tob1a (tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673)


Basic Information

Item Value
gene id tob1a
gene name tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25524309 ~ 25569403 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34339
TAAAACACCCAGATAGAGGGGGTGGAGAGGAGCTTATTGGGAAGGTGAAACAGCAAATACCTTACAGATAACTGGGAGCAagataagaagaagaagaagaggaaaaacaaaaaaactcaacaaaaataaaacacttcaagTCTACCAACTGGAATACCTTTATGTTAATGTGAAGAAAGTATTTATATCTGAAGTTTTTTATGTGCACTAGTCAAGGCTACTGCAACTACTGAAAATCGTCATTTTGTAAACTCAAGAACCGGATCAGCCGTTTGTGGTCTGAGACGTTCCCTCTGCAACCAGCACTTTGTTTCGAACCAGGGGGGGGGGACAAAAATAAGACACTCAACTTGCCCCGCCGTGGCTTAAACTCTTGTCTGTTCCGGATGATTTTCGACAGCGAAGTTGAAAGGAGTCTATTTACAGTCTTCAGACCGAAATCGGATCAAAACGGCACGATATAGTAAATAGGGACGCGTTCAAATAATCTTTACCGACTACCGCAATCCACTCGGATCCGCTGCACCTCCCATGTTGGG
>XM_043234957.1
AGTAGGGGACGAAATTGTAAAACACCCAGATAGAGGGGGTGGAGAGGAGCTTATTGGGAAGGTGAAACAGCAAATACCTTACAGATAACTGGGAGCAagataagaagaagaagaagaggaaaaacaaaaaaactcaacaaaaataaaacacttcaagTCTACCAACTGGAATACCTTTATGTTAATGTGAAGAAAGTATTTATATCTGAAGTTTTTTATGTGCACTAGTCAAGGCTACTGCAACTACTGAAAATCGTCATTTTGTAAACTCAAGAACCGGATCAGCCGTTTGTGGTCTGAGACGTTCCCTCTGCAACCAGCACTTTGTTTCGAACCGTTCCCCCCAACCACCCCAAGTTTCTGTTTATTTGCCTGGCTCCAGCCGAGCCTTGCCCTCTGGTGGCTTACAACACAATACGCGAATTCAAACAGCCAACGGTGGTGATACTCCAGGGCAGCGCAGCAGCTATGCAGCTTGAAATCCAAGTAGCACTCAACTTCATCATTTCGTACTTGTACAATAAGCTGCCCAGGCGACGTGTCAACATTTTCGGCGAGGAGTTGGAGCGACAGCTGAAACAGAAATACGAGGGACACTGGTACCCGGACAAGCCATACAAAGGGTCTGGATTCAGGTGTATACATGTCGGGGAGAAAGTGGACCCAGTTGTAGAGCAAGCAGCCAAAGAAAGTGGGTTGGACATTGAGGATGTCCGCAACAACCTGCCTCAGGACCTCAGTGTCTGGATTGATCCTTTCGAGGTGTCTTATCAGATTGGGGAGAAGGGACCCGTCAAGGTGCTCTATGTGGACGACAGTAATGAGAACGGCCTGGAGCTGGACAAGGAGATCAAGAACAGCTTTAACCCAGAGGCCCAGGTCTTCATGCCCATTAGCGAACCCCTAGGCATGTCCCCCACCTCCAGTTCCCCGTCCCCTCCGTTTGGCCAGTCGGCGGCGGTCAGCCCCACCTTCATGCGCCGTTCCACGCAACCTTTAACCTTTACCACTGCCAGCTTCGCCGCCACCAAATTTGGCTCCACGAAAATGAAAAGCAACGGGAGGAACGCCAACAAGGTGACCCGAAACTCCCCCACCAACCTGGGCCTGAATGTAAACAACCTCCTGAAGCAGAAAGCCATGTCCACATCCATGCATTCTCTCTATGGCGTCGGCTTGGGCAGTCAGCCGCAGAAGCCCTCCGCCCTGTCTCCCAACGCCAAGGAGTTTGTGTTCCCCAATCTCCAGGGGCAGGGCAGCCCAAGTGCAATGTTCCCCGGGGAAACGCCCCTCAATCTCAGCCCTCTCCCGTACAATAATGCCTTTGACGTGTTTGCAGCCTACGGGGGCCTTAACGAGAAGTCCCTCATGGACAGTCTGAGTTTCAGCTTGAGCAACATGCAGTATTCTAACCAGCAATTCCAGCCAGTGATGGCCAACTAGAAAGAGAGAATACTACTAACGACCAGAGATATGTGACGGGACGGAGAAAAGTTCGCGTTTGGAAAatcccaaaaaaatgaaaaaacaaaaaaagcaaaaagaaaatcgCAAAGCAACACTTCAACTGTAAAGTCCCGGCGAATAAGTCAAACGATGAGCCCGAGGGTTGTTCCCTTGAgtattttttgtcattctttttacgatTAAGCTTGGTGTACAATCAAGCTTAGTTCTCTAAActcatatagtttttttttttttttttttttttaagttgttttcttttgccAACCAagcacaaaattatttttactgaCTGTTTTAAGATATATCTTTATGATGAAGACGAAAACTACAAATCAAGGCCTCTAATAGTATTCAAGGTATAGCTACACAGCCAATTTTTCCGAGGATTGGCCTGAATGCTGAATGAGGGATTTCTTGGTCTTTTTTctaactgtataattaatttaGTAGAAAGTTTGTAAAATATCAGAGTATATATTGTTTCTACGACATATTGCATTTATATCTTTTTACTACTCCAGTGATCTGTGATGGCTGCAGCagcttttgttatatttttttttattgaaaattgtaaattgaaatccatctttaaaaacatcaacTATTCTAAAGATTGTGTACAGAATATTCCATTGTGTTgggatttaaaaatatttgctttttgggggaggaaaaaaaaaaaaaaaaagaggaaaaacaaaacaaaaacaagagttGTATTTTCTGTTAAGAGTTCAAAGATTTTTGCTATACTATGGACAAAATGTAATCGTATATTAATTTTGTACCAACATTGTGCAATacttgacaaaaacaaatagtATAACAAAGTATTTGGAGTCAGTGTCTTACATGTAAAGAGGGACTGATAGTTTATTAagtttgtattaaaatgcttGAAATTATA

