hoxb10a (hoxb10a,LOC107662435,LOC107740623,LOC107585092)


Basic Information

Item Value
gene id hoxb10a
gene name hoxb10a,LOC107662435,LOC107740623,LOC107585092
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22685013 ~ 22689691 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225470.1
ttaagttatttatttttcaccgTATGATTTGTCCAGGTTATTAACTGAATAAGCACATCGTCCAGATAGGTTTAGATtcggaaatgtaaaaaaaagataataatatatCGATATGTCATTGTTAGATATTTGTATCGTATTCATCGTCGATTTTAATTCGATCATcgacttatttttattaaagatttgTTATAACCTATTTCcttgaattttattatttgcaccGGAGCAATTACAAAATACAGCATTCAtctaaatgaagacatttaGAATATTGTAGTATGGAAGATAAAAAAAGACCTCGTTTACACCCGGTATGTTTGTTTCAGGGAATATTAAgggaatattattattttgatttgcgcgcactgtttatatatataatgatgtatttatattgtCGCGTAATATCTAGTAGATAATGCCATATGCAACTAACAAATTTGGTCACAAAATCTCAATCCTGCGGTTGAGGAAGCACGTGGTTTGGCCCTGAGGTTCACGTGCTCTTGTATTGATAAAAGCTGCTAATaaacgctcaacgtgatcattcacAATGCTGTGGATTTCTGGCTCGGTGGTCATTTCATTCACGATACGCCAAAACAATAATTAACATCTAAAACAAGCAGgaaataaaaatcttgaaaCATCCTTTGATCTTGTAATTcacatcttatatatatatacacaatcaATTTAACATAGTTTATGTACAGAATTAGCTGATTATTATGTCAAGCCTATCTGTTTTTTGAGTGTTTAATATATTCCGGTAAAATATTTCGTGTTCTCACTcctatattgtttttttctgaaaccgAGCGTACTACAtactaaaatatctttattggTGCCTTTGAAATATTTCACCCAAAGTAAATCTGAAACGAAATAGGTTGCTATTTTACTTAGACACAGAACATATACATATCGACTACATTAGGATATTTTGTcggctaaaaaaaatacaataaaataacaaatcagTTATgtaacaaactaaataaattcattttttaccAGCatctattataataaaataagaatgttattattatgttgttcCTATAATAAAATCGCGTCgtcttaaattaatttgtatacCGTGAATAAAACCATCGCGCCAGTTTGAGTGTTCTTGCTGCTTATTTTATACTCTTAACATCGGTGTCATTTGAAATCTgtcgtttttgttgttgtttaattactttatatttcTGGTCAGataattatgtttgttttaccTGTATAGTCGACCTATTTCGCACAGACAGCGCTAAACTTATTTACTCCACCTTGACTatatatcattatcatttttaaatcttcataTAATCAATGAGATTATTTGCACCGTCTTCGCGAGCTTTACGTTCAGATCTATAATCTGGTgcagcattaaattaaaaaaaagaatcacaaCGGTGTGGAAGCTTGAAGAAGCACTTGAATGAAGCAGTCCTGCAAGGGGAGGAGCTTGCCCGTGAACCCCAGTCTGTATTGAGCTCGCGGCAGAAGAAAGCGTGCGCGCGCCATACTGCTCGAAAAGCCGCTGTCGCCTCGGCCCAAAATATGTTCCAGCAATGTCATTCTCCGACAAATTCTCCGCGGCGACTATCACGCTCCCAGAAGGGAAACCTTCCGTCGCGCGGGTCTAAAGGATCCTTCGCGTGGAGCTCGCGGGTCGTCGCGTCCTAACCCGGACCGCCAAGTCCAAAACAGCGGGACCACCCCGGCGCGCTCCGGACAGTAACACAGATTCAGATATTCCCCTGCCGAGTGAGCCATGGCTCTGCCGCGGCACCAGCTTCTCCACGGAGCCGTGAACTGGGATGCAGCGCAGTTGGGTCCTGTCCAGGTTTCCCATGCCAGCGCGTGCCCTATCGGCGTTTCTAGCCGAAAAGAAGACCCCTTCTATTTTTCCCTGGACCCAACAGGGCAAGCCAGACAGCATCTCGACATCTCCGCCTTCAGCAGGTTCGTGACAGACATGGGCTCTCTGAACGGCGCTGACAACCATCGCCCAGAAGCGTGCTTTTACTCCGGACACAAACTCCCGTCTCTCAACGCCGACGCGGATCCAGAGAGCCCGTCGCACTCTTCCCACTCAGACTCCCAACGGTTGCACGGTCTGTCTCGCTCCGCGCCTTTCCGCTCGGAAAGTGACAATAAGCCCGACGCGCGTTATTTACCGACGGAAAGCACTAAGTACTCGAGCCAGTGGAGTGAAAGCAGAACCAACGGGAGCATCATCACCACGCTGAGCATCAGTCAGAGGAGCAGAGACGACACAGAGCCAAATAATGTCCAGGCAGACTTCCCCGGGAGCGATAAAACTCACAGAAAGGGAACTCAAGACGTGACTTTAGAAAACGCTGCGAATGGCTGGCTGTCGGCGAAAGCAGGGAGGAAGAAGCGATGTCCTTACAGCAAACACCAAATCTTAGAGCTGGAAAAAGAATTCCTGTTCAACATGTACCTGACTCGCGAGCGCCGCCTGGAGGTCAGCCGGAGCATTGACCTCACCGACCGCCAGGTTAAGATTTGGTTTCAGAATCGGAGGATGAAACTGAAAAGAATGACTCGAGAGCACCGGACGAGGGACCCCGGCACGGGCTTTACTGTCTAGTTTGCTATGTAAGACGGTTAAAAATCCCGAACTCAGCGCACAAATCATTGCAGCCATCATCCGGTGCAAGTGGATTGATGCAACCGCTGCTTCTGATGGATTAACGGGAGGAAACGATAAGTCAAATCTTACTCGGTGTTTCACAATAAGCGTTCTATAAGCCAAATGTAAGGGAGATAAATTGAATATCTCGCATGCAGAAAAGTGTAACGAAATAAGAAGAGACGTTTTGGCTATTCGGCGCAAGCATATCCTATTCAAGGCCCTTGGACAATGTTTACTGATGTCGTTTAAGCAGTGTTTCCCCAGTAGCTTGTATgtggatgtgtttttttttcctttttacaggttatgagtgtatatatttatatattaggtAGCTAACTTTGTGCGGACACTcccgagtaaaaaaaaaaaaaatcttaaaagaaaatgcattatgaGAGGAGCAGTCACATCAAGCACAGGTACtgtttttatgctgtttatatAAACTGGAGTGAGAAGGCACGGATTTTCTTCCCTTCTGCTGAAGCATGGTCGAATGTATAACTTAAACTGtgatttttctaaaagaaaaagtttctgttttggaaaaacagtgcatttttttaaaaataaagatcgCACTTCGTCAGTGGGAAAGTACGGTGGTCGCTTTGAAAATGACCTTATTGGCCGTGTTCTAGTTTAGTATTGTGACAAGACGACTGGAAATAACAAGCAGAACGATAATGGTCAAATCTGAAGATGATTTTAAGGATTGCTGATTAAAATCACGACAACATATAGCTTGCAATGGAAAAAACATGgcattaaaggaataaaggCATTTGGTAATTGTAACAATTACAAAACTTTA

