G23078 (grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579)


Basic Information

Item Value
gene id G23078
gene name grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25392518 ~ 25394254 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34296
ATGGTACCCTCAGAATTTTCCACTTGTTCCCATCGTAGCCGCTTTACACTCATATGACTGGAGTCAGATTGTTGTGGTGAGGCCTTTGGGAGTGGAGGAGGCATGCAAGGTGGTGGTaaaggtggaggaggaggtggcTCCACAGTAGGCCCATCAGTGGGGTGGTGAGGCTGAGGTTGGGGTGTACTTGGTGGTTGCATTTGGGACTGGGCCTGGTGGCTGTGATGGTGATGGTGGTGACGATGTTCGTGGTACATGGGTTGTGGGCTCTGTCTGGCCTGTGTAATGGGGGGAATCTGAGGGGTTGAGCggtgctgttgctgctgctgaaTCTGCTGCTGTATCTGCTGGGCTTGTTGCTGCTGAATCTGCTGCTGAATCTGCTGAGCTTGCTGCTGCTGAATCTGTTGCTGAATCTGCTGAGCTTGCTGCTGCTGaagttgctgctgctgctgaagctGCTGTTGaagttgttgctgctgctgaagttgctgttgctgctgcatctgctgaagctgctgttgctgctgttgtGAAGGATGAGGCTGGAAGGTTGACAGAATCTGTTGGGTCTGGTGAGGTTGGTGGGGCTGGTGGATCTGGTGGTACTGAGGAGCTGTCTGGATTGGCTGAACCTGGTGTATGTGTTCAATCTGGTGAATGTGGCGGGTGGGCAAAGGAGCTTGATGCATCTGGTGGTGGTACTGTTGCTGAGCCTGGGGAGATGGTTGAACAGCTTGAGAAACTGCTTGAGCCACATGTGCACGGTGCATTTGTCTATCCACCCTCTCCAGTCTTTCAATTCGCTCCATGCGGTCTAAGCGTTCCAAACGCTGGATCTGCTCCAATCTGTCAAGTCTATCCATGGAGCTTGAGAGGTGAGCCTGATGACTCTGATGCATCTGATAAGCATGGTGTACTTGTTGATCTGGATACAAGGGCTGGGGCTGCATGTCATAGATATGCCTATCTGAGCGTTCCTTTCTTTCAATCCTATCAAGCCTATCCATGGAGCTAGATAGTTGAGTCTGAATAGTCTGGTGTGAGTGGTGGCTTTGGTGCACTTTAATAGACTGAGATTGGTGACTTGGTTTATTTTGATGGATTGGATGCATCTGGTGGTCCTGTTGCACCTGGTGGTGTTGGTGAACCTGATGAGCTGGATGAGACTGGTGATGCATCTCGTAGATTGCATGACTGGGGATGGGTGATTGGTCTATTTCTGGAGAGGGCATAGGGGGCAGAGACTGATGCATTTGTTGCAGGGATTGCTGAGGGTGGCTGGCTGTTGGCTGAACTGGAAGCGAGTGGTGCTCCTGAAGGACCTGGTGCTGTGTCATCAGCTCTTCACGTGTGGGCAACACTTTGTGAATGGATTGTCGTTTTGGAGGTGGGTTAGCTCTTGGCGGAGGTGGCGGAGGAGGTCCAGGGTGTCGACGGAAGGTCAGCTGTCGGGGTGCATGGTCAGGAGTGAATCCAGCAGGTGGAGGGGGGTCATTAAACTGGACGGGGGGAGGGGGAGGAGTAGGTAAGAGAGCTGGCATCCTCACTGCTACTATGTACTTCGCTTGGGCTGCTTAGCTCGGGAGGCATGTACGGaccctcttcctcctcctcctcctcctcctcttcttcttcctcttcctcctcctcctctacctcctcttcctcattctGGAAAGTCATCTGGACAATG

Function

symbol description
grid2ipa Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Orthologous to human GRID2IP (Grid2 interacting protein).

NR:

description
PREDICTED: delphilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34296 True 1696 lncRNA 0.53 2 25392518 25394254

Neighbor

gene id symbol gene type direction distance location
cbx8a LOC107758117,LOC107578989,LOC107728583,LOC107689994,LOC107559248,LOC107670683 coding upstream 52627 25336185 ~ 25339891 (+)
cbx4 cbx4,LOC107758118,LOC107559247,LOC107690020,LOC107670662,LOC107728779,LOC107562304 coding upstream 58653 25327720 ~ 25333865 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 coding upstream 84084 25287754 ~ 25308434 (+)
gaa gaa,LOC107559225 coding upstream 105593 25277792 ~ 25286925 (+)
grin2ca grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554 coding upstream 229657 25106181 ~ 25162861 (+)
narfl narfl,LOC107583598 coding downstream 29689 25423943 ~ 25430065 (+)
fahd1 fahd1,LOC107586194,LOC107555652,LOC107586183,LOC107690023 coding downstream 41909 25436163 ~ 25437150 (+)
ndufb10 LOC107555654,LOC107583619,LOC107758101 coding downstream 48356 25442610 ~ 25444546 (+)
kdelr2a kdelr2a,kdelr2,LOC107670681,LOC107728665,LOC107555655,LOC108432184,LOC102784720,LOC102215457 coding downstream 56141 25450395 ~ 25454405 (+)
spag9a spag9a,LOC107690005,LOC107583630,LOC107670658,LOC107728806 coding downstream 60906 25455160 ~ 25484444 (+)
G23077 NA non-coding upstream 9605 25379228 ~ 25382913 (+)
G23031 NA non-coding upstream 125361 24957311 ~ 25267157 (+)
G23027 NA non-coding upstream 302084 24730359 ~ 25090434 (+)
G23044 NA non-coding upstream 304548 25079692 ~ 25087970 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding upstream 718806 24615167 ~ 24673712 (+)
G23095 NA non-coding downstream 24416 25418670 ~ 25419775 (+)
G23096 NA non-coding downstream 26018 25420272 ~ 25421130 (+)
G23069 NA non-coding downstream 36220 25430474 ~ 25434548 (+)
G23106 NA non-coding downstream 119960 25514214 ~ 25519748 (+)
G23125 NA non-coding downstream 236885 25631139 ~ 25767050 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other upstream 18020 25346784 ~ 25374498 (+)
LOC122342019 LOC107758123 other upstream 399300 24983281 ~ 24993218 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 580941 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 861749 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 943229 24446878 ~ 24449289 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 17664 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 130055 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 179503 25573757 ~ 25577043 (+)
LOC122336634 NA other downstream 218905 25613159 ~ 25615905 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other downstream 266794 25661048 ~ 25662317 (+)

Expression


Co-expression Network