grifin (grifin,LOC107758328,LOC107592780,LOC107592523)


Basic Information

Item Value
gene id grifin
gene name grifin,LOC107758328,LOC107592780,LOC107592523
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16243653 ~ 16245403 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225462.1
GGTGAAAGTGATGATGTTTGCtattttttgcaatgttttgaaTCAGTTTGAGGCATCCTGTCCTGACGGTCTATGTCCAGGATGGAGTGTCATCCTGAAAGGAGAGACCCCAGCAGAAGCCAGCAAGTTTGAGATCAATTTCCTATGTGACCGCGATGACAGAATAGCTTTGCATTTCAACCCGCGCTTCACCGAGTCAGATATCATCTGCAATTCCTACATGGCCAACCACTGGGGGCAGGAGGAGAGGTGCAACAGCTTCCCCCTCGGGATAGAAGAGCCTTTCCAGATTGAAATTTACTCTGACAATGATAACTTCCATGTTTACATTGACGAAACCAAGGTGATGCAGTATAAACACCGCGTGGAAGACCTGAAGACCATCACGAAAGTGCAAGTGGTCAATGACGTCAATATCTCTTCTTTAGAGAtcaccaaaaaacatttttattaagtggCGGGGCATAAGGCCAAACAGATGATTCATTTGGAGTGAgccttgtgtttgtttatggtGGGTtactgttttttgcatttttgtttacacaccTTTCCATTCTTATAATTATCCTCTTGGCTTAATTATCTTTTGTAAAG

Function

symbol description
grifin Enables lactose binding activity. Acts upstream of or within camera-type eye development. Predicted to be active in cytoplasm. Is expressed in brain; eye; pleuroperitoneal region; and solid lens vesicle. Orthologous to human GRIFIN (galectin-related inter-fiber protein).

NR:

description
PREDICTED: grifin

GO:

id name namespace
GO:0030395 lactose binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225462.1 True 597 mRNA 0.43 3 16243653 16245403

Neighbor

gene id symbol gene type direction distance location
LOC122341827 LOC107703344,LOC107753612,LOC101883165,LOC107592774,LOC107581787,LOC107674625,LOC107758329 coding downstream 2063 16237804 ~ 16241590 (-)
sdk1a sdk1a,LOC107703405,LOC107591833,LOC107674633 coding downstream 110495 15888140 ~ 16133158 (-)
LOC122333178 cyp3c3,LOC107703407,LOC107748444,LOC107720069,LOC107581712,LOC107703406 coding downstream 356385 15880475 ~ 15887268 (-)
LOC122333197 cyp3c4,cyp3c3,LOC107703406,LOC107581712,LOC107703407,LOC107748444,LOC107748668,LOC107720069 coding downstream 364200 15873998 ~ 15879453 (-)
foxk1 foxk1,LOC107748300,LOC107581713,LOC107720067,LOC107674632 coding downstream 371469 15857834 ~ 15872184 (-)
ttyh3a ttyh3a,LOC107581706,LOC107591862,LOC107703399 coding upstream 63018 16308421 ~ 16357532 (-)
nudt1 nudt1,LOC107703398,LOC107592807,LOC107758325,LOC107674605 coding upstream 123470 16368873 ~ 16372439 (-)
LOC122341848 LOC101886504,LOC101886427 coding upstream 204151 16449554 ~ 16451043 (-)
elfn1a elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding upstream 296945 16542348 ~ 16629156 (-)
axin1 axin1,LOC107727128,LOC107703383,LOC107745589,LOC107674664 coding upstream 712559 16957962 ~ 16998780 (-)
G20627 NA non-coding downstream 24396 16218246 ~ 16219257 (-)
G20630 NA non-coding downstream 27409 16214600 ~ 16216244 (-)
G20624 gna12,LOC107703403,LOC107758336,LOC107753491,LOC107592501,LOC107674729 non-coding downstream 35834 16205369 ~ 16207819 (-)
G20571 NA non-coding downstream 421708 15821219 ~ 15821945 (-)
G20546 NA non-coding downstream 606041 15635072 ~ 15637612 (-)
G20643 NA non-coding upstream 24281 16269684 ~ 16269908 (-)
G20645 NA non-coding upstream 26876 16272279 ~ 16272524 (-)
G20717 NA non-coding upstream 445762 16691165 ~ 16699422 (-)
G20752 NA non-coding upstream 537801 16783204 ~ 16783825 (-)
G20753 NA non-coding upstream 539587 16784990 ~ 16785208 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other downstream 643305 15598770 ~ 15600348 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other downstream 1064294 15120806 ~ 15179359 (-)
LOC122341947 NA other downstream 1098045 15141817 ~ 15145608 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other downstream 1804112 14435147 ~ 14439541 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 2039303 14202930 ~ 14204350 (-)
G20680 LOC101886504,LOC101886427 other upstream 205737 16451140 ~ 16451800 (-)
LOC122341847 NA other upstream 207671 16453074 ~ 16455479 (-)
mafk mafk,LOC107703391,LOC107674662 other upstream 470318 16715721 ~ 16729689 (-)
uncx uncx,LOC107703385,LOC107674712,LOC107568937,LOC107745590 other upstream 617322 16862725 ~ 16873987 (-)
snn snn,LOC107564698,LOC107703342 other upstream 793784 17039187 ~ 17042414 (-)

Expression


Co-expression Network