LOC122341783 (arl16,LOC107583744)


Basic Information

Item Value
gene id LOC122341783
gene name arl16,LOC107583744
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25832505 ~ 25834198 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34467
CCACGATCAGGAGTCGGTGGTTTTTAAAGAGAAATCCGCGCTCTGCTTTTTATAAAGTCTTTTCGCTGAGATGTGTTTATTGCTCGGTGCCACTGGAGTCGGAAAGACGCTTTTACTGAAGCGGCTACAGAATATCCTTCAGCAGCTGATTTATTACACTCTTTGCATGTTGTGCTTCTCTTGATGTAGTTCTGCTCAGTTTCACGAGTATGTCTTCTTTATCTGGACAAACAGCTGTGTCAGTCGGGCTCTCAGGAGGCTTTGGGTGAAGCTCCTGTCACGCTGCCCACGgTCGGCACCAACCTCACAGACCTCATCCTCAGGAAGAGGAAGATCACGGTTCGAGAGCTGGGGGGCTGTATGGGGCCCATTTGGCCAAAATACTACTTAGATGTCAGATGTGTTTTATTTGTGGTGGACTGTGCCAACGTTGTCCAGATCTCGTCGTCTTGCGTCCAGCTGCTGTCCGTTCTCTCCTCGGAGCCGCTGCAGTCTGCTGCTGTCCTCATACTCTTCAACAAGAGGTCAGCCGACTTCTCTCTGAATAAAAGCAGCGCTCGTTCGCTCCTCACGGCTCTTCTTTCCTCAGGGATCTTCCCTGCACCATGTCTCTGGTGGAGCTGAAGGCGTTGTTCAGGATGGAGGACATCCTCAGGAGTGCTCCTCAGTCGATCTCAACACTGGAGATCAGCGCTCGCTCCGGACAGGGCCTTCAGGAGCTGCTCAGCTGGCTGTTTTCAAAGGACAGATGAGAGAGCTGTGTCCCACGCCACACACTAATCTGAGAAACAGCTGAGGAGAAATGTAGGAGGACCTCTGATGACCGTCATGTCGCTCCAAACCACGTAGCGATGATCAGACGATCATCAGATTGAGATGATTGTGTTGATGtgaatcattcatttcattattatttaagcttttaaatTCTTACATTTGATCTATAAATTCAATTAGCC
>XM_043235398.1
TTGTGTAAACAGCGTCGTTGCCGTGGCGACACAGGAAGTGTATCCACGATCAGGAGTCGGTGGTTTTTAAAGAGAAATCCGCGCTCTGCTTTTTATAAAGTCTTTTCGCTGAGATGTGTTTATTGCTCGGTGCCACTGGAGTCGGAAAGACGCTTTTACTGAAGCGGCTACAGAAGCTGTGTCAGTCGGGCTCTCAGGAGGCTTTGGGTGAAGCTCCTGTCACGCTGCCCACGgTCGGCACCAACCTCACAGACCTCATCCTCAGGAAGAGGAAGATCACGGTTCGAGAGCTGGGGGGCTGTATGGGGCCCATTTGGCCAAAATACTACTTAGATGTCAGATGTGTTTTATTTGTGGTGGACTGTGCCAACGTTGTCCAGATCTCGTCGTCTTGCGTCCAGCTGCTGTCCGTTCTCTCCTCGGAGCCGCTGCAGTCTGCTGCTGTCCTCATACTCTTCAACAAGAGGGATCTTCCCTGCACCATGTCTCTGGTGGAGCTGAAGGCGTTGTTCAGGATGGAGGACATCCTCAGGAGTGCTCCTCAGTCGATCTCAACACTGGAGATCAGCGCTCGCTCCGGACAGGGCCTTCAGGAGCTGCTCAGCTGGCTGTTTTCAAAGGACAGATGAGAGAGCTGTGTCCCACGCCACACACTAATCTGAGAAACAGCTGAGGAGAAATGTAGGAGGACCTCTGATGACCGTCATGTCGCTCCAAACCACGTAGCGATGATCAGACGATCATCAGATTGAGATGATTGTGTTGATGtgaatcattcatttcattattatttaagcttttaaatTCTTACATTTGATCTATAAATTCAATTAGCCCATAATAATGTGTTTGTTATTATCAGTAtctgaaattaaatcatttacagtgaaaaaaaatacaactgcattaaataataatatg

Function

symbol description
arl16 Predicted to enable GTP binding activity. Orthologous to human ARL16 (ADP ribosylation factor like GTPase 16).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 16

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34467 True 959 lncRNA 0.49 3 25832548 25834113
XM_043235398.1 False 921 mRNA 0.47 5 25832505 25834198

Neighbor

gene id symbol gene type direction distance location
LOC122341871 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding upstream 109759 25720847 ~ 25722746 (+)
LOC122341380 NA coding upstream 125358 25706651 ~ 25707147 (+)
LOC122341888 NA coding upstream 126287 25704655 ~ 25706218 (+)
LOC122336602 LOC107690031 coding upstream 133400 25696871 ~ 25699105 (+)
LOC122336676 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding upstream 201872 25628899 ~ 25630633 (+)
LOC122332877 NA coding downstream 2988 25837186 ~ 25840601 (+)
LOC122341789 NA coding downstream 10489 25844687 ~ 25845748 (+)
LOC122342152 NA coding downstream 15360 25849558 ~ 25850619 (+)
LOC122342114 tbl3,LOC107724722 coding downstream 22675 25856873 ~ 25871422 (+)
noxo1a noxo1,LOC107690034,LOC107724744,LOC107559526,LOC107691242,LOC107713950 coding downstream 125315 25959513 ~ 25963209 (+)
G23149 NA non-coding upstream 2061 25828964 ~ 25830444 (+)
G23142 NA non-coding upstream 45482 25779416 ~ 25787023 (+)
G23139 NA non-coding upstream 57358 25769381 ~ 25775147 (+)
G23125 NA non-coding upstream 65455 25631139 ~ 25767050 (+)
G23127 NA non-coding upstream 104801 25634624 ~ 25727704 (+)
G23151 NA non-coding downstream 185 25834383 ~ 25835141 (+)
G23152 NA non-coding downstream 12911 25847109 ~ 25853243 (+)
G23160 NA non-coding downstream 40116 25874314 ~ 25877151 (+)
G23170 NA non-coding downstream 112888 25947086 ~ 25947832 (+)
G23176 NA non-coding downstream 225154 26059352 ~ 26072689 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other upstream 170188 25661048 ~ 25662317 (+)
LOC122336634 NA other upstream 216600 25613159 ~ 25615905 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other upstream 255462 25573757 ~ 25577043 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other upstream 263102 25524309 ~ 25569403 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other upstream 385235 25411918 ~ 25447270 (+)
G23146 NA other downstream 2945 25837143 ~ 25850576 (+)
LOC122341383 tom1l2 other downstream 60392 25894590 ~ 25911625 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other downstream 113856 25948054 ~ 25952747 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other downstream 816631 26650829 ~ 26705731 (+)
ubald2 ubald2,LOC107548684 other downstream 924865 26759063 ~ 26772903 (+)

Expression


Co-expression Network