LOC122335232 (LOC107677928)


Basic Information

Item Value
gene id LOC122335232
gene name LOC107677928
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29298708 ~ 29306240 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36347
TTCTGTATGGACATTTTAGATCAGTCGTGGGCGTCTCAACTGGTTAGCCGTTATTGATGGTGACATGGCCCAAAGTTGCTCAAAAGGTTGCCTTGTGTATCTTGAGATATTTTGTGTTGGTCCACTTTTGAACACAAGAGGTAGTGCTTTTCAAAACCAGCTGTTCTCTGTATTGTTTTTAGTTGTCTCCTTTAGGTTCATATGTACCCCATGTCGACCAAAATGCATCTTAATACCAG
>TU36353
ATTTACTGCAGTGCGATTTTCAGTATCATTGGCATCAGCATTCTGGAGACCATCCTGGTGAATCTTCTAAAGGCTAAAGGTGGAGAAAAAAGAGCAGTGGAAACAACAGCTGTTGAGCGAGATACGAATGTAGGAGACCAGCAGAGCCCTCCAGACTCAGTTGGAGACCAGCATGGGATGCAGAGATCTCTGTGCTGGATCAGAGTGG
>XM_043233049.1
ATTCAGGGGCAGTAAACATTACACAGGTagagaggatgatgatgatgatgcacaGGACAACTACTTAAGCAATTTAGCCAGGCAACTTTTTTGACCAACAATTTCTGTATGGACATTTTAGATCAGTCGTGGGCGTCTCAACTGGTTAGCCGTTATTGATGGTGACATGGCCCAAAGTTGCTCAAAAGGTTGCCTTGTGTATCTTGAGATATTTTGTGTTGGTCCACTTTTGAACACAAGAGGTAGTGCTTTTCAAAACCAGCTGTTCTCTGTATTGTTTTTAGTTGTCTCCTTTAGGTTCATATGTACCCCATGTCGACCAAAATGCATCTTAATACCAGCCTTAGATCCGCCATTGTTCAGCGGCAAACATTGCCGTGAACAATGGCGCAAATTTTGCTCCGTTTGCCACTGAGGTGAGCCTTCGATATACCCAATAGTAGTCAAAAGTGAAGTCCAGAGGGGATAAAACAAACTTTACACTAGGAGGACAGCTAGGGCCAATCTATTCCTTGAGAGTACTCCAGAGCCAGTGCTCCAGGAGGATCGGCCATTGTTATAGTGACAGGTGGCAGGGGATTCAGACCATTACGGGCTACAAGGCCCCTCCACAGACCTACGACAGCACCATCTCACTGCTAAATGAGTCGAAGAACGAACGCCTTTGCTGGTTTTGAGGTCCACTGCACAGAAGACTCCACCTCCCCCAGGAGACCAGGCGATGATGTGAGGAGATCCCTCAGCAGGAGCAGTGCACGCAAAGTgtgacaatatttttatatattgattatttaatCAATCTCGtaggatgaataaatgaaaaatgcgtGTAGGTGGATATCGCCTCTGGACATCGCGCGTTTGGCGTGCATAGTAATAAACACAGCACAATATCAAATTTCACTTTCAACGCAAAATGTCATTGTTCACGGCGACATTTCCCTCaagctattttaatattatatttacacgCAATTTGTTAgtcaatataatatttaaggTATAAATGCTTTTGTGTAATGTATAGTATGTCCCTAGGTGTTATGTGCCATTCTTACCAAAGCAAACTTTGTAAAGCTAtaatacctatatatataatGGAGGAGGCTGGGGATGTTTCTAACTCTGAGCATAAATATAACCTACAATGGCTTATATTTGTTCAAGTTAGAACTGTCATCCTATAAAAGCATCTCAGACACTGCGAGGATTTTGCACTCTTCACCATGTTCCTTCACTGGCTAGTGGTTCTTGCCTCAGTTGGTAagtttgtcttttaaatattgttaaatcagAACACTGTACAACTcagttatttaaattagttcattacaaactaacatgaacaacacttgaagtgttaaaaatgcatcGGTATTGTAACTTGGAAACTGCAGGAACTTCTACGAATTACgtttttctgctctttttttgaCGAATGGATAAACACCTTGAGTTTTGTCATTTCGAATTTCCTCATTTAGTATCGGATCCATTGATTTCATATGCAAGCAAGAGCATTCCTCGAGGTGACAGCTTGTTCGCGTTTAAGCCAACTACGTTACAGCATTATGTTCCACACTTGCATCCTGTATGTTAACGTTCTTGAGCCGATTACTTCTTGTTAAGAGTTCTGATTCAATATATGCTGCTGTTTTAGTTAGAAGGCagacaaatgtaatatttatctGCTTTGGAAACATTTTAGGAAACAAGTGGATTTCGAAGGCAgctttcaaaagacaaaaatagcCGATTAATATTGtctatatagaaatatatgtcATTGCTAAAATGCTGGTATTTTCCTCACTCACTCGTTGACCGAGTGTCTTTTTCTGGggattttcattcatttcatagAGTAAACACCAGTGATTTTATTGGGAGTTTTTGAGAGTATCAGTACATGCAAGAGACGGTTCAGCAAAATTCCCTACAGTAAAAGTTGCTCACTGGAATAGATTCAGGTATGTAATAGAAGGTTTTATCTTCACAGGGTGGATGTCTGATGCTGAAAACTGCAGTTATGAAGATTATTCTTCAGCTTACAAGACAATTTTTGAACATCTTGGCTTCAACAAGACTGATGTTCTGACGACAGACATCCGGCCTGTGTCCTGGAGCGTTATTACCAATGTTTTTGTGGGCCTGTATGTGACCTCCATCATAGATGTGaatgaAAAAGCCCAGAGTCTCACAACACAGGTCAAAATGATAACTGTTTGGTATAATGACCTGTCATGGTGGTTTGAAGACTATTGTGGAATCAAAACAAtcccagtaaaaaaaagtatgctctGGACGCCAGACATTCTAATCAAAGAAAGCATCAAGACAGATTTTGGAACAAAAGAGTCTCCGTATGTGCAGATAAACTTTTGGGGACTGTGCATCTCGGTTGACATTTTATCTCTGACCACTGCTTGTAAGATGGACCTCTACCGATTTCCCTTCGACACACAAATCTGCAACATAACACTTCACTCTGCAGTGTATACAAatgaGGAGCTTAAAATAAATCCAATCTCTGATAATACAAGTCTTCTCCAGGACTCAAAGGACTTGTTTCAGGCCCAGGGCGAGTGGGAACTCGTCAGTATAAATGTGTATGAATACACGTCCGGTCTTCTGTGGAGTTCACAGGAGCTGCTGGCACATCAGATCACCATCAAGAGAAGACCTCTGCTGTATGTCATGAACATTATCCTACCAGTATTCGTCTTCCTCGTGCTGGATGTGATGTCCTTCTTCATAGACGCAAGTGGAGCAGACAAGCTGAGCTTTAAAGTGACTTTACTGctgtctgtttctgttctgcTGCTGATTCTTAATGACACCCTGCCCTCTACGGCAGATAAAATCCCTCTGATTGGCATTTACTGCAGTGCGATTTTCAGTATCATTGGCATCAGCATTCTGGAGACCATCCTGGTGAATCTTCTAAAGGCTAAAGGTGGAGAAAAAAGAGCAGTGGAAACAACAGCTGTTGAGCGAGATACGAATGTAGGAGACCAGCAGAGCCCTCCAGACTCAGTTGGAGACCAGCATGGGATGCAGAGATCTCTGTGCTGGATCAGAGTGGCAAGAATCATAGATGTGACTTTCCTGGTTCTTTATATAATCACAGTTATTACATTTCTGTCGGTTCTTGCGAGGATTTGGTATCAGTCGTGATGTCTTACACAAGGTGGCAcacataaatactgtatttactaTTAGTAAACAATTACTATTCAGACATTATGCTCACTGTAAAAGACAGTAATAGtagttttaccttttttttttacatatttctgaaaatgttttttttttaaaaagtacaaacgATGATTGTGAattcaaatgtctttactgaAAGAAATCTGTAGTTA

