LOC122341401


Basic Information

Item Value
gene id LOC122341401
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29048278 ~ 29054414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36200
AAAAGAAAGACAGTTTATGAAAAAGCTGTGACAAAAAGACGTCTAGAGCAGGAAAGAGCTAAAACCCGAGTTAACATCGGAGTTGCTTTTCCACGCTGGAGACAACTGCGAGAGTCAAAGTGTCTGAAAACAGATGCCATGGTTGCACTTTTTCTTCTGGACAGTTACGAGAAAAGTACAACATCCACATTTTTGGAGCATGATTTCATAAAGCCACCGCCACCAGAGTCTTCCTACGAAGAGTCTGAAATCAAGTTTCTCGtcaaggaggaagaggaggagaaaccTGCCTGTAAAAATTGAGAGTTTATGATGAGAGCGAGAAGGATACTTTTGTTGGTGCTCGGACAACAGCATCTCTGGGATTCAGCCGTGTGTCTGTGAAGAGCAACAGATATTCCCCCTGATCTCAGTGAACTCTGACTCTCTGTTCACGTTGAGGATCAACGAGTGCTTCTCAAAGGTCCAGATCAGCAGAAGAAGTGGGTAGATGGTGAAAGGAAGGACTCTGGCCTGAAACAACCGTGTTGCCACCTCCATTGAGACTGGATTTCAActgacaaaatgattaaatctaCTATATATTCTGCTCAGGAGAGTTTTTCAATCTGTCAGTTTTAATACGGTACTCATGATTGTTCATGTCTTTCATCAAGTTATTAATGCTACAGTATGATACTCATGTAAACATTCTTGCAGATTGTGGGAGAGTTTTCTTTATGTATTGATGGTGGTTAATAATTCACTTGTTTTACAACAATAGTCCAGTCTTTTTGAAGagttttctaaatgtaataGTTACATGTAACAGCAAATACACAACACTTTGGATTCATCTCAATCTTTATGTATAAAGAAGAAACTACTGTCTTGTAGCAAAAATGTAACTTGTGGCATTTAGCAATAGCCTAAtggacatatttattaaaacatgttatCGAG
>TU36201
AAAAGAAAGACAGTTTATGAAAAAGCTGTGACAAAAAGACGTCTAGAGCAGGAAAGAGCTAAAACCCGAGTTAACATCGGAGTTGCTTTTCCACGCTGGAGACAACTGCGAGAGTCAAAGTGTCTGAAAACAGATGCCATGGTTGCACTTTTTCTTCTGGACAGTTACGAGAAAAGTACAACATCCACATTTTTGGAGCATGATTTCATAAAGCCACCGCCACCAGAGTCTTCCTACGAAGAGTGAGTACAGTGTGAGAACCCTGGGCATCCGAAGGAGAACCATTCTTATATtcttgtatgtttgtatgttctCTGTTGCAACATACAGGTCTGAAATCAAGTTTCTCGtcaaggaggaagaggaggagaaaccTGCCTGTAAAAATTGAGAGTTTATGATGAGAGCGAGAAGGATACTTTTGTTGGTGCTCGGACAACAGCATCTCTGGGATTCAGCCGTGTGTCTGTGAAGAGCAACAGATATTCCCCCTGATCTCAGTGAACTCTGACTCTCTGTTCACGTTGAGGATCAACGAGTGCTTCTCAAAGGTCCAGATCAGCAGAAGAAGTGGGTAGATGGTGAAAGGAAGGACTCTGGCCTGAAACAACCGTGTTGCCACCTCCATTGAGACTGGATTTCAActgacaaaatgattaaatctaCTATATATTCTGCTCAGGAGAGTTTTTCAATCTGTCAGTTTTAATACGGTACTCATGATTGTTCATGTCTTTCATCAAGTTATTAATGCTACAGTATGATACTCATGTAAACATTCTTGCAGATTGTGGGAGAGTTTTCTTTATGTATTGATGGTGGTTAATAATTCACTTGTTTTACAACAATAGTCCAGTCTTTTTGAAGagttttctaaatgtaataGTTACATGTAACAGCAAATACACAACACTTTGGATTCATCTCAATCTTTATGTATAAAGAAGAAACTACTGTCTTGTAGCAAAAATGTAACTTGTGGCATTTAGCAATAGCCTAAtggacatatttattaaaacatgttatCGAG
>XM_043234732.1
ATGACCAAGAGATACAACAACAcgggggactgctctctcgaggaatatACAGGACTATTCCTCCACCTCGCCAACGACTCCcgttacccggacagctttctgtgcggaatCTACTTCCACGGACTTAACATCTCCAGTcaggcgcagctgtccgggagcggtcctcagGAGAGCATCGCCGcttacgtcgaCTCGAGAATGGAAGGCAAACAGAACAGGacccaaaatataaaacaagcagaagaagaagaggagcaGAAGTGTCTTTCCTTTCCTTCTGAGCCGATACTAAACGGAGCACGCAAACGCTCGAAAAGAAAGACAGTTTATGAAAAAGCTGTGACAAAAAGACGTCTAGAGCAGGAAAGAGCTAAAACCCGAGTTAACATCGGAGTTGCTTTTCCACGCTGGAGACAACTGCGAGAGTCAAAGTGTCTGAAAACAGATGCCATGGTTGCACTTTTTCTTCTGGACAGTTACGAGAAAAGTACAACATCCACATTTTTGGAGCATGATTTCATAAAGCCACCGCCACCAGAGTCTTCCTACGAAGAGTCTGAAATCAAGTTTCTCGtcaaggaggaagaggaggagaaaccTGCCTGTAAAAATTGAGAGTTTATGATGAGAGCGAGAAGGATACTTTTGTTGGTGCTCGGACAACAGCATCTCTGGGATTCAGCCGTGTGTCTGTGAAGAGCAACAGATATTCCCCCTGATCTCAGTGAACTCTGACTCTCTGTTCACGTTGAGGATCAACGAGTGCTTCTCAAAGGTCCAGATCAGCAGAAGAAGTGGGTAGATGGTGAAAGGAAGGACTCTGGCCTGAAACAACCGTGTTGCCACCTCCATTGAGACTGGATTTCAActgacaaaatgattaaatctaCTATATATTCTGCTCAGGAGAGTTTTTCAATCTGTCAGTTTTAATACGGTACTCATGATTGTTCATGTCTTTCATCAAGTTATTAATGCTACAGTATGATACTCATGTAAACATTCTTGCAGATTGTGGGAGAGTTTTCTTTATGTATTGATGGTGGTTAATAATTCACTTGTTTTACAACAATAGTCCAGTCTTTTTGAAGagttttctaaatgtaataGTTACATGTAACAGCAAATACACAACACTTTGGATTCATCTCAATCTTTATGTATAAAGAAGAAACTACTGTCTTGTAGCAAAAATGTAACTTGTGGCATTTAGCAATAGCCTAAtggacatatttattaaaacatgttatCGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36200 False 942 lncRNA 0.39 4 29052432 29054413
TU36201 False 1030 lncRNA 0.39 3 29052432 29054413
XM_043234732.1 True 1255 mRNA 0.42 6 29048278 29054414

