LOC122331665 (rsad1,LOC107690008,LOC107755174)


Basic Information

Item Value
gene id LOC122331665
gene name rsad1,LOC107690008,LOC107755174
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25573757 ~ 25577043 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34364
GGTCACGGGACACGCCGCGGATCCAGCTCGACCGCCGTGGCCTGCTGGAGGAGGTTTTGGTCATGGGTCTGCGTATGAACGAAGGGATCACCAAGCAGCACTGGGACCTGTTCAGCCCCGAAGACGACCTGCAACGCATTTTTGGGAGCTCTGAAAAAGTTCAAGAATTTCAAGCGGGGGGACTTGTAACACTTAATGACAAGGGTTTGCGGTGCTCCTGGGAAGGACTGGCTTTACTGGACAGCATCTTACCCACAATGCTGCTGGAATTAGAGGTGTTTTTCAGACAGCAGGACACCAGCAGAAAGACAGAcgtagagagagacagatgaccTTTTGCATCAGAGAAATATGAGAAAGAGATTGACATTGCAAGGCGATGcagaatacagtaaaattaaacaaattgtCCCATGAGGAGAAATATTAAATCTTGAAGAATGAACATTGGTGAGTGATGTGACGCTTGTTTTCTTgttattaattcttttattcacaaatacagtatttttttttctttatgatgAGAATGGTTTTTAATGTCtcaatttttaatgttttttttttatttttggggatgcatgtaaatacatgtgaTATAATCTTGAtgtaata
>XM_043229171.1
ctttattttattcagaacatCAGCGTTCCGTATCTTTGTGACGCGGTGTGTTGCAGTAAAACAGCACCGTGCAGAAAACATGGCTGAAGCGTAAGGTTAACTTCACGTAAAATATGTCGGGGCGAGCATTAACACGACGGCATGCTTTACATCGTTTGGGAACGGGGCTCTCTTCTGTACTGTTGAGATGTATCGGCACTGCTCACGGATCGCCTCCTCACGCGGACGAAGCGTCGCTTTATGTTCACTGGCCCTACTGCCTAAAAAGATGCTCCTACTGCAACTTCAACAAGTACATTGCTCGCAATCCAAACCACGCGGTCATGACGGCATGTCTGCGGAAAGAGACGCGAACCCTGCTGCGGCTCAGCCGGGTCTCCAGGATCAGCTCTGTGTTTTTTGGCGGAGGAACACCCAGCCTGGCTCAGCCCTCCGCAGTCGCCGCCGTCTTGGAGACCGTCTCCAGACACGCTCATCTCTCAGATGAAGCGGAGGTCACTCTGGAGGTCAACCCCACGCCCGCTGGAAAAGCCGGTCTGAAAGACTTCAAGTCCGCAGGAGTCAACCGGTTTTCCGTGGGAGTCCAGTCGCTGAACGATGACCGCCTGAGGACGCTAGGCAGGGATCACGATTCCCGGCACGCTCTCCGGACCGTGTCGGAGGCCAGGACGCTCTGTCCCGGACGCGTCTCGGTGGACGTCATGTTTGCTCTTCCGGGACAAAGTGTGAAGGCGTGGGAGGGCGAGCTGGACGAACTGCTGCCGCTTTGCGACGATCACGTTTCACTGTATCAGCTGACTCTGGAAAGGGGCACGCGGCTTTTCAAGCAGGTGCACGGAGGCGAGCTGAGCGTGCCCGGGGACGACGACGCCGCCGCTATGTACGACTCGGCGCGACGAGTCCTGGAGAAAGCTGGGTTTCGGCAATACGAAGTGTCCAACTTTGCCAGAAATGACGCTGTGGGTGAACATAACGTCGGGTACTGGAAGGGGCGGCAGTACATCGGTGTGGGACCAGGGCGCCACGGACGGTTTGTGCCGCGTGCGTGTGGGAGGAGTTCAGAGGAAGCTCGGACCCAGACTTTAGAACCGGATGTTTGGATGCGAGAGGTTCAGCGTCCACGGTCACGGGACACGCCGCGGATCCAGCTCGACCGCCGTGGCCTGCTGGAGGAGGTTTTGGTCATGGGTCTGCGTATGAACGAAGGGATCACCAAGCAGCACTGGGACCTGTTCAGCCCCGAAGACGACCTGCAACGCATTTTTGGGAGCTCTGAAAAAGTTCAAGAATTTCAAGCGGGGGGACTTGTAACACTTAATGACAAGGGTTTGCGGTGCTCCTGGGAAGGACTGGCTTTACTGGACAGCATCTTACCCACAATGCTGCTGGAATTAGAGGTGTTTTTCAGACAGCAGGACACCAGCAGAAAGACAGAcgtagagagagacagatgaccTTTTGCATCAGAGAAATATGAGAAAGAGATTGACATTGCAAGGCGATGcagaatacagtaaaattaaacaaattgtCCCATGAGGAGAAATATTAAATCTTGAAGAATGAACATTGGTGAGTGATGTGACGCTTGTTTTCTTgttattaattcttttattcacaaatacagtatttttttttctttatgatgAGAATGGTTTTTAATGTCtcaatttttaatgttttttttttatttttggggatgcatgta