Function

symbol description
tob1a Predicted to enable transcription corepressor activity. Acts upstream of or within BMP signaling pathway and dorsal/ventral pattern formation. Located in cytoplasm and nucleus. Is expressed in several structures, including hatching gland; mesoderm; musculature system; nervous system; and solid lens vesicle. Orthologous to human TOB1 (transducer of ERBB2, 1).

NR:

description
PREDICTED: protein Tob1-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K14443 TOB; protein Tob/BTG

RNA

RNA id representative length rna type GC content exon number start site end site
TU34339 False 539 lncRNA 0.43 3 25524326 25569403
XM_043234957.1 True 2380 mRNA 0.43 2 25524309 25528038

Neighbor

gene id symbol gene type direction distance location
spag9a spag9a,LOC107690005,LOC107583630,LOC107670658,LOC107728806 coding upstream 39865 25455160 ~ 25484444 (+)
kdelr2a kdelr2a,kdelr2,LOC107670681,LOC107728665,LOC107555655,LOC108432184,LOC102784720,LOC102215457 coding upstream 69904 25450395 ~ 25454405 (+)
ndufb10 LOC107555654,LOC107583619,LOC107758101 coding upstream 79763 25442610 ~ 25444546 (+)
fahd1 fahd1,LOC107586194,LOC107555652,LOC107586183,LOC107690023 coding upstream 87159 25436163 ~ 25437150 (+)
narfl narfl,LOC107583598 coding upstream 94244 25423943 ~ 25430065 (+)
LOC122336725 LOC107555667,LOC107755177,LOC107583709,LOC107690013,LOC107751312,LOC107670672 coding downstream 17120 25586523 ~ 25604509 (+)
LOC122336618 LOC107690031 coding downstream 40077 25609480 ~ 25611691 (+)
LOC122336676 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding downstream 59496 25628899 ~ 25630633 (+)
LOC122336602 LOC107690031 coding downstream 127468 25696871 ~ 25699105 (+)
LOC122341888 NA coding downstream 135252 25704655 ~ 25706218 (+)
G23106 NA non-coding upstream 4561 25514214 ~ 25519748 (+)
G23069 NA non-coding upstream 89761 25430474 ~ 25434548 (+)
G23096 NA non-coding upstream 103179 25420272 ~ 25421130 (+)
G23095 NA non-coding upstream 104534 25418670 ~ 25419775 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding upstream 130055 25392518 ~ 25394254 (+)
G23125 NA non-coding downstream 61736 25631139 ~ 25767050 (+)
G23127 NA non-coding downstream 65221 25634624 ~ 25727704 (+)
G23126 NA non-coding downstream 77783 25647186 ~ 25725255 (+)
G23135 NA non-coding downstream 125083 25694486 ~ 25694868 (+)
G23139 NA non-coding downstream 199978 25769381 ~ 25775147 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other upstream 77039 25411918 ~ 25447270 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other upstream 149811 25346784 ~ 25374498 (+)
LOC122342019 LOC107758123 other upstream 531091 24983281 ~ 24993218 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 712732 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 993540 24525280 ~ 24530769 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 4354 25573757 ~ 25577043 (+)
LOC122336634 NA other downstream 43756 25613159 ~ 25615905 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other downstream 91645 25661048 ~ 25662317 (+)
LOC122341783 arl16,LOC107583744 other downstream 263102 25832505 ~ 25834198 (+)
G23146 NA other downstream 267740 25837143 ~ 25850576 (+)

Expression


Co-expression Network