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36347 False 239 lncRNA 0.41 1 29298810 29299048
TU36353 False 208 lncRNA 0.48 2 29305662 29305948
XM_043233049.1 True 3377 mRNA 0.40 8 29298708 29306240

Neighbor

gene id symbol gene type direction distance location
pycr1a pycr1a,pycr1,LOC107732146,LOC107675279,LOC107717481,LOC107671247,LOC107571301,LOC107552109 coding upstream 7264 29288138 ~ 29291444 (+)
LOC122335289 myadml2,LOC107671249,LOC107675441,LOC107717480,LOC107571305,LOC107552108,LOC107732151 coding upstream 11526 29284692 ~ 29287182 (+)
notum1a notum,notum1a,LOC107732149,LOC107671240,LOC108438914 coding upstream 14970 29274653 ~ 29283738 (+)
LOC122335520 LOC107675901,LOC107732152 coding upstream 70622 29224992 ~ 29228086 (+)
LOC122334787 NA coding upstream 73629 29215127 ~ 29225079 (+)
LOC122335371 LOC107758342 coding downstream 15108 29321348 ~ 29324920 (+)
LOC122334720 LOC107570416,LOC107685875,LOC107749047,LOC107728228 coding downstream 385067 29691307 ~ 29725107 (+)
LOC122334671 LOC107563545 coding downstream 467645 29773885 ~ 29785104 (+)
LOC122341412 NA coding downstream 610013 29916253 ~ 29921491 (+)
G24359 NA non-coding upstream 26390 29272032 ~ 29272318 (+)
G24317 LOC107732144,LOC107572667,LOC107674215,LOC107571308,LOC107571307,LOC107674125,LOC107671260,LOC107732141 non-coding upstream 94899 29195090 ~ 29203809 (+)
G24286 NA non-coding upstream 157131 29131163 ~ 29141577 (+)
G24278 NA non-coding upstream 172642 29120746 ~ 29126066 (+)
G24270 NA non-coding upstream 280205 29009482 ~ 29018503 (+)
G24386 NA non-coding downstream 6489 29312729 ~ 29318597 (+)
G24398 LOC107575850 non-coding downstream 41495 29347735 ~ 29348652 (+)
G24406 NA non-coding downstream 57311 29363551 ~ 29363768 (+)
G24438 LOC105357980 non-coding downstream 194278 29500518 ~ 29501330 (+)
LOC122335675 NA non-coding downstream 419954 29726194 ~ 29746875 (+)
cenpx stra13,LOC107676172,LOC107689848,LOC107732147,LOC107552128 other upstream 68477 29228716 ~ 29230231 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other upstream 224953 29060775 ~ 29073755 (+)
LOC122341401 NA other upstream 244294 29048278 ~ 29054414 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other upstream 365624 28869079 ~ 28933084 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other upstream 452333 28843814 ~ 28846375 (+)
LOC122335632 NA other downstream 85678 29391918 ~ 29402603 (+)
LOC122335508 LOC107717477,LOC107698766,LOC107552107,LOC107671248,LOC107740236 other downstream 133709 29439949 ~ 29442973 (+)
G24436 NA other downstream 193283 29499523 ~ 29500119 (+)

Expression


Co-expression Network