wbp2nl (wbp2nl,LOC107569878,LOC107661077,LOC107670540,LOC107749952,LOC107568364)


Basic Information

Item Value
gene id wbp2nl
gene name wbp2nl,LOC107569878,LOC107661077,LOC107670540,LOC107749952,LOC107568364
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8296132 ~ 8300760 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225548.1
GGAGTCACGTGGTGCCGGAAATAAAGTGCGCAGCTGTTTATGAAGGATCTGTTCTTCACTGACACAGGATCAAAACACTGCTATTAAAGAGAGTCGCGCGGAAATAAACGTCTGATTTAATCGAGTGATCATCGACATGACGCTGAACAGAAACCATCACCCGAACGGAGGAGTCCTGATTCAGGCCGGAGAGAGCATCTTACGAGAATGCAAGAACGTCGAGCTTTCCTTCAGTGACATCACACCCAAAAATGAGCTGTTCAAGGGGACCAAGAAGGGCTCTGTGTACCTCACCCAGTACCGGATGGTGTTCATCTGCAGCACGATGAAAGAGAAGTTCTGCTCCTTCATGTTCCCGTATTATCTGATGAAGAACTGCAGCATCGAGCAGCCGGTGTTCGCTGCCAACTACATCCAGGGCTTGATCAAAGCCGAGGCGGGAGgtggaTGGGAAGGTCAGGCTAACTTTAAGATGTCTTTCCCCAGCGGAGGAGCCATTGAGCTGGGACAGCACCTCTTCAAACTGGCCACCAACGcaTCTCGAGCTCCTCCAGCTCAGAACGGAGCGTTTGGATTGGCCGCAGGGATGAACGGATACGCCAGTCCAGCCATGCCACAGCCGTACCCGTACCCATATCCCAGCATGCCACAGGCCGGGTACAACCCCTACCCACAACCCCCTGCTGCAGgtgtgtatCCCAGCGCTCCTATGtacatggctcctcctcctccatacCCCGGACCTCCTCAGAACTGGTGCCCTCCTCCAgtggCTCCTGGAAACACTAAAGCAGCAGAAGCAGCCAGCAGCGCCTTCTACAACCCCAGCAACCCTCACAGCGTCTACATGCCCatgGACCAGCCTCCTCCGTATTACCCTCCTGAGAATCCAGAGAAGAAGAACAACTGAAGGACGACGATCCCATCACCTTTTACTCTTAGTCTGATTAATACTTCTATTTCTGCCTACTCACTTTTtaatcctgtgtgtgtgtgtgtgtgtgtgtgtgtgacgctgAACTCTTCTGTAAATTCCTTTTGATAATATATTAATCATCCCTGATAGCTGGCAGTGGGTGAGGCTGATAGAGTTGATGTAGACGGTTGAATAAAGCTCTATATTCTGTCA

Function

symbol description
wbp2nl Predicted to enable chromatin DNA binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within egg activation; female pronucleus assembly; and male pronucleus assembly. Predicted to be located in perinuclear theca. Predicted to be active in nucleus. Orthologous to human WBP2NL (WBP2 N-terminal like).

NR:

description
WW domain-binding protein 2-like

GO: NA

KEGG:

id description
K22524 WBP2; WW domain-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225548.1 True 1129 mRNA 0.51 8 8296132 8300760

Neighbor

gene id symbol gene type direction distance location
rrp7a LOC107673310,LOC107591059 coding upstream 66518 8227784 ~ 8229614 (+)
poldip3 poldip3,LOC107661083,LOC107580331,LOC107714893,LOC107666602,LOC107579899 coding upstream 68778 8219924 ~ 8227354 (+)
ndufa6 ndufa6 coding upstream 89051 8201599 ~ 8207081 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding upstream 95654 8189453 ~ 8200478 (+)
LOC122339678 NA coding upstream 106839 8184548 ~ 8189293 (+)
LOC122341286 NA coding downstream 192661 8493421 ~ 8494226 (+)
LOC122341287 LOC107758354,LOC107569871 coding downstream 192935 8493695 ~ 8498279 (+)
LOC122341872 bglap,LOC107746533,LOC107676398 coding downstream 251326 8552086 ~ 8556310 (+)
ddx47 ddx47,LOC106601200 coding downstream 264640 8565400 ~ 8575713 (+)
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding downstream 315520 8616280 ~ 8660516 (+)
G18010 NA non-coding upstream 78915 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding upstream 79101 8216524 ~ 8217031 (+)
G17990 NA non-coding upstream 151107 7984480 ~ 8145025 (+)
LOC122331402 NA non-coding downstream 11629 8312389 ~ 8314490 (+)
G18055 NA non-coding downstream 173533 8474293 ~ 8490417 (+)
G18092 NA non-coding downstream 370901 8671661 ~ 8675886 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding downstream 580438 8881198 ~ 8882122 (+)
G18303 NA non-coding downstream 949339 9250099 ~ 9250630 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 143238 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 236275 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 329938 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 333156 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 344768 7950854 ~ 7951364 (+)
G18048 NA other downstream 212589 8513349 ~ 8742302 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other downstream 243531 8544291 ~ 8551151 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 679831 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 709290 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 837707 9138467 ~ 9183290 (+)

Expression


Co-expression Network