Function

symbol description
hoxb10a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in CNS interneuron; central nervous system; margin; neural tube; and spinal cord.

NR:

description
PREDICTED: homeobox protein Hox-B10a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225470.1 True 3494 mRNA 0.41 2 22685013 22689691

Neighbor

gene id symbol gene type direction distance location
hoxb13a hoxb13a,LOC107687788,LOC107662424,LOC107585093,LOC107717198,LOC107740673,LOC107582955 coding upstream 9893 22673476 ~ 22675120 (+)
nr1d1 LOC107585045,LOC107740628,LOC107662394,LOC107582883,LOC107667757 coding upstream 109023 22568967 ~ 22575990 (+)
ppp1r9ba ppp1r9b,ppp1r9ba,LOC107740632,LOC107717206,LOC107667750,LOC107582927 coding upstream 194223 22455402 ~ 22490790 (+)
col1a1a LOC107585052,LOC107740634,LOC107582926 coding upstream 235364 22434373 ~ 22449649 (+)
gngt2a NA coding upstream 297528 22384731 ~ 22387485 (+)
hoxb9a hoxb9a,LOC107585091,LOC107662432,LOC107717219,LOC107687790,LOC107582956 coding downstream 1487 22691178 ~ 22699171 (+)
hoxb8a hoxb8a,LOC107662386,LOC107582957,LOC107585089,LOC107740672,LOC107687792,LOC107717220 coding downstream 14233 22703924 ~ 22706737 (+)
hoxb7a hoxb7a,LOC107740671,LOC107662388,LOC107717221,LOC107585088,LOC107687793,LOC107582958 coding downstream 18303 22707994 ~ 22712057 (+)
hoxb3a hoxb3a,LOC107687775,LOC107582888,LOC107740615,LOC107717222,LOC107662380,LOC107585040 coding downstream 24182 22713873 ~ 22765536 (+)
hoxb6a hoxb6a,hoxb6,LOC107585042,LOC107662387,LOC107582892 coding downstream 29769 22719460 ~ 22721579 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 12102 22511428 ~ 22672911 (+)
LOC122341843 NA non-coding upstream 595082 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 950591 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 1048443 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 1048934 21635744 ~ 21636079 (+)
G22554 ddx5,LOC107695114 non-coding downstream 250556 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 399782 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 411253 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 424587 23114278 ~ 23116840 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 706810 23396501 ~ 23400922 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other upstream 137805 22546158 ~ 22547208 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other upstream 154953 22528989 ~ 22530060 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other upstream 348786 22268986 ~ 22336227 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 659102 21976509 ~ 22025911 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other upstream 708348 21975252 ~ 21976665 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other downstream 32331 22722022 ~ 22726158 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other downstream 75956 22765647 ~ 22770602 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other downstream 209642 22899333 ~ 22908135 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other downstream 468528 23158219 ~ 23163716 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 648688 23338379 ~ 23343640 (+)

Expression


Co-expression Network