Neighbor

gene id symbol gene type direction distance location
fscn2a fscn2a,LOC107710702,LOC107556620,LOC107729215,LOC107568593 coding upstream 85736 28957657 ~ 28962542 (+)
otop2 otop2,LOC107710699,LOC107698768,LOC107556602,LOC107729200,LOC107664425 coding upstream 217542 28826613 ~ 28830736 (+)
amn amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding upstream 230176 28816578 ~ 28818102 (+)
LOC122335014 LOC107698764,LOC107710694,LOC107556592,LOC107729203 coding upstream 250519 28793052 ~ 28797759 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding upstream 259211 28785532 ~ 28789067 (+)
LOC122334787 NA coding downstream 160713 29215127 ~ 29225079 (+)
LOC122335520 LOC107675901,LOC107732152 coding downstream 170578 29224992 ~ 29228086 (+)
notum1a notum,notum1a,LOC107732149,LOC107671240,LOC108438914 coding downstream 220239 29274653 ~ 29283738 (+)
LOC122335289 myadml2,LOC107671249,LOC107675441,LOC107717480,LOC107571305,LOC107552108,LOC107732151 coding downstream 230278 29284692 ~ 29287182 (+)
pycr1a pycr1a,pycr1,LOC107732146,LOC107675279,LOC107717481,LOC107671247,LOC107571301,LOC107552109 coding downstream 233724 29288138 ~ 29291444 (+)
G24270 NA non-coding upstream 29775 29009482 ~ 29018503 (+)
G24267 NA non-coding upstream 33370 28968515 ~ 29014908 (+)
G24268 NA non-coding upstream 61848 28986137 ~ 28986430 (+)
G24176 NA non-coding upstream 179204 28868794 ~ 28869074 (+)
G24175 NA non-coding upstream 180242 28867616 ~ 28868036 (+)
G24278 NA non-coding downstream 66332 29120746 ~ 29126066 (+)
G24286 NA non-coding downstream 76749 29131163 ~ 29141577 (+)
G24317 LOC107732144,LOC107572667,LOC107674215,LOC107571308,LOC107571307,LOC107674125,LOC107671260,LOC107732141 non-coding downstream 140676 29195090 ~ 29203809 (+)
G24359 NA non-coding downstream 217618 29272032 ~ 29272318 (+)
G24386 NA non-coding downstream 258315 29312729 ~ 29318597 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other upstream 115194 28869079 ~ 28933084 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other upstream 201903 28843814 ~ 28846375 (+)
LOC122341400 NA other upstream 239450 28798314 ~ 28808828 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other upstream 339670 28707031 ~ 28708608 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other upstream 397628 28592804 ~ 28650650 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other downstream 6361 29060775 ~ 29073755 (+)
cenpx stra13,LOC107676172,LOC107689848,LOC107732147,LOC107552128 other downstream 174302 29228716 ~ 29230231 (+)
LOC122335232 LOC107677928 other downstream 244294 29298708 ~ 29306240 (+)
LOC122335632 NA other downstream 337504 29391918 ~ 29402603 (+)
LOC122335508 LOC107717477,LOC107698766,LOC107552107,LOC107671248,LOC107740236 other downstream 385535 29439949 ~ 29442973 (+)

Expression


Co-expression Network