Function

symbol description
rsad1 Predicted to enable 4 iron, 4 sulfur cluster binding activity. Predicted to be involved in porphyrin-containing compound biosynthetic process. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human RSAD1 (radical S-adenosyl methionine domain containing 1).

NR:

description
PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial

GO:

id name namespace
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0004109 coproporphyrinogen oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34364 False 615 TUCP 0.42 4 25575976 25577043
XM_043229171.1 True 1708 mRNA 0.53 9 25573757 25577014

Neighbor

gene id symbol gene type direction distance location
spag9a spag9a,LOC107690005,LOC107583630,LOC107670658,LOC107728806 coding upstream 89313 25455160 ~ 25484444 (+)
kdelr2a kdelr2a,kdelr2,LOC107670681,LOC107728665,LOC107555655,LOC108432184,LOC102784720,LOC102215457 coding upstream 119352 25450395 ~ 25454405 (+)
ndufb10 LOC107555654,LOC107583619,LOC107758101 coding upstream 129211 25442610 ~ 25444546 (+)
fahd1 fahd1,LOC107586194,LOC107555652,LOC107586183,LOC107690023 coding upstream 136607 25436163 ~ 25437150 (+)
narfl narfl,LOC107583598 coding upstream 143692 25423943 ~ 25430065 (+)
LOC122336725 LOC107555667,LOC107755177,LOC107583709,LOC107690013,LOC107751312,LOC107670672 coding downstream 9480 25586523 ~ 25604509 (+)
LOC122336618 LOC107690031 coding downstream 32437 25609480 ~ 25611691 (+)
LOC122336676 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding downstream 51856 25628899 ~ 25630633 (+)
LOC122336602 LOC107690031 coding downstream 119828 25696871 ~ 25699105 (+)
LOC122341888 NA coding downstream 127612 25704655 ~ 25706218 (+)
G23106 NA non-coding upstream 54009 25514214 ~ 25519748 (+)
G23069 NA non-coding upstream 139209 25430474 ~ 25434548 (+)
G23096 NA non-coding upstream 152627 25420272 ~ 25421130 (+)
G23095 NA non-coding upstream 153982 25418670 ~ 25419775 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding upstream 179503 25392518 ~ 25394254 (+)
G23125 NA non-coding downstream 54096 25631139 ~ 25767050 (+)
G23127 NA non-coding downstream 57581 25634624 ~ 25727704 (+)
G23126 NA non-coding downstream 70143 25647186 ~ 25725255 (+)
G23135 NA non-coding downstream 117443 25694486 ~ 25694868 (+)
G23139 NA non-coding downstream 192338 25769381 ~ 25775147 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other upstream 4354 25524309 ~ 25569403 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other upstream 126487 25411918 ~ 25447270 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other upstream 199259 25346784 ~ 25374498 (+)
LOC122342019 LOC107758123 other upstream 580539 24983281 ~ 24993218 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 762180 24721526 ~ 24811577 (+)
LOC122336634 NA other downstream 36116 25613159 ~ 25615905 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other downstream 84005 25661048 ~ 25662317 (+)
LOC122341783 arl16,LOC107583744 other downstream 255462 25832505 ~ 25834198 (+)
G23146 NA other downstream 260100 25837143 ~ 25850576 (+)
LOC122341383 tom1l2 other downstream 317547 25894590 ~ 25911625 (+)

Expression


Co-expression Network