LOC122341383 (tom1l2)


Basic Information

Item Value
gene id LOC122341383
gene name tom1l2
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25894590 ~ 25911625 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34498
TGTTGTTGTCATCAAGATGGAGTTCTTGTTGGGGAATCCGTACAGCACTCCCGTTGGCCAGTGCATCGAGAAAGCCACAGATGGCTCCCTGCAGAATGAAGACTGGACGCTCAACATGGAGATCTGTGACATCATCAATGAGACCGAGGAAGgGCCTAAAGATGCCATGCGTGCGGTGAAAAAGAGGCTCAACGGCAACAGGAACTTCCGTGAAGTGATGCTGGCTCTTACCGTTCTGGAGACTTGCGTGAAAAACTGCGGCCACCGTTTTCACGTCCACGTCGCCAATAGAGATTTCATCGAAGGCATCTTGGTGAAGATCATCACTCCGAAGACCAACCCTCCGGCTATAGTACAGGACAAAGTGCTGTCACTGATTCAGGCTTGGGCAGATGCCTTCAGGAGCAGCCCGGACCTCACTGGAGTCGTGCACATTTACGAGGAGCTGAAGAGGAAAGGAATTGAGTTCCCGATGGCAGACCTGGATGCTTTGTCGCCCATCCACACGCC
>TU34502
tttgtttgtgtgtacagATCGCAAGGCTGAGAAGTGAGCTGGACGTTGTGCGTGGGAATATTAAAGTGATGTCGGAGATGCTGACAGAGATGGTGCCGGGCCAAGAAGACGCCTCTGACCTCGAGCTACTCCAGGAGCTGAACAGGACGTGTCGAGCCATGCAGCACAGAGTAGTGGAGCTCATCTCCCGCGTGTCTAATGAAGAGGTCACCGAAGAGCTGCTGCACGTCAACGATGATTTAAACAACATCTTCCTGCGTTACGAGAGGTATGAGAGATACAGAGTAGGCAGAGCAGCACAAAACAACGGGGTCCTGAATGAGGCTTCAGAGGAGGATAATCTAATAGATCTGGGTCCTGCTTCTCCAGCAGTGGTCACTCCTCGAGGTCAGCACTACACCCACTCGTACACCCACATCCACCCTTCAGCCCGCTCCCC
>XM_043234716.1
GCCAATCACAGAGCGCTCTGGGCGGGGCTTACGCGCGCCGTCCGCCAGCCTCTCCGTGTCGGCGGATTGTTGTTGTCATCAAGATGGAGTTCTTGTTGGGGAATCCGTACAGCACTCCCGTTGGCCAGTGCATCGAGAAAGCCACAGATGGCTCCCTGCAGAATGAAGACTGGACGCTCAACATGGAGATCTGTGACATCATCAATGAGACCGAGGAAGgGCCTAAAGATGCCATGCGTGCGGTGAAAAAGAGGCTCAACGGCAACAGGAACTTCCGTGAAGTGATGCTGGCTCTTACCGTTCTGGAGACTTGCGTGAAAAACTGCGGCCACCGTTTTCACGTCCACGTCGCCAATAGAGATTTCATCGAAGGCATCTTGGTGAAGATCATCACTCCGAAGACCAACCCTCCGGCTATAGTACAGGACAAAGTGCTGTCACTGATTCAGGCTTGGGCAGATGCCTTCAGGAGCAGCCCGGACCTCACTGGAGTCGTGCACATTTACGAGGAGCTGAAGAGGAAAGGAATTGAGTTCCCGATGGCAGACCTGGATGCTTTGTCGCCCATCCACACGCCTACAGCGGGTCAGAAACCGCACAGCTTCCGCCCACACCAGGGTGTCCCAGAGGTAGATCCAGGCACGCACAAGTACAGAGCGTCTGCTCAGCCAAACGCGGCGTCTCAGACGGGCCCTACACCTGCAGCTGCCGCCACAGCTGACTTCAACCCCGCCCAGATCCCACCCGTATCAGGACCCATCACAGCAAACCCAGAGCAGATCGCAAGGCTGAGAAGTGAGCTGGACGTTGTGCGTGGGAATATTAAAGTGATGTCGGAGATGCTGACAGAGATGGTGCCGGGCCAAGAAGACGCCTCTGACCTCGAGCTACTCCAGGAGCTGAACAGGACGTGTCGAGCCATGCAGCACAGAGTAGTGGAGCTCATCTCCCGCGTGTCTAATGAAGAGGTCACCGAAGAGCTGCTGCACGTCAACGATGATTTAAACAACATCTTCCTGCGTTACGAGAGGTATGAGAGATACAGAGTAGGCAGAGCAGCACAAAACAACGGGGTCCTGAATGAGGCTTCAGAGGAGGATAATCTAATAGATCTGGGTCCTGCTTCTCCAGCAGTGGTCACTCCTCGAGCCCGCTCCCCTGCTCCTGCTGCAGCGTCTCTCTCCACGCAGCTTGCTGGACTCGGTGAGGGCCTCCACAGCGTCAGCGGCACTCTCAGCTCTCTGAGCGCTCACAACCCTCAGGACGACTTTGACATGTTCGCCCACACCAGGTCCAGCTCTCTGGCGACCAGCGCAAAAAGTGACGTTAAATATGAAGAACCTCAGGCTCTGGTGGGCCTGGCATCCGCTTTGGACATCAGACAGCAAAATGCCACTGGGGTGAGTTTCTTACAGCATGGTTCTTCTGAAGATGGAGGTCTATATGTGTTTGTGGTGGGtgctttgttcttcttcttcttcttcttcttcacatcTGTAAGGTGTTTTCTGTTGTTGATTTGCTTGAATGTAAAAGGTCCTAACGCTGAGTTGGAGCCCATAGACAGCTGGCTCATTACCCAAGGAATGGTGAGGGATTTCACCCAGAACCACTGCTCCCCACGTGTCCACCCGTCCGTCCACTCAGCCCTGGCCTGCGCTCTCCATCCCTCGCCTCCCACCACCACTTCAAAACATACCCACAGTAAAGGGGAGAGGCGCTCCAGTGATCCTGATCTGATCACGCTCGGAGGAGATCAGCCAAAACACGAAAAATCTGGTTTTATTTACCCGTCCTCACGTCGTTCCAAAGTTCTGTGCCGCTGCTTTTCCAAGAAAGCGTCTCTTTTCTCGTGA

