G23873 (LOC107732158,LOC107562041,LOC107731674,LOC107573385,LOC107562032,LOC107710688,LOC107726817,LOC107676321)


Basic Information

Item Value
gene id G23873
gene name LOC107732158,LOC107562041,LOC107731674,LOC107573385,LOC107562032,LOC107710688,LOC107726817,LOC107676321
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27704177 ~ 27816189 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU35622
gagcttttctgcagttCCTGAGAGCGGGTAACAGTCTCTGACTCCCACCTTTTGATTTAATGGTGAATTTTTTAACATCAAACTCATCCAGCACCTCCTCTGACATCAGGATTATGTTTGCCAAAGTTGAGCATTGTGCAAGAGAaagacgtttttttgttttTTTAAAAATGCCTGCATTTCTTCAACAACTGAGTTATCCTTCATCTCAATCAAACAGTGTGTCAGATTTATCCATCTTTCAGGACTAACATTGGTTTTTTGACCTCGTTTGAGGttgtggattatttttttaatgctctctgggtttttctctgtgtgtatcAGAACATCctgtaagagtctctgattggactCCAGTGAGATGCCATGAAGAAATCGAAGGAAAAGATCCAGGTGTCCATTTTTACTCTGCAAGGCTTTATTTATTGCTCCCTTAAGAAGCACATCCACATTCTCACAATGGGATCTGGACTTTCCTATCAGGAACATTTTCAGAACCTCactgtttttgtgtaaataacagtaaaacacaTACAGTGCTGCAAAAAACTCTTGAAAGCTCAGATGCACAAAGCTGTAAACCTTCCTTTGATGAATCACAGACTCCTCTCTAAAGATCTCAGTGCAGATCCCAGAATACACTGAAGCATCAGTGACGTCTATGTCGCTCTCTCTCAGGTCCTCCTCATAAAACATCACATTGCCCTTCATTAGCTGATTGAAAGCCAGTTCAGCAAGTTTCACAACCACTTCTCTGTTGGACTTCAGGAGTTTCTCTGAATGTCTCCGTTCATACTTCTGGTTCCTCATGTTTGTTTGAATGAGCAGGAAGTagatgtacatttcagtcagagtttgagggATTTCTGCATCTTGTTTCAGGATGTTTTGAAGCACagtggctgagatccagcagaagacggggatgtgacacatgatgtGGAGGCTTCTTGCTCTTCTGATATTTGAGATGATCCTGCTGGCTTGATGCTCATCGCTGATTctcttcctgaaatattcctccttctgaggGTCACTGAATCCCTGAATTTCTGTCACACGGTTTATGTAGTCAGaggggatctgattggctgctgctggtctggtggtgatccagatgagagcagagggaagtAGATCTCCTTTCATCAGGTTTGATATCAACAGACCCAATGATGATATCTGAGCCACATCAGAAACTTTCTGACTGTCTGAAAACATCAGTGAgattctgctttcatccagaccatcaaagatgaacacaactcTACATTCATCGTAAATCTTTGGGTCCAGATCTTGAAGTTCAGAATGAAAGTCCagcagaagtctgtgaagactgtactgatgatctttaatcaagttcagctctcgaaatgtaaaaacaaacatgaaatctacatcctgattggcttttccctcggcccagtccagaatgaacttctgcacagagacagtttttccaattccagcgatgcctttagtaagaacagtctttattttgtttttcatctcttttctaATCTCCTCATCTGCTGGTTCATGTGAAGGATTAAAGATGTCATTGCAGTTGATTGGAGTGTCTTGAAgtatcctgtaacctttctcaATCTGTAGCacctcatgttcttcattcactccttcactctctccctctatgATGTACAACTGTGTGTAAATCCTGTTCAGGAGGGTTTGATTCTCTTGTAGTTTGACTCCCTCAAATAAGCTTTCGTACTTTTTCTTCATGCTGGTTTTGTGCTGGTCTTTGACTCTCTGTAGATCATTAAGTACTGGTTGATGAGAATCGAGCTTCAGATCTGCTTCTGTGTCAGAATGACTGAAGTGGTTCTGACTGTAGGAGTATGGGAAGGTCTGTGAAGGTGCCATACa
>TU35624
ATGTTTGTTTGAATGATCAGGAAGTagatgtacatttcagtcagagtttgagggATTTCTGCATCTTGTTTCAGGATGTTTTGAAGCACagtggctgagatccagcagaagacggggatgtgacacatgatgtGGAGGCTTCTTGCTCTTCTGATATTTGAGATGATCCTGCTGGCTTGATGCTCATCACTGATTctcttcctgaaatattcctccttctgaggGTCACTGAATCCCTGAATTTCTGTCACACGGTTTATGTAGTCAGaggggatctgattggctgctgctggtctggtggtgatccagatgagagcagagggaagtAGATCTCCTTTCATCAGGTTTGATATCAACAGACCCAATGATGATATCTGAGCCACATCAGAAACTTTCTGACTGTCTGAAAACATCAGTGAgattctgctttcatccagaccatcaaagatgaacacaactcTACATTCATCGTAAATCTTTGGGTCCAGATCTTGAAGTTCATAATGAAAGTCCagcagaagtctgtgaagactgtactgatgatctttaatcaagttcagctctcgaaatgtaagaacaaacatgaaatctacatcctgattggcATTTCCCTCGgcccagtccagaatgaacttctgcacagagacagtttttccaattccagcgatgcctttagtaagaacagtctttattttgtctttcatcTCTTTTCTAATCTCATCTACTGGTTCATGTGAAGGATTAAAGATGTCATTGCAGTTGATTGGAGTATCTTGAAGTTCAGAATGAAAGTCCagcagaagtctgtgaagactgtactgatgatctttaatcaagttcagctctcgaaatgtaaaaacaaacatgaaatctacatcctgattggcttttccctcggcccagtccagaatgaacttctgcacagagacagtttttccaattccagcgatgcctttagtaagaacagtctttattttgtttttcatctcttttctaATCTCCTCATCTGCTGGTTCATGTGAAGGATTAAAGATGTCATTGCAGTTGATTGGAGTGTCTTGAAgtatcctgtaacctttctcaATCTGTAGCacctcatgttcttcattcactccttcactctctccctctatgATGTACAACTGTGTGTAAATCCTGTTCAGGAGGGTTTGATTCTCTTGTAGTTTGACTCCCTCAAATAAGCTTTCGTACTTTTTCTTCATGCTGGTTTTGTGCTGGTCTTTGACTCTCTGTAGATCATTAAGTACTGGTTGATGAGAATCGAGCTTCAGATCTGCTTCTGTGTCAGAATGACTGAAGTGGTTCTGACTGTAGGAGTATGGGAAGGTCTGTGAAGGTGCCATACa

