LOC122335546


Basic Information

Item Value
gene id LOC122335546
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27281827 ~ 27282406 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU35581
AGCAACTTCTTGGTAGAGAATTGACTCAGCGATGCAGAGCTACTCAGTGCATGGGGGGATCCCGATGAAGGACCAGGGAGCCCCGATCGCCCAGCAAGTTGTGGTGTCCATGCCTGACCAAAGAGTCAGTGATGATATCATCTTCTCTACATTCAACCTTCACTTCTTTAACCCTTGCTGTCTGGGGTTCGGGGCCTTCTACAACTCGATAAAGGCCAGGGACAGCAGATATCTTGGAGACTTTTCAAAGGCACGTCAGTATGGCGCTCGAGCTCGCCGATTAAACATCGCTGCAGTCATTATTGGTTGCATCAGTGTACTTactgtcatcatcatcatcgttaCAATGAAGAACAACAGTGAAGCTACTTTACCATACCATTATCGTCAATAATTGCTGATTTTGAAATATACTTCTTGTCTGTATTTCCTTTGATTTTCCTAAAACCTTTCATTAAAACATATCTGTTGAAACTGTA
>XM_043233411.1
AACGCTTGAAGACCTCACAGAGAGCAACTTCTTGGTAGAGAATTGACTCAGCGATGCAGAGCTACTCAGTGCATGGGGGGATCCCGATGAAGGACCAGGGAGCCCCGATCGCCCAGCAAGTTGTGGTGTCCATGCCTGACCAAAGAGTCAGTGATGATATCATCTTCTCTACATTCAACCTTCACTTCTTTAACCCTTGCTGTCTGGGGTTCGGGGCCTTCTACAACTCGATAAAGGCCAGGGACAGCAGATATCTTGGAGACTTTTCAAAGGCACGTCAGTATGGCGCTCGAGCTCGCCGATTAAACATCGCTGCAGTCATTATTGGTTGCATCAGTGTACTTactgtcatcatcatcatcgttaCAATGAAGAACAACAGTGAAGCTACTTTACCATACCATTATCGTCAATAATTGCTGATTTTGAAATATACTTCTTGTCTGTATTTCCTTTGATTTTCCTAAAACCTTTCATTAAAACATATCTGTTGAAACTGTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06566 IFITM; interferon induced transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU35581 False 479 TUCP 0.44 2 27281849 27282406
XM_043233411.1 True 501 mRNA 0.44 2 27281827 27282406

Neighbor

gene id symbol gene type direction distance location
nptx1l nptx1l,LOC107569544,LOC107665615,LOC107684232,LOC104929529 coding upstream 97235 27179078 ~ 27184592 (+)
cdr2l cdr2l,LOC107743016,LOC107665638,LOC107748864 coding upstream 261934 27007494 ~ 27019893 (+)
recql5 recql5 coding upstream 274024 26990895 ~ 27007803 (+)
LOC122341528 si:ch211-120g10.1,si:ch73-364h19.2,LOC107665693,LOC107548722,LOC107558873,LOC107748865,LOC107654584,LOC108435881,LOC107743034 coding upstream 291796 26983161 ~ 26990031 (+)
si:ch73-364h19.1 si:ch73-364h19.1,LOC107665706,LOC107743014,LOC107654587,LOC107558872 coding upstream 299930 26972744 ~ 26981897 (+)
LOC122334820 mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677 coding downstream 25234 27307640 ~ 27386062 (+)
LOC122335316 NA coding downstream 153406 27435812 ~ 27438843 (+)
rasd4 zgc:153845,LOC103035404,LOC108435855,LOC103354899 coding downstream 176385 27458791 ~ 27460139 (+)
LOC122334777 NA coding downstream 192919 27475325 ~ 27488357 (+)
LOC122334614 LOC107562032 coding downstream 251438 27533844 ~ 27556530 (+)
G23840 NA non-coding upstream 29713 27249425 ~ 27252114 (+)
G23713 NA non-coding upstream 228033 27049688 ~ 27053794 (+)
G23733 mcrip1,fam195b,LOC107654575 non-coding upstream 234302 27046938 ~ 27047525 (+)
G23712 LOC107558876 non-coding upstream 237445 27029868 ~ 27044382 (+)
G23727 NA non-coding upstream 244182 27023328 ~ 27037645 (+)
G23869 NA non-coding downstream 180593 27462999 ~ 27463302 (+)
LOC122335648 NA non-coding downstream 190448 27472854 ~ 27475070 (+)
G23886 NA non-coding downstream 248283 27530689 ~ 27533823 (+)
G23909 NA non-coding downstream 404488 27686894 ~ 27689858 (+)
G23873 LOC107732158,LOC107562041,LOC107731674,LOC107573385,LOC107562032,LOC107710688,LOC107726817,LOC107676321 non-coding downstream 421771 27704177 ~ 27816189 (+)
G23695 NA other upstream 434470 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 480426 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 508924 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 576096 26650829 ~ 26705731 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other upstream 1329080 25948054 ~ 25952747 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 1233237 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 1310398 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 1424625 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 1515908 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 1561408 28843814 ~ 28846375 (+)

Expression


Co-expression Network