G24398 (LOC107575850)


Basic Information

Item Value
gene id G24398
gene name LOC107575850
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29347735 ~ 29348652 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36374
GATTACAATAAACCCAACCCCAGAGTACTTCAGAACAAGAAAATGActgaattacaacaaaaaatgcaataaaatgataGTTGAGCAGCACTATTTAAACATTGTGAATATGTACTCGAGATACTCAAATTGACCCATCAGCCCCACAATGACTAATAGACTTTAATCACTATCCAAAATGTTTGGCTGCAGAACCAGCCATCAGAACATAGCCATCATTTCTTTACATGCGTCACAAGCTCAATAATTTGTGGGACATGCCGTTTTCACAGAACTATCCTATTATGCCATTGTTTACTGTGCTGGTACcagaaacaagaacaaataagTATAGGTCGTTGACCTCGGCATGTTACTTACAAAATGTCAGTCATCTGTATTATTACCCGCAGGGTTATCAGACTGACACAGAGATAATGTGGAGTTAAATGCATAAGCTATAAGCCCGAATCCAGCATAGAGAGGTTCTGTGAATGTGTtgttgaatgtgtgtatgtgtatgagtTTGTGTGCTTTAGAAACATCGTAGAAGGACAGAATGCCGGCTGACACATCCACATATACTCCTATTCTATTAGAAGAGCTTAAAGAGACATGCGTGTCAGTGGCATGATAATTGTACCAGGCACAGAACGTGTCATACATGCAGGCCAGACACCAGGAGTTATTATTGAATCCAAACCAGCAGTCGGCACGCTTTCCTCTCCTGCCGATGCCTTTATATGCCACAGCGATATCTGTGTGTCCACTCCATTCaacctcccagtaacagcgtccagaCAGACTCTCTCTACTCAGAACTTGAGGAAGCCTTTCAAATCTCTCTGGATGTTCAGGATATGCCTGTGTCTCTTCCACATATGTCACCTTT
>TU36376
AAAGTTTAAGAAAAATCTGCATCTTTATTGCATTCTGACTCCACACAGATTACAATAAACCCAACCCCAGAGTACTTCAGAACAAGAAAATGActgaattacaacaaaaaatgcaataaaatgataGTTGAGCAGCACTATTTAAACATTGTGAATATGTACTCGAGATACTCAAATTGACCCATCAGCCCCACAATGACTAATAGACTTTAATCACTATCCAAAATGTTTGGCTGCAGAACCAGCCATCAGAACATAGCCATCATTTCTTTACATGCGTCACAAGCTCAATAATTTGTGGGACATGCCGTTTTCACAGAACTATCCTATTATGCCATTGTTTACTGTGCTGGTACcagaaacaagaacaaataagTATAGGTCGTTGACCTCGGCATGTTACTTACAAAATGTCAGTCATCTGTATTATTACCCGCAGGGTTATCAGACTGACACAGAGATAATGTGGAGTTAAATGCATAAGCTATAAGCCCGAATCCAGCATAGAGAGGTTCTGTGAATGTGTtgttgaatgtgtgtatgtgtatgagtTTGTGTGCTTTAGAAACATCGTAGAAGGACAGAATGCCGGCTGACACATCCACATATACTCCTATTCTATTAGAAGAGCTTAAAGAGACATGCGTGTCAGTGGCATGATAATTGTACCAGGCACAGAACGTGTCATACATGCAGGCCAGACACCAGGAGTTATTATTGAATCCAAACCAGCAGTCGGCACGCTTTCCTCTCCTGCCGATGCCTTTATATGCCACAGCGATATCTGTGTGTCCACTCCATTCaacctcccagtaacagcgtccagaCAGACTCTCTCTACTCAGAACTTGAGGAAGCCTTTCAAATCTCTCTGGATGTTCAGGATATGCCTGTGTCTCTTCCACATATGTCACCTTT

Function

NR:

description
PREDICTED: stonustoxin subunit alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36374 False 871 lncRNA 0.41 1 29347782 29348652
TU36376 True 918 lncRNA 0.41 1 29347735 29348652

Neighbor

gene id symbol gene type direction distance location
LOC122335371 LOC107758342 coding upstream 22815 29321348 ~ 29324920 (+)
pycr1a pycr1a,pycr1,LOC107732146,LOC107675279,LOC107717481,LOC107671247,LOC107571301,LOC107552109 coding upstream 56291 29288138 ~ 29291444 (+)
LOC122335289 myadml2,LOC107671249,LOC107675441,LOC107717480,LOC107571305,LOC107552108,LOC107732151 coding upstream 60553 29284692 ~ 29287182 (+)
notum1a notum,notum1a,LOC107732149,LOC107671240,LOC108438914 coding upstream 63997 29274653 ~ 29283738 (+)
LOC122335520 LOC107675901,LOC107732152 coding upstream 119649 29224992 ~ 29228086 (+)
LOC122334720 LOC107570416,LOC107685875,LOC107749047,LOC107728228 coding downstream 342655 29691307 ~ 29725107 (+)
LOC122334671 LOC107563545 coding downstream 425233 29773885 ~ 29785104 (+)
LOC122341412 NA coding downstream 567601 29916253 ~ 29921491 (+)
G24386 NA non-coding upstream 29138 29312729 ~ 29318597 (+)
G24359 NA non-coding upstream 75417 29272032 ~ 29272318 (+)
G24317 LOC107732144,LOC107572667,LOC107674215,LOC107571308,LOC107571307,LOC107674125,LOC107671260,LOC107732141 non-coding upstream 143926 29195090 ~ 29203809 (+)
G24286 NA non-coding upstream 206158 29131163 ~ 29141577 (+)
G24278 NA non-coding upstream 221669 29120746 ~ 29126066 (+)
G24406 NA non-coding downstream 14899 29363551 ~ 29363768 (+)
G24438 LOC105357980 non-coding downstream 151866 29500518 ~ 29501330 (+)
LOC122335675 NA non-coding downstream 377542 29726194 ~ 29746875 (+)
G24464 NA non-coding downstream 465967 29814619 ~ 29815647 (+)
LOC122333787 NA non-coding downstream 572883 29921535 ~ 29922299 (+)
LOC122335232 LOC107677928 other upstream 41495 29298708 ~ 29306240 (+)
cenpx stra13,LOC107676172,LOC107689848,LOC107732147,LOC107552128 other upstream 117504 29228716 ~ 29230231 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other upstream 273980 29060775 ~ 29073755 (+)
LOC122341401 NA other upstream 293321 29048278 ~ 29054414 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other upstream 414651 28869079 ~ 28933084 (+)
LOC122335632 NA other downstream 43266 29391918 ~ 29402603 (+)
LOC122335508 LOC107717477,LOC107698766,LOC107552107,LOC107671248,LOC107740236 other downstream 91297 29439949 ~ 29442973 (+)
G24436 NA other downstream 150871 29499523 ~ 29500119 (+)

Expression


Co-expression Network