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35622 True 1896 lncRNA 0.41 2 27753439 27816189
TU35624 False 1367 lncRNA 0.41 3 27704177 27816189

Neighbor

gene id symbol gene type direction distance location
LOC122334614 LOC107562032 coding upstream 147647 27533844 ~ 27556530 (+)
LOC122334777 NA coding upstream 215820 27475325 ~ 27488357 (+)
rasd4 zgc:153845,LOC103035404,LOC108435855,LOC103354899 coding upstream 244038 27458791 ~ 27460139 (+)
LOC122335316 NA coding upstream 265334 27435812 ~ 27438843 (+)
LOC122334820 mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677 coding upstream 318115 27307640 ~ 27386062 (+)
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding downstream 135562 27951751 ~ 27952457 (+)
LOC122334736 LOC107702828 coding downstream 220231 28036420 ~ 28068099 (+)
LOC122341391 LOC107758342 coding downstream 500411 28316600 ~ 28319709 (+)
cacng5b cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158 coding downstream 836904 28653093 ~ 28658489 (+)
LOC122341396 NA coding downstream 895514 28711703 ~ 28714513 (+)
G23909 NA non-coding upstream 14319 27686894 ~ 27689858 (+)
G23886 NA non-coding upstream 170354 27530689 ~ 27533823 (+)
LOC122335648 NA non-coding upstream 229107 27472854 ~ 27475070 (+)
G23869 NA non-coding upstream 240875 27462999 ~ 27463302 (+)
G23840 NA non-coding upstream 452063 27249425 ~ 27252114 (+)
G23931 NA non-coding downstream 125993 27942182 ~ 27945216 (+)
LOC122335654 NA non-coding downstream 218211 28034400 ~ 28036158 (+)
G23953 NA non-coding downstream 410886 28227075 ~ 28235536 (+)
LOC122335640 NA non-coding downstream 503521 28319710 ~ 28320156 (+)
G23964 NA non-coding downstream 512276 28328465 ~ 28329411 (+)
LOC122335546 NA other upstream 421771 27281827 ~ 27282406 (+)
G23695 NA other upstream 856820 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 902776 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 931274 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 998446 26650829 ~ 26705731 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 699454 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 776615 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 890842 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 982125 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 1027625 28843814 ~ 28846375 (+)

Expression


Co-expression Network