G23840


Basic Information

Item Value
gene id G23840
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27249425 ~ 27252114 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU35575
ATCTTTTCATTCCTCCTccacattattatatttatgagtACTATGATTCATCTCACCATCCGGAGAGCCTGGCAGGACGTCCGTGGAGCCGAGGTGAGCTCTGCTGCTGCATGCTGGGATAGCTCTGGCTGAGCTGACAGGCAGGGCGTGACACGGGGCGGGGGTAGGAGGAGGTGCCCAGCGGGGCATGTGGGTGATTCCCTCCTCCTCCAGTTGTTTGAGATGAAATTCAATAATCTCTTTTCCCTgtggagaaagagagcgagacaAACAGAGAGTGATACCAGAGTTTACACAAATGAAACAAGCAAACATTGGCTTTAGGTACACAGACAGATGAAGATACTCTTACACGCAAGTCATAATAACGGCAAAACAGATCCTCATAAACATGAAGGAAGCAGGAAGAGGAGCCTTGAAAATAAAACGAGACCCTGAAAGGTCAGGGTAATGGAACATAATAAGATACAACTCTTTCGCTTGCGCAAGTTTTGCATTCCTctcacaaaatgttttgcaagCAAACACAGAAGTGCTGAGGGAAATACTACAGGACTTCATTCCATATACACTGTTTCTTAAAGAATGCAATACTTTTCAGAACAAAAGTGTGAGATGCTACACATCGCAGACCAGGAGAAAGTTGAGGGGTGGACTTCAAGGTTAAAATCAAAGAGATGTGACAAAAAAGTCACATGCAGACACGCACACCTTTTTAATACTGGTGGCGTACTGCTTCATTGCAATCTTCTCTGCTGTGCTCTCAAATCCGAAAAAGGATTTAATGTCCATGCTGGCAGACTGCTCAAAACAGGTCCAGTCTTCATTCTCTGGGTGAA

Function

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0031667 response to nutrient levels biological_process
GO:0001889 liver development biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU35575 True 839 lncRNA 0.45 2 27249425 27252114

Neighbor

gene id symbol gene type direction distance location
nptx1l nptx1l,LOC107569544,LOC107665615,LOC107684232,LOC104929529 coding upstream 64833 27179078 ~ 27184592 (+)
cdr2l cdr2l,LOC107743016,LOC107665638,LOC107748864 coding upstream 229532 27007494 ~ 27019893 (+)
recql5 recql5 coding upstream 241622 26990895 ~ 27007803 (+)
LOC122341528 si:ch211-120g10.1,si:ch73-364h19.2,LOC107665693,LOC107548722,LOC107558873,LOC107748865,LOC107654584,LOC108435881,LOC107743034 coding upstream 259394 26983161 ~ 26990031 (+)
si:ch73-364h19.1 si:ch73-364h19.1,LOC107665706,LOC107743014,LOC107654587,LOC107558872 coding upstream 267528 26972744 ~ 26981897 (+)
LOC122334820 mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677 coding downstream 55526 27307640 ~ 27386062 (+)
LOC122335316 NA coding downstream 183698 27435812 ~ 27438843 (+)
rasd4 zgc:153845,LOC103035404,LOC108435855,LOC103354899 coding downstream 206677 27458791 ~ 27460139 (+)
LOC122334777 NA coding downstream 223211 27475325 ~ 27488357 (+)
LOC122334614 LOC107562032 coding downstream 281730 27533844 ~ 27556530 (+)
G23713 NA non-coding upstream 195631 27049688 ~ 27053794 (+)
G23733 mcrip1,fam195b,LOC107654575 non-coding upstream 201900 27046938 ~ 27047525 (+)
G23712 LOC107558876 non-coding upstream 205043 27029868 ~ 27044382 (+)
G23727 NA non-coding upstream 211780 27023328 ~ 27037645 (+)
G23714 LOC107665665,LOC106606967 non-coding upstream 226691 27012599 ~ 27022734 (+)
G23869 NA non-coding downstream 210885 27462999 ~ 27463302 (+)
LOC122335648 NA non-coding downstream 220740 27472854 ~ 27475070 (+)
G23886 NA non-coding downstream 278575 27530689 ~ 27533823 (+)
G23909 NA non-coding downstream 434780 27686894 ~ 27689858 (+)
G23873 LOC107732158,LOC107562041,LOC107731674,LOC107573385,LOC107562032,LOC107710688,LOC107726817,LOC107676321 non-coding downstream 452063 27704177 ~ 27816189 (+)
G23695 NA other upstream 402068 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 448024 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 476522 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 543694 26650829 ~ 26705731 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other upstream 1296678 25948054 ~ 25952747 (+)
LOC122335546 NA other downstream 29713 27281827 ~ 27282406 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 1263529 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 1340690 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 1454917 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 1546200 28798314 ~ 28808828 (+)

Expression


Co-expression Network