGCCGAAACCCCCGCGAAAACCTCCTCTACCACCGGCGTCGTCCGCCATTTGCTGTGAAACACGACACAACCGTCAATTAGCAAACCAGTGACTCCAACGACAGATGATAAAGACGGACTTAAAACTCCCGCTTACGAGCGACTAACTATACAAGACACATAATGGACAAATCATGTATATCTGGATAactattgtataaatattacgAATTGTATAATACAGTTAAGTATGTGGAATACGTTACCGGTACCCGCTATTTTTGAGACCACATCCATAAAAGTGCCCTAAAATAACCTATCCGCCCAAATCATAAGATTAATTTTGCGCCCACATTGTTACTAAGACGCACGCAGATGTGTCCTACagaattgtaacatttttatttcgcGATTGCGGAGATATTAAGAGATATTGTTCGCTATGACAGCGCC

Function

symbol description
rps2 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in epidermis; mesenchyme; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human RPS2 (ribosomal protein S2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34258 False 1376 lncRNA 0.50 7 25411918 25447270
TU34262 False 1637 lncRNA 0.49 4 25445299 25447270
TU34263 False 1451 TUCP 0.51 5 25445299 25447270
TU34264 True 1737 lncRNA 0.49 4 25411918 25447270
TU34266 False 1456 TUCP 0.50 6 25411918 25447270

Neighbor

gene id symbol gene type direction distance location
cbx8a LOC107758117,LOC107578989,LOC107728583,LOC107689994,LOC107559248,LOC107670683 coding upstream 72027 25336185 ~ 25339891 (+)
cbx4 cbx4,LOC107758118,LOC107559247,LOC107690020,LOC107670662,LOC107728779,LOC107562304 coding upstream 78053 25327720 ~ 25333865 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 coding upstream 103484 25287754 ~ 25308434 (+)
gaa gaa,LOC107559225 coding upstream 124993 25277792 ~ 25286925 (+)
grin2ca grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554 coding upstream 249057 25106181 ~ 25162861 (+)
kdelr2a kdelr2a,kdelr2,LOC107670681,LOC107728665,LOC107555655,LOC108432184,LOC102784720,LOC102215457 coding downstream 3125 25450395 ~ 25454405 (+)
spag9a spag9a,LOC107690005,LOC107583630,LOC107670658,LOC107728806 coding downstream 7890 25455160 ~ 25484444 (+)
LOC122336725 LOC107555667,LOC107755177,LOC107583709,LOC107690013,LOC107751312,LOC107670672 coding downstream 139253 25586523 ~ 25604509 (+)
LOC122336618 LOC107690031 coding downstream 162210 25609480 ~ 25611691 (+)
LOC122336676 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding downstream 181629 25628899 ~ 25630633 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding upstream 17664 25392518 ~ 25394254 (+)
G23077 NA non-coding upstream 29005 25379228 ~ 25382913 (+)
G23031 NA non-coding upstream 144761 24957311 ~ 25267157 (+)
G23027 NA non-coding upstream 321484 24730359 ~ 25090434 (+)
G23044 NA non-coding upstream 323948 25079692 ~ 25087970 (+)
G23106 NA non-coding downstream 66944 25514214 ~ 25519748 (+)
G23125 NA non-coding downstream 183869 25631139 ~ 25767050 (+)
G23127 NA non-coding downstream 187354 25634624 ~ 25727704 (+)
G23126 NA non-coding downstream 199916 25647186 ~ 25725255 (+)
G23135 NA non-coding downstream 247216 25694486 ~ 25694868 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other upstream 37420 25346784 ~ 25374498 (+)
LOC122342019 LOC107758123 other upstream 418700 24983281 ~ 24993218 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 600341 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 881149 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 962629 24446878 ~ 24449289 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 77039 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 126487 25573757 ~ 25577043 (+)
LOC122336634 NA other downstream 165889 25613159 ~ 25615905 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other downstream 213778 25661048 ~ 25662317 (+)
LOC122341783 arl16,LOC107583744 other downstream 385235 25832505 ~ 25834198 (+)

Expression


Co-expression Network