Function

symbol description
tom1l2 Predicted to enable clathrin binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within intracellular protein transport. Predicted to be integral component of membrane. Predicted to be active in endosome and membrane. Orthologous to human TOM1L2 (target of myb1 like 2 membrane trafficking protein).

NR:

description
PREDICTED: TOM1-like protein 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34498 False 510 TUCP 0.53 5 25894657 25906335
TU34502 False 439 TUCP 0.53 4 25907165 25909176
XM_043234716.1 True 1856 mRNA 0.55 14 25894590 25911625

Neighbor

gene id symbol gene type direction distance location
LOC122342114 tbl3,LOC107724722 coding upstream 23168 25856873 ~ 25871422 (+)
LOC122342152 NA coding upstream 43971 25849558 ~ 25850619 (+)
LOC122341789 NA coding upstream 48842 25844687 ~ 25845748 (+)
LOC122332877 NA coding upstream 53989 25837186 ~ 25840601 (+)
LOC122341871 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding upstream 171844 25720847 ~ 25722746 (+)
noxo1a noxo1,LOC107690034,LOC107724744,LOC107559526,LOC107691242,LOC107713950 coding downstream 47888 25959513 ~ 25963209 (+)
LOC122341386 NA coding downstream 74653 25986278 ~ 25988109 (+)
LOC122341388 tom1l2 coding downstream 112592 26024217 ~ 26038893 (+)
srebf1 srebf1,LOC107691218,LOC107713935 coding downstream 130188 26041813 ~ 26058332 (+)
LOC122341389 NA coding downstream 446631 26358256 ~ 26358813 (+)
G23160 NA non-coding upstream 17439 25874314 ~ 25877151 (+)
G23152 NA non-coding upstream 41347 25847109 ~ 25853243 (+)
G23151 NA non-coding upstream 59449 25834383 ~ 25835141 (+)
G23149 NA non-coding upstream 64146 25828964 ~ 25830444 (+)
G23142 NA non-coding upstream 107567 25779416 ~ 25787023 (+)
G23170 NA non-coding downstream 35461 25947086 ~ 25947832 (+)
G23176 NA non-coding downstream 147727 26059352 ~ 26072689 (+)
G23189 NA non-coding downstream 219977 26131602 ~ 26133830 (+)
G23508 NA non-coding downstream 267607 26179232 ~ 26191842 (+)
G23550 LOC107691223,LOC107724726,LOC107713954,LOC107548703,LOC107665916 non-coding downstream 516594 26428219 ~ 26435848 (+)
G23146 NA other upstream 44014 25837143 ~ 25850576 (+)
LOC122341783 arl16,LOC107583744 other upstream 60392 25832505 ~ 25834198 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other upstream 232273 25661048 ~ 25662317 (+)
LOC122336634 NA other upstream 278685 25613159 ~ 25615905 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other upstream 317547 25573757 ~ 25577043 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other downstream 36429 25948054 ~ 25952747 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other downstream 739204 26650829 ~ 26705731 (+)
ubald2 ubald2,LOC107548684 other downstream 847438 26759063 ~ 26772903 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other downstream 886806 26798431 ~ 26801401 (+)
G23695 NA other downstream 935098 26846723 ~ 26847357 (+)

Expression


Co-expression Network